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PDB: 148 results

1Z5A
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Topoisomerase VI-B, ADP-bound dimer form
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Type II DNA topoisomerase VI subunit B
Authors:Corbett, K.D, Berger, J.M.
Deposit date:2005-03-17
Release date:2005-06-14
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural dissection of ATP turnover in the prototypical GHL ATPase TopoVI.
Structure, 13, 2005
1Z59
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Topoisomerase VI-B, ADP-bound monomer form
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Type II DNA topoisomerase VI subunit B
Authors:Corbett, K.D, Berger, J.M.
Deposit date:2005-03-17
Release date:2005-06-14
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural dissection of ATP turnover in the prototypical GHL ATPase TopoVI.
Structure, 13, 2005
3E2K
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Crystal Structure of the KPC-2 Beta-lactamase/Beta-lactamase inhibitor protein (BLIP)
Descriptor: Beta-lactamase inhibitory protein, Carbapenemase
Authors:Hanes, M.S, Jude, K.M, Berger, J.M, Bonomo, R.A, Handel, T.M.
Deposit date:2008-08-05
Release date:2009-08-04
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural and biochemical characterization of the interaction between KPC-2 beta-lactamase and beta-lactamase inhibitor protein
Biochemistry, 48, 2009
1SUU
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Structure of DNA gyrase A C-terminal domain
Descriptor: DNA gyrase subunit A
Authors:Corbett, K.D, Shultzaberger, R.K, Berger, J.M.
Deposit date:2004-03-26
Release date:2004-04-27
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:The C-terminal domain of DNA gyrase A adopts a DNA-bending beta-pinwheel fold.
Proc.Natl.Acad.Sci.Usa, 101, 2004
1PVO
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X-ray crystal structure of Rho transcription termination factor in complex with ssRNA substrate and ANPPNP
Descriptor: 5'-R(P*UP*C)-3', PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Transcription termination factor rho
Authors:Skordalakes, E, Berger, J.M.
Deposit date:2003-06-27
Release date:2003-07-22
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure of the Rho transcription terminator: mechanism of mRNA recognition and helicase loading
Cell(Cambridge,Mass.), 114, 2003
1PV4
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X-ray crystal structure of the Rho transcription termination factor in complex with single stranded DNA
Descriptor: 5'-D(P*CP*C)-3', Transcription termination factor rho
Authors:Skordalakes, E, Berger, J.M.
Deposit date:2003-06-26
Release date:2003-07-22
Last modified:2018-01-31
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure of the Rho transcription terminator: mechanism of mRNA recognition and helicase loading
Cell(Cambridge,Mass.), 114, 2003
2A11
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Crystal Structure of Nuclease Domain of Ribonuclase III from Mycobacterium Tuberculosis
Descriptor: CALCIUM ION, Ribonuclease III
Authors:Akey, D.L, Berger, J.M, Mycobacterium Tuberculosis Structural Proteomics Project (XMTB)
Deposit date:2005-06-17
Release date:2005-07-05
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of the nuclease domain of ribonuclease III from M. tuberculosis at 2.1 A
Protein Sci., 14, 2005
1D3Y
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STRUCTURE OF THE DNA TOPOISOMERASE VI A SUBUNIT
Descriptor: DNA TOPOISOMERASE VI A SUBUNIT, MAGNESIUM ION, SODIUM ION
Authors:Nichols, M.D, DeAngelis, K.A, Keck, J.L, Berger, J.M.
Deposit date:1999-10-01
Release date:1999-11-05
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure and function of an archaeal topoisomerase VI subunit with homology to the meiotic recombination factor Spo11.
EMBO J., 18, 1999
1QDW
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N-TERMINAL DOMAIN, VOLTAGE-GATED POTASSIUM CHANNEL KV1.2 RESIDUES 33-119
Descriptor: KV1.2 VOLTAGE-GATED POTASSIUM CHANNEL
Authors:Minor Jr, D.L, Lin, Y.-F, Mobley, B.C, Avelar, A, Jan, Y.N, Jan, L.Y, Berger, J.M.
Deposit date:1999-07-10
Release date:2000-09-20
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The polar T1 interface is linked to conformational changes that open the voltage-gated potassium channel.
Cell(Cambridge,Mass.), 102, 2000
2Q2E
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Crystal structure of the topoisomerase VI holoenzyme from Methanosarcina mazei
Descriptor: Type 2 DNA topoisomerase 6 subunit B, Type II DNA topoisomerase VI subunit A
Authors:Corbett, K.D, Benedetti, P, Berger, J.M.
Deposit date:2007-05-28
Release date:2007-07-10
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (4 Å)
Cite:Holoenzyme assembly and ATP-mediated conformational dynamics of topoisomerase VI
Nat.Struct.Mol.Biol., 14, 2007
1AOL
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FRIEND MURINE LEUKEMIA VIRUS RECEPTOR-BINDING DOMAIN
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, GP70, ZINC ION
Authors:Fass, D, Davey, R.A, Hamson, C.A, Kim, P.S, Cunningham, J.M, Berger, J.M.
Deposit date:1997-07-08
Release date:1997-10-15
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of a murine leukemia virus receptor-binding glycoprotein at 2.0 angstrom resolution.
Science, 277, 1997
1DDE
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STRUCTURE OF THE DNAG CATALYTIC CORE
Descriptor: DNA PRIMASE, YTTRIUM ION
Authors:Keck, J.L, Roche, D.D, Lynch, A.S, Berger, J.M.
Deposit date:1999-11-09
Release date:2000-04-07
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure of the RNA polymerase domain of E. coli primase.
