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PDB: 321 results

5FPX
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BU of 5fpx by Molmil
The structure of KdgF from Yersinia enterocolitica.
Descriptor: NICKEL (II) ION, PECTIN DEGRADATION PROTEIN, PEPTIDE
Authors:Hobbs, J.K, Lee, S.M, Robb, M, Hof, F, Barr, C, Abe, K.T, Hehemann, J.H, McLean, R, Abbott, D.W, Boraston, A.B.
Deposit date:2015-12-03
Release date:2016-05-04
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Kdgf, the Missing Link in the Microbial Metabolism of Uronate Sugars from Pectin and Alginate.
Proc.Natl.Acad.Sci.USA, 113, 2016
5FQ0
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BU of 5fq0 by Molmil
The structure of KdgF from Halomonas sp.
Descriptor: CITRATE ANION, KDGF, NICKEL (II) ION, ...
Authors:Hobbs, J.K, Lee, S.M, Robb, M, Hof, F, Barr, C, Abe, K.T, Hehemann, J.H, McLean, R, Abbott, D.W, Boraston, A.B.
Deposit date:2015-12-03
Release date:2016-05-04
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2 Å)
Cite:Kdgf, the Missing Link in the Microbial Metabolism of Uronate Sugars from Pectin and Alginate.
Proc.Natl.Acad.Sci.USA, 113, 2016
2LTJ
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BU of 2ltj by Molmil
Conformational analysis of StrH, the surface-attached exo- beta-D-N-acetylglucosaminidase from Streptococcus pneumoniae
Descriptor: Beta-N-acetylhexosaminidase
Authors:Pluvinage, B, Chitayat, S, Ficko-Blean, E, Abbott, D, Kunjachen, J, Grondin, J, Spencer, H, Smith, S, Boraston, A.
Deposit date:2012-05-28
Release date:2012-11-28
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Conformational analysis of StrH, the surface-attached exo-beta-D-N-acetylglucosaminidase from Streptococcus pneumoniae.
J.Mol.Biol., 425, 2013
6BIA
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BU of 6bia by Molmil
Crystal structure of Ps i-CgsB
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, CITRIC ACID, ...
Authors:Hettle, A.G, Boraston, A.B.
Deposit date:2017-11-01
Release date:2018-03-14
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The Molecular Basis of Polysaccharide Sulfatase Activity and a Nomenclature for Catalytic Subsites in this Class of Enzyme.
Structure, 26, 2018
1OIN
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BU of 1oin by Molmil
Family 1 b-glucosidase from Thermotoga maritima
Descriptor: 2-deoxy-2-fluoro-alpha-D-glucopyranose, BETA-GLUCOSIDASE A
Authors:Gloster, T, Zechel, D.L, Boraston, A.B, Boraston, C.M, Macdonald, J.M, Tilbrook, D.M, Stick, R.V, Davies, G.J.
Deposit date:2003-06-19
Release date:2003-11-25
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Iminosugar Glycosidase Inhibitors: Structural and Thermodynamic Dissection of the Binding of Isofagomine and 1-Deoxynojirimycin to Beta-Glucosidases
J.Am.Chem.Soc., 125, 2003
1OD0
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BU of 1od0 by Molmil
Family 1 b-glucosidase from Thermotoga maritima
Descriptor: BETA-GLUCOSIDASE A
Authors:Gloster, T, Zechel, D.L, Boraston, A.B, Boraston, C.M, Macdonald, J.M, Tilbrook, D.M, Stick, R.V, Davies, G.J.
Deposit date:2003-02-12
Release date:2003-03-06
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Iminosugar Glycosidase Inhibitors: Structural and Thermodynamic Dissection of the Binding of Isofagomine and 1-Deoxynojirimycin to Beta-Glucosidases
J.Am.Chem.Soc., 125, 2003
1OIM
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BU of 1oim by Molmil
Family 1 b-glucosidase from Thermotoga maritima
Descriptor: 1-DEOXYNOJIRIMYCIN, BETA-GLUCOSIDASE A
Authors:Gloster, T, Zechel, D.L, Boraston, A.B, Boraston, C.M, Macdonald, J.M, Tilbrook, D.M, Stick, R.V, Davies, G.J.
Deposit date:2003-06-19
Release date:2003-11-25
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Iminosugar Glycosidase Inhibitors: Structural and Thermodynamic Dissection of the Binding of Isofagomine and 1-Deoxynojirimycin to Beta-Glucosidases
J.Am.Chem.Soc., 125, 2003
1OIF
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BU of 1oif by Molmil
Family 1 b-glucosidase from Thermotoga maritima
Descriptor: 5-HYDROXYMETHYL-3,4-DIHYDROXYPIPERIDINE, BETA-GLUCOSIDASE
Authors:Gloster, T, Zechel, D, Boraston, A.B, Boraston, C.M, Macdonald, J.M, Tilbrook, D.M, Stick, R.V, Davies, G.J.
