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PDB: 268 results

1TNE
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BU of 1tne by Molmil
NMR STUDY OF Z-DNA AT PHYSIOLOGICAL SALT CONDITIONS, MINIMIZED AVERAGE STRUCTURE
Descriptor: DNA (5'-D(*CP*GP*CP*(8MG)P*CP*G)-3')
Authors:Robinson, H, Wang, A.H.-J, Sugiyama, H, Kawai, K, Matsunaga, A, Fujimoto, K, Saito, I.
Deposit date:1996-02-13
Release date:1996-07-11
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Synthesis, structure and thermodynamic properties of 8-methylguanine-containing oligonucleotides: Z-DNA under physiological salt conditions.
Nucleic Acids Res., 24, 1996
7DKK
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BU of 7dkk by Molmil
De novo design protein XM2H
Descriptor: De novo design protein XM2H
Authors:Bin, H.
Deposit date:2020-11-24
Release date:2021-12-08
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:A backbone-centred energy function of neural networks for protein design.
Nature, 602, 2022
7DKO
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BU of 7dko by Molmil
De novo design protein AM2M
Descriptor: de novo designed protein AM2M
Authors:Bin, H.
Deposit date:2020-11-25
Release date:2021-12-08
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:A backbone-centred energy function of neural networks for protein design.
Nature, 602, 2022
7FBD
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BU of 7fbd by Molmil
De novo design protein D53 with MBP tag
Descriptor: Maltodextrin-binding protein,De novo design protein D53
Authors:Bin, H.
Deposit date:2021-07-09
Release date:2021-12-22
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:A backbone-centred energy function of neural networks for protein design.
Nature, 602, 2022
7FBB
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BU of 7fbb by Molmil
De novo design protein D12 with MBP tag
Descriptor: Maltodextrin-binding protein,de novo designed protein D12
Authors:Bin, H.
Deposit date:2021-07-09
Release date:2021-12-22
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.307 Å)
Cite:A backbone-centred energy function of neural networks for protein design.
Nature, 602, 2022
7FBC
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BU of 7fbc by Molmil
De novo design protein D22 with MBP tag
Descriptor: Maltodextrin-binding protein,De novo design protein D22
Authors:Bin, H.
Deposit date:2021-07-09
Release date:2021-12-22
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:A backbone-centred energy function of neural networks for protein design.
Nature, 602, 2022
5D6M
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BU of 5d6m by Molmil
Mn(II)-loaded MnCcP.1
Descriptor: Cytochrome c peroxidase, mitochondrial, MANGANESE (II) ION, ...
Authors:Robinson, H, Gao, Y.-G, Hosseinzadeh, P, Lu, Y.
Deposit date:2015-08-12
Release date:2016-03-09
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.653 Å)
Cite:Enhancing Mn(II)-Binding and Manganese Peroxidase Activity in a Designed Cytochrome c Peroxidase through Fine-Tuning Secondary-Sphere Interactions.
Biochemistry, 55, 2016
1AL9
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BU of 1al9 by Molmil
NMR STUDY OF DNA (5'-D(*AP*CP*GP*TP*AP*CP*GP*T)-3') SELF-COMPLEMENTARY DUPLEX COMPLEXED WITH A BIS-DAUNORUBICIN, MINIMIZED AVERAGE STRUCTURE
Descriptor: 4-METHYLBENZYL-N-BIS[DAUNOMYCIN], DNA (5'-D(*AP*CP*GP*TP*AP*CP*GP*T)-3')
Authors:Robinson, H, Wang, A.H.-J.
Deposit date:1997-06-12
Release date:1997-09-17
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Binding of two novel bisdaunorubicins to DNA studied by NMR spectroscopy.
Biochemistry, 36, 1997
1AMD
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BU of 1amd by Molmil
NMR STUDY OF DNA (5'-D(*TP*GP*TP*AP*CP*A)-3') SELF-COMPLEMENTARY DUPLEX COMPLEXED WITH A BIS-DAUNORUBICIN WP-652, MINIMIZED AVERAGE STRUCTURE
Descriptor: BIS-DAUNORUBICIN, DNA (5'-D(*TP*GP*TP*AP*CP*A)-3')
Authors:Robinson, H, Wang, A.H.-J.
Deposit date:1997-06-12
Release date:1997-09-17
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Binding of two novel bisdaunorubicins to DNA studied by NMR spectroscopy.
Biochemistry, 36, 1997
3NJ2
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BU of 3nj2 by Molmil
Crystal structure of cce_0566 from the cyanobacterium Cyanothece 51142, a protein associated with nitrogen fixation from the DUF269 family
Descriptor: DUF269-containing protein
Authors:Robinson, H, Ralston, C.Y, Addlagatta, A, Buchko, G.W.
Deposit date:2010-06-16
Release date:2010-07-07
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Crystal structure of cce_0566 from Cyanothece 51142, a protein associated with nitrogen fixation in the DUF269 family.
