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PDB: 148 件
1AOL
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BU of 1aol by Molmil
FRIEND MURINE LEUKEMIA VIRUS RECEPTOR-BINDING DOMAIN
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, GP70, ZINC ION
著者Fass, D, Davey, R.A, Hamson, C.A, Kim, P.S, Cunningham, J.M, Berger, J.M.
登録日1997-07-08
公開日1997-10-15
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure of a murine leukemia virus receptor-binding glycoprotein at 2.0 angstrom resolution.
Science, 277, 1997
6OK8
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BU of 6ok8 by Molmil
Crystal structure of Staphylococcal nuclease variant Delta+PHS K127L at cryogenic temperature
分子名称: CALCIUM ION, THYMIDINE-3',5'-DIPHOSPHATE, Thermonuclease
著者Jeliazkov, J.R, Robinson, A.C, Berger, J.M, Garcia-Moreno E, B, Gray, J.G.
登録日2019-04-12
公開日2019-05-08
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Toward the computational design of protein crystals with improved resolution.
Acta Crystallogr D Struct Biol, 75, 2019
5JJK
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BU of 5jjk by Molmil
Rho transcription termination factor bound to rA7 and 6 ADP-BeF3 molecules
分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, MAGNESIUM ION, ...
著者Thomsen, N.D, Lawson, M.R, Witkowsky, L.B, Qu, S, Berger, J.M.
登録日2016-04-24
公開日2016-11-16
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (3.15 Å)
主引用文献Molecular mechanisms of substrate-controlled ring dynamics and substepping in a nucleic acid-dependent hexameric motor.
Proc. Natl. Acad. Sci. U.S.A., 113, 2016
5JJI
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BU of 5jji by Molmil
Rho transcription termination factor bound to rU7 and 6 ADP-BeF3 molecules
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, ...
著者Thomsen, N.D, Lawson, M.R, Witkowsky, L.B, Qu, S, Berger, J.M.
登録日2016-04-24
公開日2016-11-16
最終更新日2019-12-25
実験手法X-RAY DIFFRACTION (2.601 Å)
主引用文献Molecular mechanisms of substrate-controlled ring dynamics and substepping in a nucleic acid-dependent hexameric motor.
Proc. Natl. Acad. Sci. U.S.A., 113, 2016
5JJL
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BU of 5jjl by Molmil
Rho transcription termination factor bound to rU8 and 5 ADP-BeF3 molecules
分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, MAGNESIUM ION, ...
著者Thomsen, N.D, Lawson, M.R, Witkowsky, L.B, Qu, S, Berger, J.M.
登録日2016-04-24
公開日2016-11-16
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Molecular mechanisms of substrate-controlled ring dynamics and substepping in a nucleic acid-dependent hexameric motor.
Proc. Natl. Acad. Sci. U.S.A., 113, 2016
2HCB
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BU of 2hcb by Molmil
Structure of AMPPCP-bound DnaA from Aquifex aeolicus
分子名称: Chromosomal replication initiator protein dnaA, MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
著者Erzberger, J.P, Mott, M.L, Berger, J.M.
登録日2006-06-15
公開日2006-07-25
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (3.51 Å)
主引用文献Structural basis for ATP-dependent DnaA assembly and replication-origin remodeling.
Nat.Struct.Mol.Biol., 13, 2006
2IDC
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BU of 2idc by Molmil
Structure of the Histone H3-Asf1 Chaperone Interaction
分子名称: ANTI-SILENCING PROTEIN 1 AND HISTONE H3 CHIMERA
著者Antczak, A.J, Tsubota, T, Kaufman, P.D, Berger, J.M.
登録日2006-09-14
公開日2007-01-30
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structure of the yeast histone H3-ASF1 interaction: implications for chaperone mechanism, species-specific interactions, and epigenetics.
Bmc Struct.Biol., 6, 2006
1L8Q
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BU of 1l8q by Molmil
CRYSTAL STRUCTURE OF DNA REPLICATION INITIATION FACTOR
分子名称: ADENOSINE-5'-DIPHOSPHATE, Chromosomal replication initiator protein dnaA, MAGNESIUM ION
著者Erzberger, J.P, Pirruccello, M.M, Berger, J.M.
登録日2002-03-21
公開日2002-09-25
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献The structure of bacterial DnaA: implications for general mechanisms underlying DNA replication initiation
Embo J., 21, 2002
4KM5
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BU of 4km5 by Molmil
X-ray crystal structure of human cyclic GMP-AMP synthase (cGAS)
分子名称: Cyclic GMP-AMP synthase, ZINC ION
著者Kranzusch, P.J, Lee, A.S.Y, Berger, J.M, Doudna, J.A.
登録日2013-05-08
公開日2013-05-29
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.499 Å)
主引用文献Structure of Human cGAS Reveals a Conserved Family of Second-Messenger Enzymes in Innate Immunity.