Deposit date:2003-06-16
Release date:2003-11-25
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:Iminosugar Glycosidase Inhibitors: Structural and Thermodynamic Dissection of the Binding of Isofagomine and 1-Deoxynojirimycin to Beta-Glucosidases
J.Am.Chem.Soc., 125, 2003
2O4E
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BU of 2o4e by Molmil
The solution structure of a protein-protein interaction module from a family 84 glycoside hydrolase of Clostridium perfringens
Descriptor: O-GlcNAcase nagJ
Authors:Chitayat, S, Adams, J.J, Gregg, K, Boraston, A.B, Smith, S.P.
Deposit date:2006-12-04
Release date:2007-11-06
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Three-dimensional structure of a putative non-cellulosomal cohesin module from a Clostridium perfringens family 84 glycoside hydrolase.
J.Mol.Biol., 375, 2008
5KDV
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BU of 5kdv by Molmil
IMPa metallopeptidase from Pseudomonas aeruginosa
Descriptor: 1,2-ETHANEDIOL, Metallopeptidase, SULFATE ION, ...
Authors:Noach, I, Boraston, A.B.
Deposit date:2016-06-08
Release date:2017-01-11
Last modified:2017-02-08
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Recognition of protein-linked glycans as a determinant of peptidase activity.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5KDW
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BU of 5kdw by Molmil
IMPa metallopeptidase from Pseudomonas aeruginosa
Descriptor: 1,2-ETHANEDIOL, Metallopeptidase, PHOSPHATE ION, ...
Authors:Noach, I, Boraston, A.B.
Deposit date:2016-06-08
Release date:2017-01-11
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Recognition of protein-linked glycans as a determinant of peptidase activity.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
7LJ2
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BU of 7lj2 by Molmil
Structure of Exo-L-galactose-6-sulfatase BuS1_11 from Bacteroides uniformis in complex with neoporphyrabiose
Descriptor: 6-O-sulfo-alpha-L-galactopyranose-(1-3)-beta-D-galactopyranose, CALCIUM ION, Exo-L-galactose-6-sulfatase, ...
Authors:Robb, C.S, Boraston, A.B.
Deposit date:2021-01-28
Release date:2022-02-09
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Metabolism of a hybrid algal galactan by members of the human gut microbiome.
Nat.Chem.Biol., 18, 2022
5KDU
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BU of 5kdu by Molmil
ZmpB metallopeptidase in complex with a2,6-Sialyl T-antigen
Descriptor: 1,2-ETHANEDIOL, F5/8 type C domain protein, SERINE, ...
Authors:Noach, I, Ficko-Blean, E, Stuart, C, Boraston, A.B.
Deposit date:2016-06-08
Release date:2017-01-11
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Recognition of protein-linked glycans as a determinant of peptidase activity.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5KDN
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BU of 5kdn by Molmil
ZmpB metallopeptidase from Clostridium perfringens
Descriptor: 1,2-ETHANEDIOL, F5/8 type C domain protein, ZINC ION
Authors:Noach, I, Ficko-Blean, E, Stuart, C, Boraston, A.B.
Deposit date:2016-06-08
Release date:2017-01-11
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Recognition of protein-linked glycans as a determinant of peptidase activity.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5KDS
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BU of 5kds by Molmil
ZmpB metallopeptidase in complex with an O-glycopeptide (a2,6-sialylated core-3 pentapeptide).
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-[N-acetyl-alpha-neuraminic acid-(2-6)]2-acetamido-2-deoxy-alpha-D-galactopyranose, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ...
Authors:Noach, I, Ficko-Blean, E, Stuart, C, Boraston, A.B.
Deposit date:2016-06-08
Release date:2017-01-11
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Recognition of protein-linked glycans as a determinant of peptidase activity.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5KD2
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BU of 5kd2 by Molmil
BT_4244 metallopeptidase from Bacteroides thetaiotaomicron
Descriptor: 1,2-ETHANEDIOL, ZINC ION, metallopeptidase
Authors:Noach, I, Boraston, A.B.
Deposit date:2016-06-07
Release date:2017-01-11
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Recognition of protein-linked glycans as a determinant of peptidase activity.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5KDJ
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BU of 5kdj by Molmil
ZmpB metallopeptidase from Clostridium perfringens
Descriptor: F5/8 type C domain protein, GLYCEROL, SODIUM ION, ...