Febs Lett., 586, 2012
403D
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BU of 403d by Molmil
5'-D(*CP*GP*CP*(HYD)AP*AP*AP*TP*TP*TP*GP*CP*G)-3', 2'-(4-ETHOXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE
Descriptor: 2'-(4-ETHOXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE, DNA (5'-D(*CP*GP*CP*(IGU)P*AP*AP*TP*TP*TP*GP*CP*G)-3'), MAGNESIUM ION
Authors:Robinson, H, Gao, Y.-G, Bauer, C, Roberts, C, Switzer, C, Wang, A.H.-J.
Deposit date:1998-06-10
Release date:1998-07-06
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:2'-Deoxyisoguanosine adopts more than one tautomer to form base pairs with thymidine observed by high-resolution crystal structure analysis.
Biochemistry, 37, 1998
1I3W
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BU of 1i3w by Molmil
ACTINOMYCIN D BINDING TO CGATCGATCG
Descriptor: 5'-D(*C*GP*AP*TP*CP*GP*AP*(BRU)P*CP*GP)-3', ACTINOMYCIN D
Authors:Robinson, H, Gao, Y.-G, Yang, X.-L, Sanishvili, R, Joachimiak, A, Wang, A.H.-J.
Deposit date:2001-02-17
Release date:2001-05-21
Last modified:2024-07-10
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystallographic Analysis of a Novel Complex of Actinomycin D Bound to the DNA Decamer Cgatcgatcg.
Biochemistry, 40, 2001
1AZP
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BU of 1azp by Molmil
HYPERTHERMOPHILE CHROMOSOMAL PROTEIN SAC7D BOUND WITH KINKED DNA DUPLEX
Descriptor: DNA (5'-D(*GP*CP*GP*AP*TP*CP*GP*C)-3'), PROTEIN (HYPERTHERMOPHILE CHROMOSOMAL PROTEIN SAC7D)
Authors:Robinson, H, Gao, Y.-G, Mccrary, B.S, Edmondson, S.P, Shriver, J.W, Wang, A.H.-J.
Deposit date:1997-11-19
Release date:1999-01-13
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The hyperthermophile chromosomal protein Sac7d sharply kinks DNA.
Nature, 392, 1998
1BHR
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BU of 1bhr by Molmil
2'-DEOXY-ISOGUANOSINE BASE PAIRED TO THYMIDINE, NMR, MINIMIZED AVERAGE STRUCTURE
Descriptor: DNA (5'-D(*CP*GP*CP*IGUP*AP*AP*TP*TP*TP*GP*CP*G)-3')
Authors:Robinson, H, Gao, Y.-G, Bauer, C, Roberts, C, Switzer, C, Wang, A.H.-J.
Deposit date:1998-06-10
Release date:1998-11-04
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:2'-Deoxyisoguanosine adopts more than one tautomer to form base pairs with thymidine observed by high-resolution crystal structure analysis.
Biochemistry, 37, 1998
1AZQ
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BU of 1azq by Molmil
HYPERTHERMOPHILE CHROMOSOMAL PROTEIN SAC7D BOUND WITH KINKED DNA DUPLEX
Descriptor: DNA (5'-D(*GP*TP*AP*AP*TP*TP*AP*C)-3'), PROTEIN (HYPERTHERMOPHILE CHROMOSOMAL PROTEIN SAC7D)
Authors:Robinson, H, Gao, Y.-G, Mccrary, B.S, Edmondson, S.P, Shriver, J.W, Wang, A.H.-J.
Deposit date:1997-11-20
Release date:1999-01-13
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:The hyperthermophile chromosomal protein Sac7d sharply kinks DNA.
Nature, 392, 1998
1CC3
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BU of 1cc3 by Molmil
PURPLE CUA CENTER
Descriptor: COPPER (II) ION, PROTEIN (CUA AZURIN)
Authors:Robinson, H, Ang, M.C, Gao, Y.-G, Hay, M.T, Lu, Y, Wang, A.H.-J.
Deposit date:1999-03-03
Release date:1999-12-23
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural basis of electron transfer modulation in the purple CuA center.
Biochemistry, 38, 1999
1DNO
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BU of 1dno by Molmil
A-DNA/RNA DODECAMER R(GCG)D(TATACGC) MG BINDING SITES
Descriptor: DNA/RNA (5'-R(*GP*CP*GP)-D(*TP*AP*TP*AP*CP*GP*C)-3'), MAGNESIUM ION
Authors:Robinson, H, Gao, Y.-G, Sanishvili, R, Joachimiak, A, Wang, A.H.-J.
Deposit date:1999-12-16
Release date:2000-04-10
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Hexahydrated magnesium ions bind in the deep major groove and at the outer mouth of A-form nucleic acid duplexes.
