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PDB: 235 件
5UUO
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Crystal structure of SARO_2595 from Novosphingobium aromaticivorans
分子名称: 1,2-ETHANEDIOL, GLUTATHIONE, Glutathione S-transferase-like protein, ...
著者Bingman, C.A, Kontur, W.S, Olmsted, C.N, Fox, B.G, Donohue, T.J.
登録日2017-02-17
公開日2018-02-28
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献Novosphingobium aromaticivoransuses a Nu-class glutathioneS-transferase as a glutathione lyase in breaking the beta-aryl ether bond of lignin.
J. Biol. Chem., 293, 2018
116D
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BU of 116d by Molmil
CRYSTAL AND MOLECULAR STRUCTURE OF THE A-DNA DODECAMER D(CCGTACGTACGG): CHOICE OF FRAGMENT HELICAL AXIS
分子名称: DNA (5'-D(*CP*CP*GP*TP*AP*CP*GP*TP*AP*CP*GP*G)-3')
著者Bingman, C.A, Zon, G, Sundaralingam, M.
登録日1993-02-10
公開日1993-04-15
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal and molecular structure of the A-DNA dodecamer d(CCGTACGTACGG). Choice of fragment helical axis.
J.Mol.Biol., 227, 1992
117D
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BU of 117d by Molmil
CRYSTAL AND MOLECULAR STRUCTURE OF THE ALTERNATING DODECAMER D(GCGTACGTACGC) IN THE A-DNA FORM: COMPARISON WITH THE ISOMORPHOUS NON-ALTERNATING DODECAMER D(CCGTACGTACGG)
分子名称: DNA (5'-D(*GP*CP*GP*TP*AP*CP*GP*TP*AP*CP*GP*C)-3')
著者Bingman, C.A, Jain, S, Zon, G, Sundaralingam, M.
登録日1993-02-10
公開日1993-04-15
最終更新日2023-03-22
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Crystal and molecular structure of the alternating dodecamer d(GCGTACGTACGC) in the A-DNA form: comparison with the isomorphous non-alternating dodecamer d(CCGTACGTACGG).
Nucleic Acids Res., 20, 1992
118D
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BU of 118d by Molmil
CRYSTAL AND MOLECULAR STRUCTURE OF D(GTGCGCAC): INVESTIGATION OF THE EFFECTS OF BASE SEQUENCE ON THE CONFORMATION OF OCTAMER DUPLEXES
分子名称: DNA (5'-D(*GP*TP*GP*CP*GP*CP*AP*C)-3')
著者Bingman, C.A, Li, X, Zon, G, Sundaralingam, M.
登録日1993-02-11
公開日1993-02-11
最終更新日2023-03-22
実験手法X-RAY DIFFRACTION (1.64 Å)
主引用文献Crystal and molecular structure of d(GTGCGCAC): investigation of the effects of base sequence on the conformation of octamer duplexes.
Biochemistry, 31, 1992
6MQ4
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BU of 6mq4 by Molmil
GH5-4 broad specificity endoglucanase from Hungateiclostridium cellulolyticum
分子名称: DI(HYDROXYETHYL)ETHER, TETRAETHYLENE GLYCOL, TRIETHYLENE GLYCOL, ...
著者Bingman, C.A, Smith, R.W, Glasgow, E.M, Fox, B.G.
登録日2018-10-09
公開日2019-11-13
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献A structural and kinetic survey of GH5_4 endoglucanases reveals determinants of broad substrate specificity and opportunities for biomass hydrolysis.
J.Biol.Chem., 295, 2020
6AWL
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BU of 6awl by Molmil
Crystal structure of human Coq9
分子名称: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE, Ubiquinone biosynthesis protein COQ9, ...
著者Bingman, C.A, Lohman, D.C, Smith, R.W, Pagliarini, D.J, Mitochondrial Protein Partnership (MPP)
登録日2017-09-05
公開日2019-02-06
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献An Isoprene Lipid-Binding Protein Promotes Eukaryotic Coenzyme Q Biosynthesis.
Mol. Cell, 73, 2019
5I35
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Structure of the Human mitochondrial kinase COQ8A R611K with AMPPNP (Cerebellar Ataxia and Ubiquinone Deficiency Through Loss of Unorthodox Kinase Activity)
分子名称: Atypical kinase ADCK3, mitochondrial, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
著者Bingman, C.A, Stefely, J.A, Pagliarini, D.J, Mitochondrial Protein Partnership (MPP)
登録日2016-02-09
公開日2016-08-17
最終更新日2019-12-25
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Cerebellar Ataxia and Coenzyme Q Deficiency through Loss of Unorthodox Kinase Activity.
Mol.Cell, 63, 2016
7UDQ
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BU of 7udq by Molmil
Crystal structure of COQ8A-CA157 inhibitor complex in space group P1
分子名称: 4-[(3,4,5-trimethoxyphenyl)amino]quinoline-7-carbonitrile, Atypical kinase COQ8A, mitochondrial, ...
著者Bingman, C.A, Murray, N, Smith, R.W, Pagliarini, D.J.
