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PDB: 251 results

1J7G
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Structure of YihZ from Haemophilus influenzae (HI0670), a D-Tyr-tRNA(Tyr) deacylase
Descriptor: D-tyrosyl-tRNA(Tyr) deacylase
Authors:Lim, K, Herzberg, O, Structure 2 Function Project (S2F)
Deposit date:2001-05-16
Release date:2003-04-22
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:A Catalytic Mechanism for D-Tyr-tRNATyr Deacylase Based on the Crystal Structure of Hemophilus influenzae HI0670
J.Biol.Chem., 278, 2003
1EGR
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SEQUENCE-SPECIFIC 1H N.M.R. ASSIGNMENTS AND DETERMINATION OF THE THREE-DIMENSIONAL STRUCTURE OF REDUCED ESCHERICHIA COLI GLUTAREDOXIN
Descriptor: GLUTAREDOXIN
Authors:Sodano, P, Xia, T.-H, Bushweller, J.H, Bjornberg, O, Holmgren, A, Billeter, M, Wuthrich, K.
Deposit date:1991-10-08
Release date:1993-10-31
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Sequence-specific 1H n.m.r. assignments and determination of the three-dimensional structure of reduced Escherichia coli glutaredoxin.
J.Mol.Biol., 221, 1991
2OUT
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BU of 2out by Molmil
Solution Structure of HI1506, a Novel Two Domain Protein from Haemophilus influenzae
Descriptor: Mu-like prophage FluMu protein gp35, Protein HI1507 in Mu-like prophage FluMu region
Authors:Sari, N, He, Y, Doseeva, V, Surabian, K, Schwarz, F, Herzberg, O, Orban, J, Structure 2 Function Project (S2F)
Deposit date:2007-02-12
Release date:2007-05-01
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of HI1506, a novel two-domain protein from Haemophilus influenzae.
Protein Sci., 16, 2007
1PCH
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BU of 1pch by Molmil
STRUCTURAL EVIDENCE FOR THE EVOLUTIONARY DIVERGENCE OF MYCOPLASMA FROM GRAM-POSITIVE BACTERIA: THE HISTIDINE-CONTAINING PHOSPHOCARRIER PROTEIN
Descriptor: PHOSPHOCARRIER PROTEIN, SULFATE ION
Authors:Pieper, U, Herzberg, O.
Deposit date:1995-07-11
Release date:1995-10-15
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural evidence for the evolutionary divergence of mycoplasma from gram-positive bacteria: the histidine-containing phosphocarrier protein.
Structure, 3, 1995
1LBU
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HYDROLASE METALLO (ZN) DD-PEPTIDASE
Descriptor: MURAMOYL-PENTAPEPTIDE CARBOXYPEPTIDASE, ZINC ION
Authors:Charlier, P, Wery, J.-P, Dideberg, O, Frere, J.-M.
Deposit date:1996-03-16
Release date:1996-11-08
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Streptomyces Albus G D-Ala-A-Ala Carboxypeptidase
Handbook of Metalloproteins, 3, 2004
2BMI
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METALLO-BETA-LACTAMASE
Descriptor: PROTEIN (CLASS B BETA-LACTAMASE), SODIUM ION, ZINC ION
Authors:Carfi, A, Duee, E, Dideberg, O.
Deposit date:1998-09-17
Release date:1998-09-23
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:X-ray structure of the ZnII beta-lactamase from Bacteroides fragilis in an orthorhombic crystal form.
Acta Crystallogr.,Sect.D, 54, 1998
3CA8
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BU of 3ca8 by Molmil
Crystal structure of Escherichia coli YdcF, an S-adenosyl-L-methionine utilizing enzyme
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Protein ydcF, SULFATE ION
Authors:Lim, K, Chao, K, Lehmann, C, Herzberg, O, Structure 2 Function Project (S2F)
Deposit date:2008-02-19
Release date:2008-05-06
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The Escherichia coli YdcF binds S-adenosyl-L-methionine and adopts an alpha/beta-fold characteristic of nucleotide-utilizing enzymes.
Proteins, 72, 2008
1QME
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PENICILLIN-BINDING PROTEIN 2X (PBP-2X)
Descriptor: PENICILLIN-BINDING PROTEIN 2X, SULFATE ION
Authors:Gordon, E.J, Mouz, N, Duee, E, Dideberg, O.
Deposit date:1999-09-28
Release date:2000-05-25
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The Crystal Structure of the Penicillin-Binding Protein 2X from Streptococcus Pneumoniae and its Acyl-Enzyme Form: Implication in Drug Resistance.
J.Mol.Biol., 299, 2000
1DXK
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Metallo-beta-lactamase from Bacillus cereus 569/H/9 C168S mutant
Descriptor: BICARBONATE ION, CLASS B BETA-LACTAMASE, ZINC ION
Authors:Chantalat, L, Duee, E, Dideberg, O.
Deposit date:2000-01-10
Release date:2000-08-25
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural effects of the active site mutation cysteine to serine in Bacillus cereus zinc-beta-lactamase.