Nucleic Acids Res., 28, 2000
1DNZ
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BU of 1dnz by Molmil
A-DNA DECAMER ACCGGCCGGT WITH MAGNESIUM BINDING SITES
Descriptor: DNA (5'-D(*AP*CP*CP*GP*GP*CP*CP*GP*GP*T)-3'), MAGNESIUM ION
Authors:Robinson, H, Gao, Y.-G, Sanishvili, R, Joachimiak, A, Wang, A.H.-J.
Deposit date:1999-12-17
Release date:2000-04-10
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Hexahydrated magnesium ions bind in the deep major groove and at the outer mouth of A-form nucleic acid duplexes.
Nucleic Acids Res., 28, 2000
1DNT
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BU of 1dnt by Molmil
RNA/DNA DODECAMER R(GC)D(GTATACGC) WITH MAGNESIUM BINDING SITES
Descriptor: DNA/RNA (5'-R(*GP*CP)-D(*GP*TP*AP*TP*AP*CP*GP*C)-3'), MAGNESIUM ION
Authors:Robinson, H, Gao, Y.-G, Sanishvili, R, Joachimiak, A, Wang, A.H.-J.
Deposit date:1999-12-16
Release date:2000-04-10
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Hexahydrated magnesium ions bind in the deep major groove and at the outer mouth of A-form nucleic acid duplexes.
Nucleic Acids Res., 28, 2000
1DNX
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BU of 1dnx by Molmil
RNA/DNA DODECAMER R(G)D(CGTATACGC) WITH MAGNESIUM BINDING SITES
Descriptor: DNA/RNA (5'-R(*GP)-D(*CP*GP*TP*AP*TP*AP*CP*GP*C)-3'), MAGNESIUM ION
Authors:Robinson, H, Gao, Y.-G, Sanishvili, R, Joachimiak, A, Wang, A.H.-J.
Deposit date:1999-12-16
Release date:2000-04-10
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Hexahydrated magnesium ions bind in the deep major groove and at the outer mouth of A-form nucleic acid duplexes.
Nucleic Acids Res., 28, 2000
3K3H
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BU of 3k3h by Molmil
Crystal structure of the PDE9A catalytic domain in complex with (S)-BAY73-6691
Descriptor: 1-(2-chlorophenyl)-6-[(2S)-3,3,3-trifluoro-2-methylpropyl]-1,7-dihydro-4H-pyrazolo[3,4-d]pyrimidin-4-one, High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A, MAGNESIUM ION, ...
Authors:Wang, H, Luo, X, Ye, M, Hou, J, Robinson, H, Ke, H.
Deposit date:2009-10-02
Release date:2010-02-16
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Insight into Binding of Phosphodiesterase-9A Selective Inhibitors by Crystal Structures and Mutagenesis
J.Med.Chem., 53, 2010
4WCJ
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BU of 4wcj by Molmil
Structure of IcaB from Ammonifex degensii
Descriptor: CHLORIDE ION, Polysaccharide deacetylase, ZINC ION
Authors:Little, D.J, Bamford, N.C, Pokrovskaya, V, Robinson, H, Nitz, M, Howell, P.L.
Deposit date:2014-09-04
Release date:2014-11-12
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural Basis for the De-N-acetylation of Poly-beta-1,6-N-acetyl-d-glucosamine in Gram-positive Bacteria.
J.Biol.Chem., 289, 2014
2OUR
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BU of 2our by Molmil
crystal structure of PDE10A2 mutant D674A in complex with cAMP
Descriptor: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, MAGNESIUM ION, cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A
Authors:Wang, H.C, Liu, Y.D, Hou, J, Zheng, M.Y, Robinson, H.
Deposit date:2007-02-12
Release date:2007-03-20
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:From the Cover: Structural insight into substrate specificity of phosphodiesterase 10.
Proc.Natl.Acad.Sci.Usa, 104, 2007
2OUN
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BU of 2oun by Molmil
crystal structure of PDE10A2 in complex with AMP
Descriptor: ADENOSINE MONOPHOSPHATE, MAGNESIUM ION, ZINC ION, ...
Authors:Wang, H.C, Liu, Y.D, Hou, J, Zheng, M.Y, Robinson, H, Ke, H.M.
Deposit date:2007-02-12
Release date:2007-03-20
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:From the Cover: Structural insight into substrate specificity of phosphodiesterase 10.
Proc.Natl.Acad.Sci.Usa, 104, 2007
2OUU
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BU of 2ouu by Molmil
crystal structure of PDE10A2 mutant D674A in complex with cGMP
Descriptor: GUANOSINE-3',5'-MONOPHOSPHATE, MAGNESIUM ION, cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A
Authors:Wang, H.C, Liu, Y.D, Hou, J, Zheng, M.Y, Robinson, H.
Deposit date:2007-02-12
Release date:2007-03-20
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:From the Cover: Structural insight into substrate specificity of phosphodiesterase 10.
Proc.Natl.Acad.Sci.Usa, 104, 2007

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數據於2024-08-28公開中

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