登録日2022-03-20
公開日2023-01-18
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Small-molecule inhibition of the archetypal UbiB protein COQ8.
Nat.Chem.Biol., 19, 2023
7UDP
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Crystal structure of COQ8A-CA157 inhibitor complex in space group C2
分子名称: 4-[(3,4,5-trimethoxyphenyl)amino]quinoline-7-carbonitrile, Atypical kinase COQ8A, mitochondrial
著者Bingman, C.A, Murray, N, Smith, R.W, Pagliarini, D.J.
登録日2022-03-20
公開日2023-01-18
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.01 Å)
主引用文献Small-molecule inhibition of the archetypal UbiB protein COQ8.
Nat.Chem.Biol., 19, 2023
6WQY
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BU of 6wqy by Molmil
GH5-4 broad specificity endoglucanase from Bacteroides salanitronis
分子名称: CHLORIDE ION, Cellulase, MAGNESIUM ION
著者Bingman, C.A, Smith, R.W, Glasgow, E.M, Fox, B.G.
登録日2020-04-29
公開日2020-11-18
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.05 Å)
主引用文献A structural and kinetic survey of GH5_4 endoglucanases reveals determinants of broad substrate specificity and opportunities for biomass hydrolysis.
J.Biol.Chem., 295, 2020
6XSU
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BU of 6xsu by Molmil
GH5-4 broad specificity endoglucanase from Ruminococcus flavefaciens
分子名称: ETHANOL, GH5-4 broad specificity endoglucanase
著者Bingman, C.A, Smith, R.W, Glasgow, E.M, Fox, B.G.
登録日2020-07-16
公開日2020-11-18
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.41 Å)
主引用文献A structural and kinetic survey of GH5_4 endoglucanases reveals determinants of broad substrate specificity and opportunities for biomass hydrolysis.
J.Biol.Chem., 295, 2020
6XRK
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BU of 6xrk by Molmil
GH5-4 broad specificity endoglucanase from an uncultured bovine rumen ciliate
分子名称: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
著者Bingman, C.A, Smith, R.W, Glasgow, E.M, Fox, B.G.
登録日2020-07-13
公開日2020-10-28
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.419 Å)
主引用文献A structural and kinetic survey of GH5_4 endoglucanases reveals determinants of broad substrate specificity and opportunities for biomass hydrolysis.
J.Biol.Chem., 295, 2020
6XSO
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GH5-4 broad specificity endoglucanase from an uncultured bacterium
分子名称: (2S)-2-hydroxybutanedioic acid, Cellulase, DI(HYDROXYETHYL)ETHER, ...
著者Bingman, C.A, Smith, R.W, Glasgow, E.M, Fox, B.G.
登録日2020-07-15
公開日2020-11-18
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献A structural and kinetic survey of GH5_4 endoglucanases reveals determinants of broad substrate specificity and opportunities for biomass hydrolysis.
J.Biol.Chem., 295, 2020
7V0J
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BU of 7v0j by Molmil
Crystal structure of a CelR catalytic domain active site mutant with bound cellobiose product
分子名称: CALCIUM ION, Glucanase, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose
著者Bingman, C.A, Kuch, N, Kutsche, M.E, Parker, A, Smith, R.W, Fox, B.G.
登録日2022-05-10
公開日2023-04-05
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Contribution of calcium ligands in substrate binding and product release in the Acetovibrio thermocellus glycoside hydrolase family 9 cellulase CelR.
J.Biol.Chem., 299, 2023
7UNP
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BU of 7unp by Molmil
Crystal structure of the CelR catalytic domain and CBM3c
分子名称: CALCIUM ION, Glucanase
著者Bingman, C.A, Kuch, N, Kutsche, M.E, Parker, A, Smith, R.W, Fox, B.G.
登録日2022-04-11
公開日2023-04-05
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Contribution of calcium ligands in substrate binding and product release in the Acetovibrio thermocellus glycoside hydrolase family 9 cellulase CelR.
J.Biol.Chem., 299, 2023
7V0I
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Crystal structure of a CelR catalytic domain active site mutant with bound cellohexaose substrate
分子名称: CALCIUM ION, Glucanase, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose
著者Bingman, C.A, Kuch, N, Kutsche, M.E, Parker, A, Smith, R.W, Fox, B.G.
登録日2022-05-10
公開日2023-04-05
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Contribution of calcium ligands in substrate binding and product release in the Acetovibrio thermocellus glycoside hydrolase family 9 cellulase CelR.
J.Biol.Chem., 299, 2023
6DEW
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BU of 6dew by Molmil
Structure of human COQ9 protein with bound isoprene.
分子名称: (2E,6E)-3,7,11-trimethyldodeca-2,6,10-trien-1-ol, (2Z,6E)-3,7,11-trimethyldodeca-2,6,10-trien-1-ol, (2Z,6Z)-3,7,11-trimethyldodeca-2,6,10-trien-1-ol, ...
著者Bingman, C.A, Lohman, D.C, Smith, R.W, Pagliarini, D.J.
登録日2018-05-13
公開日2019-02-06
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献An Isoprene Lipid-Binding Protein Promotes Eukaryotic Coenzyme Q Biosynthesis.