Science, 287, 2000
1DD9
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STRUCTURE OF THE DNAG CATALYTIC CORE
Descriptor: DNA PRIMASE, STRONTIUM ION
Authors:Keck, J.L, Roche, D.D, Lynch, A.S, Berger, J.M.
Deposit date:1999-11-09
Release date:2000-04-07
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure of the RNA polymerase domain of E. coli primase.
Science, 287, 2000
1F21
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BU of 1f21 by Molmil
DIVALENT METAL COFACTOR BINDING IN THE KINETIC FOLDING TRAJECTORY OF E. COLI RIBONUCLEASE HI
Descriptor: RIBONUCLEASE HI
Authors:Goedken, E.R, Keck, J.L, Berger, J.M, Marqusee, S.
Deposit date:2000-05-22
Release date:2000-12-06
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Divalent metal cofactor binding in the kinetic folding trajectory of Escherichia coli ribonuclease HI.
Protein Sci., 9, 2000
4LIM
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BU of 4lim by Molmil
Crystal structure of the catalytic subunit of yeast primase
Descriptor: DNA primase small subunit, ZINC ION
Authors:Vaithiyalingam, S, Chazin, W.J, Berger, J.M, Corn, J, Stephenson, S.
Deposit date:2013-07-02
Release date:2013-12-18
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Insights into Eukaryotic Primer Synthesis from Structures of the p48 Subunit of Human DNA Primase.
J.Mol.Biol., 426, 2014
1DSX
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KV1.2 T1 DOMAIN, RESIDUES 33-119, T46V MUTANT
Descriptor: PROTEIN (KV1.2 VOLTAGE-GATED POTASSIUM CHANNEL)
Authors:Minor Jr, D.L, Lin, Y.-F, Mobley, B.C, Avelar, A, Jan, Y.N, Jan, L.Y, Berger, J.M.
Deposit date:2000-01-10
Release date:2000-09-20
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The polar T1 interface is linked to conformational changes that open the voltage-gated potassium channel.
Cell(Cambridge,Mass.), 102, 2000
1QDV
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BU of 1qdv by Molmil
N-TERMINAL DOMAIN, VOLTAGE-GATED POTASSIUM CHANNEL KV1.2 RESIDUES 33-131
Descriptor: KV1.2 VOLTAGE-GATED POTASSIUM CHANNEL
Authors:Minor Jr, D.L, Lin, Y.-F, Mobley, B.C, Yu, M, Jan, Y.N, Jan, L.Y, Berger, J.M.
Deposit date:1999-07-10
Release date:2000-09-20
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The polar T1 interface is linked to conformational changes that open the voltage-gated potassium channel.
Cell(Cambridge,Mass.), 102, 2000
1QZR
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CRYSTAL STRUCTURE OF THE ATPASE REGION OF SACCHAROMYCES CEREVISIAE TOPOISOMERASE II BOUND TO ICRF-187 (DEXRAZOXANE)
Descriptor: (S)-4,4'-(1-METHYL-1,2-ETHANEDIYL)BIS-2,6-PIPERAZINEDIONE, DNA topoisomerase II, MAGNESIUM ION, ...
Authors:Classen, S, Olland, S, Berger, J.M.
Deposit date:2003-09-17
Release date:2003-09-30
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of the topoisomerase II ATPase region and its mechanism of inhibition by the chemotherapeutic agent ICRF-187
Proc.Natl.Acad.Sci.USA, 100, 2003
1PVG
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Crystal Structure of the ATPase region of Saccharomyces Cerevisiae topoisomerase II
Descriptor: DNA topoisomerase II, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Classen, S, Olland, S, Berger, J.M.
Deposit date:2003-06-27
Release date:2003-08-26
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of the topoisomerase II ATPase region and its mechanism of inhibition by the chemotherapeutic agent ICRF-187
Proc.Natl.Acad.Sci.USA, 100, 2003
1AJJ
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BU of 1ajj by Molmil
LDL RECEPTOR LIGAND-BINDING MODULE 5, CALCIUM-COORDINATING
Descriptor: CALCIUM ION, LOW-DENSITY LIPOPROTEIN RECEPTOR, SULFATE ION
Authors:Fass, D, Blacklow, S.C, Kim, P.S, Berger, J.M.
Deposit date:1997-05-04
Release date:1997-07-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Molecular basis of familial hypercholesterolaemia from structure of LDL receptor module.
Nature, 388, 1997
1AIK
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BU of 1aik by Molmil
HIV GP41 CORE STRUCTURE
Descriptor: HIV-1 GP41 GLYCOPROTEIN
Authors:Chan, D.C, Fass, D, Berger, J.M, Kim, P.S.
Deposit date:1997-04-20
Release date:1997-06-16
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (2 Å)
Cite:Core structure of gp41 from the HIV envelope glycoprotein.
Cell(Cambridge,Mass.), 89, 1997
1B79
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BU of 1b79 by Molmil
N-TERMINAL DOMAIN OF DNA REPLICATION PROTEIN DNAB
Descriptor: DnaB Helicase
Authors:Fass, D, Bogden, C.E, Berger, J.M.
Deposit date:1999-01-28
Release date:1999-06-30
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of the N-terminal domain of the DnaB hexameric helicase.
Structure Fold.Des., 7, 1999
1A8V
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BU of 1a8v by Molmil
STRUCTURE OF THE RNA-BINDING DOMAIN OF THE RHO TRANSCRIPTION TERMINATOR
Descriptor: COPPER (II) ION, TRANSCRIPTION TERMINATION FACTOR RHO
Authors:Fass, D, Bogden, C, Berger, J.M.
Deposit date:1998-03-28
Release date:1999-05-04
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:The structural basis for terminator recognition by the Rho transcription termination factor.
Mol.Cell, 3, 1999

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