Protein Sci., 9, 2000
3US1
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Structure of p63 DNA Binding Domain in Complex with a 22 Base Pair Response Element Containing a Two Base Pair "GC" Spacer Between Half Sites
Descriptor: 5'-D(*AP*AP*AP*CP*AP*TP*GP*TP*TP*TP*GP*CP*AP*AP*AP*CP*AP*TP*GP*TP*TP*T)-3', Tumor protein 63, ZINC ION
Authors:Chen, C, Herzberg, O.
Deposit date:2011-11-22
Release date:2012-02-01
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Pliable DNA Conformation of Response Elements Bound to Transcription Factor p63.
J.Biol.Chem., 287, 2012
3B8I
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Crystal Structure of Oxaloacetate Decarboxylase from Pseudomonas Aeruginosa (PA4872) in complex with oxalate and Mg2+.
Descriptor: GLYCEROL, MAGNESIUM ION, OXALATE ION, ...
Authors:Narayanan, B.C, Herzberg, O.
Deposit date:2007-11-01
Release date:2008-01-01
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure and function of PA4872 from Pseudomonas aeruginosa, a novel class of oxaloacetate decarboxylase from the PEP mutase/isocitrate lyase superfamily.
Biochemistry, 47, 2008
2XD1
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ACTIVE SITE RESTRUCTURING REGULATES LIGAND RECOGNITION IN CLASS A PENICILLIN-BINDING PROTEINS
Descriptor: CEFOTAXIME, C3' cleaved, open, ...
Authors:Macheboeuf, P, Di Guilmi, A.M, Job, V, Vernet, T, Dideberg, O, Dessen, A.
Deposit date:2010-04-28
Release date:2010-05-26
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3 Å)
Cite:Active Site Restructuring Regulates Ligand Recognition in Class a Penicillin-Binding Proteins.
Proc.Natl.Acad.Sci.USA, 102, 2005
1EEH
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UDP-N-ACETYLMURAMOYL-L-ALANINE:D-GLUTAMATE LIGASE
Descriptor: UDP-N-ACETYLMURAMOYL-L-ALANINE:D-GLUTAMATE LIGASE, URIDINE-5'-DIPHOSPHATE-N-ACETYLMURAMOYL-L-ALANINE
Authors:Bertrand, J.A, Fanchon, E, Martin, L, Chantalat, L, Auger, G, Blanot, D, van Heijenoort, J, Dideberg, O.
Deposit date:2000-01-31
Release date:2001-01-17
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:"Open" structures of MurD: domain movements and structural similarities with folylpolyglutamate synthetase.
J.Mol.Biol., 301, 2000
1QMF
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PENICILLIN-BINDING PROTEIN 2X (PBP-2X) ACYL-ENZYME COMPLEX
Descriptor: 2-[CARBOXY-(2-FURAN-2-YL-2-METHOXYIMINO-ACETYLAMINO)-METHYL]-5-METHYL-3,6-DIHYDRO-2H-[1,3]THIAZINE-4-CARBOXYLIC ACID, CEFUROXIME (OCT-3-ENE FORM), PENICILLIN-BINDING PROTEIN 2X
Authors:Gordon, E.J, Mouz, N, Duee, E, Dideberg, O.
Deposit date:1999-09-28
Release date:2000-05-25
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The Crystal Structure of the Penicillin Binding Protein 2X from Streptococcus Pneumoniae and its Acyl-Enzyme Form: Implication in Drug Resistance
J.Mol.Biol., 299, 2000
3ZOF
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Crystal structure of FMN-binding protein (YP_005476) from Thermus thermophilus with bound benzene-1,4-diol
Descriptor: FLAVIN MONONUCLEOTIDE, FLAVOREDOXIN, benzene-1,4-diol
Authors:Pavkov-Keller, T, Steinkellner, G, Gruber, C.C, Steiner, K, Winkler, C, Schwamberger, O, Schwab, H, Faber, K, Gruber, K.
Deposit date:2013-02-21
Release date:2014-05-14
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Identification of Promiscuous Ene-Reductase Activity by Mining Structural Databases Using Active Site Constellations.
Nat.Commun., 5, 2014
1PIO
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BU of 1pio by Molmil
AN ENGINEERED STAPHYLOCOCCUS AUREUS PC1 BETA-LACTAMASE THAT HYDROLYSES THIRD GENERATION CEPHALOSPORINS
Descriptor: BETA-LACTAMASE
Authors:Zawadzke, L.E, Herzberg, O.
Deposit date:1995-10-11
Release date:1996-03-08
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:An engineered Staphylococcus aureus PC1 beta-lactamase that hydrolyses third-generation cephalosporins.
Protein Eng., 8, 1995
3ZOE
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Crystal structure of FMN-binding protein (YP_005476) from Thermus thermophilus with bound p-hydroxybenzaldehyde
Descriptor: FLAVIN MONONUCLEOTIDE, FLAVOREDOXIN, P-HYDROXYBENZALDEHYDE
Authors:Pavkov-Keller, T, Steinkellner, G, Gruber, C.C, Steiner, K, Winkler, C, Schwamberger, O, Schwab, H, Faber, K, Gruber, K.