Authors:Noach, I, Ficko-Blean, E, Stuart, C, Boraston, A.B.
Deposit date:2016-06-08
Release date:2017-01-11
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Recognition of protein-linked glycans as a determinant of peptidase activity.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
7LHA
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BU of 7lha by Molmil
Structure of the Exo-L-galactose-6-sulfatase BuS1_11 from Bacteroides uniformis
Descriptor: CALCIUM ION, Exo-L-galactose-6-sulfatase, NICKEL (II) ION
Authors:Robb, C.S, Boraston, A.B.
Deposit date:2021-01-21
Release date:2022-02-09
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Metabolism of a hybrid algal galactan by members of the human gut microbiome.
Nat.Chem.Biol., 18, 2022
7LJJ
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BU of 7ljj by Molmil
Structure of the Exo-alpha-L-galactosidase BpGH29 from Bacteroides plebeius
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, Exo-alpha-L-galactosidase
Authors:Robb, C.S, Boraston, A.B.
Deposit date:2021-01-29
Release date:2022-02-09
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Metabolism of a hybrid algal galactan by members of the human gut microbiome.
Nat.Chem.Biol., 18, 2022
7LH6
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BU of 7lh6 by Molmil
The structure of Bacteroides plebeius L-galactose dehydrogenase
Descriptor: L-galactose dehydrogenase
Authors:Robb, C.S, Pluvinage, B, Vickers, C, Boraston, A.B.
Deposit date:2021-01-21
Release date:2022-02-09
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Metabolism of a hybrid algal galactan by members of the human gut microbiome.
Nat.Chem.Biol., 18, 2022
6B1V
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BU of 6b1v by Molmil
Crystal structure of Ps i-CgsB C78S in complex with i-neocarratetraose
Descriptor: 1,2-ETHANEDIOL, 3,6-anhydro-2-O-sulfo-alpha-D-galactopyranose-(1-3)-4-O-sulfo-beta-D-galactopyranose-(1-4)-3,6-anhydro-2-O-sulfo-alpha-D-galactopyranose-(1-3)-4-O-sulfo-beta-D-galactopyranose, CALCIUM ION, ...
Authors:Hettle, A.G, Boraston, A.B.
Deposit date:2017-09-19
Release date:2018-03-14
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.84 Å)
Cite:The Molecular Basis of Polysaccharide Sulfatase Activity and a Nomenclature for Catalytic Subsites in this Class of Enzyme.
Structure, 26, 2018
6B0K
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BU of 6b0k by Molmil
Crystal structure of Ps i-CgsB C78S in complex with k-carrapentaose
Descriptor: 1,2-ETHANEDIOL, 3,6-anhydro-D-galactose, 4-O-sulfo-beta-D-galactopyranose, ...
Authors:Hettle, A, Boraston, A.B.
Deposit date:2017-09-14
Release date:2018-03-14
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:The Molecular Basis of Polysaccharide Sulfatase Activity and a Nomenclature for Catalytic Subsites in this Class of Enzyme.
Structure, 26, 2018
6B0J
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BU of 6b0j by Molmil
Crystal structure of Ps i-CgsB in complex with k-i-k-neocarrahexaose
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 3,6-anhydro-2-O-sulfo-alpha-D-galactopyranose-(1-3)-4-O-sulfo-beta-D-galactopyranose, ...
Authors:Hettle, A.G, Boraston, A.B.
Deposit date:2017-09-14
Release date:2018-03-14
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The Molecular Basis of Polysaccharide Sulfatase Activity and a Nomenclature for Catalytic Subsites in this Class of Enzyme.
Structure, 26, 2018
5KDX
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BU of 5kdx by Molmil
IMPa metallopeptidase in complex with T-antigen
Descriptor: 1,2-ETHANEDIOL, Metallopeptidase, PHOSPHATE ION, ...
Authors:Noach, I, Boraston, A.B.
Deposit date:2016-06-08
Release date:2017-01-11
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Recognition of protein-linked glycans as a determinant of peptidase activity.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5KD5
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BU of 5kd5 by Molmil
BT_4244 metallopeptidase from Bacteroides thetaiotaomicron
Descriptor: 1,2-ETHANEDIOL, Metallopeptidase, PHOSPHATE ION, ...
Authors:Noach, I, Boraston, A.B.
Deposit date:2016-06-07
Release date:2017-01-11
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Recognition of protein-linked glycans as a determinant of peptidase activity.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017

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