Mol.Cell, 73, 2019
7RIZ
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BU of 7riz by Molmil
Crystal structure of RPA3624, a beta-propeller lactonase from Rhodopseudomonas palustris, with active-site bound 2-hydroxyquinoline
分子名称: Beta-propeller lactonase, CALCIUM ION, QUINOLIN-2(1H)-ONE, ...
著者Bingman, C.A, Hall, B.W, Smith, R.W, Fox, B.G, Donohue, T.J.
登録日2021-07-20
公開日2023-01-11
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.71 Å)
主引用文献A broad specificity beta-propeller enzyme from Rhodopseudomonas palustris that hydrolyzes many lactones including gamma-valerolactone.
J.Biol.Chem., 299, 2022
7RIS
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BU of 7ris by Molmil
Crystal structure of RPA3624, a beta-propeller lactonase from Rhodopseudomonas palustris, with active-site bound phosphate
分子名称: Beta-propeller lactonase, CALCIUM ION, PHOSPHATE ION, ...
著者Bingman, C.A, Hall, B.W, Smith, R.W, Fox, B.G, Donohue, T.J.
登録日2021-07-20
公開日2023-01-11
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (1.72 Å)
主引用文献A broad specificity beta-propeller enzyme from Rhodopseudomonas palustris that hydrolyzes many lactones including gamma-valerolactone.
J.Biol.Chem., 299, 2022
8DK0
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BU of 8dk0 by Molmil
Crystal structure of RPA3624, a beta-propeller lactonase from Rhodopseudomonas palustris, with active-site bound (S)gamma-valerolactone
分子名称: CALCIUM ION, Gluconolactonase, SODIUM ION, ...
著者Bingman, C.A, Hall, B.W, Smith, R.W, Fox, B.G, Donohue, T.J.
登録日2022-07-01
公開日2023-01-11
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献A broad specificity beta-propeller enzyme from Rhodopseudomonas palustris that hydrolyzes many lactones including gamma-valerolactone.
J.Biol.Chem., 299, 2022
8DJF
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BU of 8djf by Molmil
Crystal structure of RPA3624, a beta-propeller lactonase from Rhodopseudomonas palustris, with active-site bound tetrahedral intermediate
分子名称: (5S)-5-methyloxolane-2,2-diol, CALCIUM ION, Gluconolactonase, ...
著者Bingman, C.A, Hall, B.W, Smith, R.W, Fox, B.G, Donohue, T.J.
登録日2022-06-30
公開日2023-01-11
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献A broad specificity beta-propeller enzyme from Rhodopseudomonas palustris that hydrolyzes many lactones including gamma-valerolactone.
J.Biol.Chem., 299, 2022
8DJZ
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BU of 8djz by Molmil
Crystal structure of RPA3624, a beta-propeller lactonase from Rhodopseudomonas palustris, with active-site bound product
分子名称: (4R)-4-hydroxypentanoic acid, CALCIUM ION, Gluconolactonase, ...
著者Bingman, C.A, Hall, B.W, Smith, R.W, Fox, B.G, Donohue, T.J.
登録日2022-07-01
公開日2023-01-11
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献A broad specificity beta-propeller enzyme from Rhodopseudomonas palustris that hydrolyzes many lactones including gamma-valerolactone.
J.Biol.Chem., 299, 2022
8EW8
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BU of 8ew8 by Molmil
Crystal structure of Saccharomyces cerevisiae Altered Inheritance rate of Mitochondria protein 18 (AIM18p) R123A mutant
分子名称: Altered inheritance of mitochondria protein 18, mitochondrial, SULFATE ION
著者Bingman, C.A, Schmitz, J.M, Smith, R.W, Pagliarini, D.J.
登録日2022-10-21
公開日2023-03-22
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Aim18p and Aim46p are chalcone isomerase domain-containing mitochondrial hemoproteins in Saccharomyces cerevisiae.
J.Biol.Chem., 299, 2023
8EW9
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Crystal structure of Saccharomyces cerevisiae Altered Inheritance rate of Mitochondria protein 46 (AIM46p)
分子名称: 2-OXOGLUTARIC ACID, Altered inheritance of mitochondria protein 46, mitochondrial
著者Bingman, C.A, Schmitz, J.M, Smith, R.W, Pagliarini, D.J, Mitochondrial Protein Partnership (MPP)
登録日2022-10-21
公開日2023-03-22
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Aim18p and Aim46p are chalcone isomerase domain-containing mitochondrial hemoproteins in Saccharomyces cerevisiae.
J.Biol.Chem., 299, 2023
7MKT
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BU of 7mkt by Molmil
Crystal structure of r(GU)11G-NMM complex
分子名称: N-METHYLMESOPORPHYRIN, POTASSIUM ION, RNA (5'-R(*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*G)-3')
著者Bingman, C.A, Roschdi, S, Nomura, Y, Butcher, S.E.
登録日2021-04-26
公開日2022-11-02
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (1.97 Å)
主引用文献An atypical RNA quadruplex marks RNAs as vectors for gene silencing.
Nat.Struct.Mol.Biol., 29, 2022

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