Cell Rep, 3, 2013
2G2W
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BU of 2g2w by Molmil
Crystal Structure of the SHV D104K Beta-lactamase/Beta-lactamase inhibitor protein (BLIP) complex
分子名称: Beta-lactamase SHV-1, Beta-lactamase inhibitory protein
著者Reynolds, K.A, Thomson, J.M, Corbett, K.D, Bethel, C.R, Berger, J.M, Kirsch, J.F, Bonomo, R.A, Handel, T.M.
登録日2006-02-16
公開日2006-07-04
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural and Computational Characterization of the SHV-1 beta-Lactamase-beta-Lactamase Inhibitor Protein Interface.
J.Biol.Chem., 281, 2006
2G2U
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BU of 2g2u by Molmil
Crystal Structure of the SHV-1 Beta-lactamase/Beta-lactamase inhibitor protein (BLIP) complex
分子名称: Beta-lactamase SHV-1, Beta-lactamase inhibitory protein
著者Reynolds, K.A, Thomson, J.M, Corbett, K.D, Bethel, C.R, Berger, J.M, Kirsch, J.F, Bonomo, R.A, Handel, T.M.
登録日2006-02-16
公開日2006-07-04
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structural and Computational Characterization of the SHV-1 beta-Lactamase-beta-Lactamase Inhibitor Protein Interface.
J.Biol.Chem., 281, 2006
3HVD
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BU of 3hvd by Molmil
The Protective Antigen Component of Anthrax Toxin Forms Functional Octameric Complexes
分子名称: CALCIUM ION, Protective antigen
著者Kintzer, A.F, Dong, K.C, Berger, J.M, Krantz, B.A.
登録日2009-06-15
公開日2009-08-25
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3.209 Å)
主引用文献The protective antigen component of anthrax toxin forms functional octameric complexes.
J.Mol.Biol., 392, 2009
2AU3
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BU of 2au3 by Molmil
Crystal Structure of the Aquifex aeolicus primase (Zinc Binding and RNA Polymerase Domains)
分子名称: DNA primase, ZINC ION
著者Corn, J.E, Pease, P.J, Hura, G.L, Berger, J.M.
登録日2005-08-26
公開日2005-11-15
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crosstalk between primase subunits can act to regulate primer synthesis in trans.
Mol.Cell, 20, 2005
2HT1
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BU of 2ht1 by Molmil
The closed ring structure of the Rho transcription termination factor in complex with nucleic acid in the motor domains
分子名称: 5'-R(*UP*C)-3', 5'-R(*UP*CP*UP*CP*U)-3', SULFATE ION, ...
著者Skordalakes, E, Berger, J.M.
登録日2006-07-24
公開日2006-11-14
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (3.51 Å)
主引用文献Structural Insights into RNA-Dependent Ring Closure and ATPase Activation by the Rho Termination Factor.
Cell(Cambridge,Mass.), 127, 2006
1MX0
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BU of 1mx0 by Molmil
Structure of topoisomerase subunit
分子名称: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, SODIUM ION, ...
著者Corbett, K.D, Berger, J.M.
登録日2002-10-01
公開日2003-01-07
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structure of the topoisomerase VI-B subunit: implications for type II topoisomerase mechanism and evolution
Embo J., 22, 2003
4GFH
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BU of 4gfh by Molmil
Topoisomerase II-DNA-AMPPNP complex
分子名称: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*CP*GP*TP*CP*AP*TP*CP*C)-3'), DNA (5'-D(*CP*GP*CP*GP*GP*TP*AP*GP*CP*AP*GP*TP*AP*GP*G)-3'), DNA (5'-D(P*CP*CP*TP*AP*CP*TP*GP*CP*TP*AP*C)-3'), ...
著者Schmidt, B.H, Osheroff, N, Berger, J.M.
登録日2012-08-03
公開日2012-10-03
最終更新日2019-07-31
実験手法X-RAY DIFFRACTION (4.408 Å)
主引用文献Structure of a topoisomerase II-DNA-nucleotide complex reveals a new control mechanism for ATPase activity.
Nat.Struct.Mol.Biol., 19, 2012
3IBP
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BU of 3ibp by Molmil
The Crystal Structure of the Dimerization Domain of Escherichia coli Structural Maintenance of Chromosomes Protein MukB
分子名称: AMMONIUM ION, Chromosome partition protein mukB
著者Li, Y, Schoeffler, A.J, Berger, J.M, Oakley, M.G.
登録日2009-07-16
公開日2010-01-26
最終更新日2017-11-01
実験手法X-RAY DIFFRACTION (3.099 Å)
主引用文献The crystal structure of the hinge domain of the Escherichia coli structural maintenance of chromosomes protein MukB.