Deposit date:2013-02-21
Release date:2014-05-14
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Identification of Promiscuous Ene-Reductase Activity by Mining Structural Databases Using Active Site Constellations.
Nat.Commun., 5, 2014
3FA4
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Crystal structure of 2,3-dimethylmalate lyase, a PEP mutase/isocitrate lyase superfamily member, triclinic crystal form
Descriptor: 2,3-dimethylmalate lyase, MAGNESIUM ION
Authors:Narayanan, B.C, Herzberg, O.
Deposit date:2008-11-14
Release date:2009-01-27
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Structure and function of 2,3-dimethylmalate lyase, a PEP mutase/isocitrate lyase superfamily member.
J.Mol.Biol., 386, 2009
1M1B
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Crystal Structure of Phosphoenolpyruvate Mutase Complexed with Sulfopyruvate
Descriptor: MAGNESIUM ION, PHOSPHOENOLPYRUVATE PHOSPHOMUTASE, SULFOPYRUVATE
Authors:Liu, S, Lu, Z, Jia, Y, Dunaway-Mariano, D, Herzberg, O.
Deposit date:2002-06-18
Release date:2002-08-28
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Dissociative phosphoryl transfer in PEP mutase catalysis: structure of the enzyme/sulfopyruvate complex and kinetic properties of mutants.
Biochemistry, 41, 2002
3ZOD
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Crystal structure of FMN-binding protein (NP_142786.1) from Pyrococcus horikoshii with bound benzene-1,4-diol
Descriptor: FLAVIN MONONUCLEOTIDE, FMN-BINDING PROTEIN, benzene-1,4-diol
Authors:Pavkov-Keller, T, Steinkellner, G, Gruber, C.C, Steiner, K, Winkler, C, Schwamberger, O, Schwab, H, Faber, K, Gruber, K.
Deposit date:2013-02-21
Release date:2014-05-14
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Identification of Promiscuous Ene-Reductase Activity by Mining Structural Databases Using Active Site Constellations.
Nat.Commun., 5, 2014
1SPH
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BU of 1sph by Molmil
REFINED STRUCTURES OF THE ACTIVE S83C AND IMPAIRED S46D HPRS: EVIDENCE THAT PHOSPHORYLATION DOES NOT REQUIRE A BACKBONE CONFORMATIONAL TRANSITION
Descriptor: HISTIDINE-CONTAINING PHOSPHOCARRIER PROTEIN HPR
Authors:Liao, D.-I, Herzberg, O.
Deposit date:1994-11-03
Release date:1995-02-07
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Refined structures of the active Ser83-->Cys and impaired Ser46-->Asp histidine-containing phosphocarrier proteins.
Structure, 2, 1994
3ZOC
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Crystal structure of FMN-binding protein (NP_142786.1) from Pyrococcus horikoshii with bound p-hydroxybenzaldehyde
Descriptor: FLAVIN MONONUCLEOTIDE, FMN-BINDING PROTEIN, P-HYDROXYBENZALDEHYDE
Authors:Pavkov-Keller, T, Steinkellner, G, Gruber, C.C, Steiner, K, Winkler, C, Schwamberger, O, Schwab, H, Faber, K, Gruber, K.
Deposit date:2013-02-21
Release date:2014-05-14
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Identification of Promiscuous Ene-Reductase Activity by Mining Structural Databases Using Active Site Constellations.
Nat.Commun., 5, 2014
2DIK
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BU of 2dik by Molmil
R337A MUTANT OF PYRUVATE PHOSPHATE DIKINASE
Descriptor: PROTEIN (PYRUVATE PHOSPHATE DIKINASE), SULFATE ION
Authors:Huang, K, Herzberg, O.
Deposit date:1998-09-03
Release date:1999-09-13
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Location of the phosphate binding site within Clostridium symbiosum pyruvate phosphate dikinase.
Biochemistry, 37, 1998
4OJ6
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Crystal Structure of a Putative Tailspike Protein (TSP1, orf210) from Escherichia coli O157:H7 Bacteriohage CBA120; Se-Met Protein
Descriptor: Tailspike protein, ZINC ION
Authors:Chen, C, Herzberg, O.
Deposit date:2014-01-20
Release date:2014-03-26
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of ORF210 from E. coli O157:H1 phage CBA120 (TSP1), a putative tailspike protein.
Plos One, 9, 2014
1M85
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Structure of Proteus mirabilis catalase for the native form
Descriptor: GLYCEROL, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION, ...
Authors:Gouet, P, Jouve, H.-M, Dideberg, O.
Deposit date:2002-07-24
Release date:2002-08-14
Last modified:2014-04-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of Proteus mirabilis PR catalase with and without bound NADPH.
J.Mol.Biol., 249, 1995

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