J.Mol.Biol., 395, 2010
3UC1
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BU of 3uc1 by Molmil
Mycobacterium tuberculosis gyrase type IIA topoisomerase C-terminal domain
分子名称: ACETATE ION, CALCIUM ION, DNA gyrase subunit A, ...
著者Tretter, E.M, Berger, J.M.
登録日2011-10-25
公開日2012-03-28
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Mechanisms for Defining Supercoiling Set Point of DNA Gyrase Orthologs: II. THE SHAPE OF THE GyrA SUBUNIT C-TERMINAL DOMAIN (CTD) IS NOT A SOLE DETERMINANT FOR CONTROLLING SUPERCOILING EFFICIENCY.
J.Biol.Chem., 287, 2012
4E2K
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BU of 4e2k by Molmil
The structure of the S. aureus DnaG RNA Polymerase Domain
分子名称: BENZAMIDINE, DNA primase
著者Rymer, R.U, Solorio, F.A, Clement, C, Corn, J.E, Wang, J.D, Berger, J.M.
登録日2012-03-08
公開日2012-08-01
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Binding Mechanism of Metal-NTP Substrates and Stringent-Response Alarmones to Bacterial DnaG-Type Primases.
Structure, 20, 2012
4EDT
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BU of 4edt by Molmil
The structure of the S. aureus DnaG RNA Polymerase Domain bound to ppGpp and Manganese
分子名称: BENZAMIDINE, DNA primase, GUANOSINE-5',3'-TETRAPHOSPHATE, ...
著者Rymer, R.U, Solorio, F.A, Chu, C, Corn, J.E, Wang, J.D, Berger, J.M.
登録日2012-03-27
公開日2012-07-25
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.005 Å)
主引用文献Binding Mechanism of Metal-NTP Substrates and Stringent-Response Alarmones to Bacterial DnaG-Type Primases.
Structure, 20, 2012
4EDR
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BU of 4edr by Molmil
The structure of the S. aureus DnaG RNA Polymerase Domain bound to UTP and Manganese
分子名称: BENZAMIDINE, DNA primase, MANGANESE (II) ION, ...
著者Rymer, R.U, Solorio, F.A, Chu, C, Corn, J.E, Wang, J.D, Berger, J.M.
登録日2012-03-27
公開日2012-07-25
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.01 Å)
主引用文献Binding Mechanism of Metal-NTP Substrates and Stringent-Response Alarmones to Bacterial DnaG-Type Primases.
Structure, 20, 2012
4EDV
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BU of 4edv by Molmil
The structure of the S. aureus DnaG RNA Polymerase Domain bound to pppGpp and Manganese
分子名称: BENZAMIDINE, DNA primase, MANGANESE (II) ION, ...
著者Rymer, R.U, Solorio, F.A, Chu, C, Corn, J.E, Wang, J.D, Berger, J.M.
登録日2012-03-27
公開日2012-07-25
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.01 Å)
主引用文献Binding Mechanism of Metal-NTP Substrates and Stringent-Response Alarmones to Bacterial DnaG-Type Primases.
Structure, 20, 2012
4EDG
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The structure of the S. aureus DnaG RNA Polymerase Domain bound to ATP and Manganese
分子名称: ADENOSINE-5'-TRIPHOSPHATE, BENZAMIDINE, DNA primase, ...
著者Rymer, R.U, Solorio, F.A, Chu, C, Corn, J.E, Wang, J.D, Berger, J.M.
登録日2012-03-27
公開日2012-07-25
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.003 Å)
主引用文献Binding Mechanism of Metal-NTP Substrates and Stringent-Response Alarmones to Bacterial DnaG-Type Primases.
Structure, 20, 2012
4EE1
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BU of 4ee1 by Molmil
The structure of the S. aureus DnaG RNA Polymerase Domain bound to CTP and Manganese
分子名称: BENZAMIDINE, CYTIDINE-5'-TRIPHOSPHATE, DNA primase, ...
著者Rymer, R.U, Solorio, F.A, Chu, C, Corn, J.E, Wang, J.D, Berger, J.M.
登録日2012-03-28
公開日2012-07-25
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.02 Å)
主引用文献Binding Mechanism of Metal-NTP Substrates and Stringent-Response Alarmones to Bacterial DnaG-Type Primases.
Structure, 20, 2012
4EDK
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The structure of the S. aureus DnaG RNA Polymerase Domain bound to GTP and Manganese
分子名称: BENZAMIDINE, DNA primase, GUANOSINE-5'-TRIPHOSPHATE, ...
著者Rymer, R.U, Solorio, F.A, Chu, C, Corn, J.E, Wang, J.D, Berger, J.M.
登録日2012-03-27
公開日2012-07-25
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Binding Mechanism of Metal-NTP Substrates and Stringent-Response Alarmones to Bacterial DnaG-Type Primases.
Structure, 20, 2012

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