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PDB: 251 件
1J7G
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Structure of YihZ from Haemophilus influenzae (HI0670), a D-Tyr-tRNA(Tyr) deacylase
分子名称: D-tyrosyl-tRNA(Tyr) deacylase
著者Lim, K, Herzberg, O, Structure 2 Function Project (S2F)
登録日2001-05-16
公開日2003-04-22
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.64 Å)
主引用文献A Catalytic Mechanism for D-Tyr-tRNATyr Deacylase Based on the Crystal Structure of Hemophilus influenzae HI0670
J.Biol.Chem., 278, 2003
1EGR
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SEQUENCE-SPECIFIC 1H N.M.R. ASSIGNMENTS AND DETERMINATION OF THE THREE-DIMENSIONAL STRUCTURE OF REDUCED ESCHERICHIA COLI GLUTAREDOXIN
分子名称: GLUTAREDOXIN
著者Sodano, P, Xia, T.-H, Bushweller, J.H, Bjornberg, O, Holmgren, A, Billeter, M, Wuthrich, K.
登録日1991-10-08
公開日1993-10-31
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Sequence-specific 1H n.m.r. assignments and determination of the three-dimensional structure of reduced Escherichia coli glutaredoxin.
J.Mol.Biol., 221, 1991
2OUT
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Solution Structure of HI1506, a Novel Two Domain Protein from Haemophilus influenzae
分子名称: Mu-like prophage FluMu protein gp35, Protein HI1507 in Mu-like prophage FluMu region
著者Sari, N, He, Y, Doseeva, V, Surabian, K, Schwarz, F, Herzberg, O, Orban, J, Structure 2 Function Project (S2F)
登録日2007-02-12
公開日2007-05-01
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Solution structure of HI1506, a novel two-domain protein from Haemophilus influenzae.
Protein Sci., 16, 2007
1PCH
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BU of 1pch by Molmil
STRUCTURAL EVIDENCE FOR THE EVOLUTIONARY DIVERGENCE OF MYCOPLASMA FROM GRAM-POSITIVE BACTERIA: THE HISTIDINE-CONTAINING PHOSPHOCARRIER PROTEIN
分子名称: PHOSPHOCARRIER PROTEIN, SULFATE ION
著者Pieper, U, Herzberg, O.
登録日1995-07-11
公開日1995-10-15
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural evidence for the evolutionary divergence of mycoplasma from gram-positive bacteria: the histidine-containing phosphocarrier protein.
Structure, 3, 1995
1LBU
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BU of 1lbu by Molmil
HYDROLASE METALLO (ZN) DD-PEPTIDASE
分子名称: MURAMOYL-PENTAPEPTIDE CARBOXYPEPTIDASE, ZINC ION
著者Charlier, P, Wery, J.-P, Dideberg, O, Frere, J.-M.
登録日1996-03-16
公開日1996-11-08
最終更新日2024-06-05
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Streptomyces Albus G D-Ala-A-Ala Carboxypeptidase
Handbook of Metalloproteins, 3, 2004
2BMI
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METALLO-BETA-LACTAMASE
分子名称: PROTEIN (CLASS B BETA-LACTAMASE), SODIUM ION, ZINC ION
著者Carfi, A, Duee, E, Dideberg, O.
登録日1998-09-17
公開日1998-09-23
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献X-ray structure of the ZnII beta-lactamase from Bacteroides fragilis in an orthorhombic crystal form.
Acta Crystallogr.,Sect.D, 54, 1998
3CA8
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BU of 3ca8 by Molmil
Crystal structure of Escherichia coli YdcF, an S-adenosyl-L-methionine utilizing enzyme
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, Protein ydcF, SULFATE ION
著者Lim, K, Chao, K, Lehmann, C, Herzberg, O, Structure 2 Function Project (S2F)
登録日2008-02-19
公開日2008-05-06
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献The Escherichia coli YdcF binds S-adenosyl-L-methionine and adopts an alpha/beta-fold characteristic of nucleotide-utilizing enzymes.
Proteins, 72, 2008
1QME
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PENICILLIN-BINDING PROTEIN 2X (PBP-2X)
分子名称: PENICILLIN-BINDING PROTEIN 2X, SULFATE ION
著者Gordon, E.J, Mouz, N, Duee, E, Dideberg, O.
登録日1999-09-28
公開日2000-05-25
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献The Crystal Structure of the Penicillin-Binding Protein 2X from Streptococcus Pneumoniae and its Acyl-Enzyme Form: Implication in Drug Resistance.
J.Mol.Biol., 299, 2000
1DXK
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Metallo-beta-lactamase from Bacillus cereus 569/H/9 C168S mutant
分子名称: BICARBONATE ION, CLASS B BETA-LACTAMASE, ZINC ION
著者Chantalat, L, Duee, E, Dideberg, O.
登録日2000-01-10
公開日2000-08-25
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Structural effects of the active site mutation cysteine to serine in Bacillus cereus zinc-beta-lactamase.
Protein Sci., 9, 2000
3US1
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Structure of p63 DNA Binding Domain in Complex with a 22 Base Pair Response Element Containing a Two Base Pair "GC" Spacer Between Half Sites
分子名称: 5'-D(*AP*AP*AP*CP*AP*TP*GP*TP*TP*TP*GP*CP*AP*AP*AP*CP*AP*TP*GP*TP*TP*T)-3', Tumor protein 63, ZINC ION
著者Chen, C, Herzberg, O.
登録日2011-11-22
公開日2012-02-01
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Pliable DNA Conformation of Response Elements Bound to Transcription Factor p63.
J.Biol.Chem., 287, 2012
3B8I
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Crystal Structure of Oxaloacetate Decarboxylase from Pseudomonas Aeruginosa (PA4872) in complex with oxalate and Mg2+.
分子名称: GLYCEROL, MAGNESIUM ION, OXALATE ION, ...
著者Narayanan, B.C, Herzberg, O.
登録日2007-11-01
公開日2008-01-01
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structure and function of PA4872 from Pseudomonas aeruginosa, a novel class of oxaloacetate decarboxylase from the PEP mutase/isocitrate lyase superfamily.
Biochemistry, 47, 2008
2XD1
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ACTIVE SITE RESTRUCTURING REGULATES LIGAND RECOGNITION IN CLASS A PENICILLIN-BINDING PROTEINS
分子名称: CEFOTAXIME, C3' cleaved, open, ...
著者Macheboeuf, P, Di Guilmi, A.M, Job, V, Vernet, T, Dideberg, O, Dessen, A.
登録日2010-04-28
公開日2010-05-26
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Active Site Restructuring Regulates Ligand Recognition in Class a Penicillin-Binding Proteins.
Proc.Natl.Acad.Sci.USA, 102, 2005
1EEH
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UDP-N-ACETYLMURAMOYL-L-ALANINE:D-GLUTAMATE LIGASE
分子名称: UDP-N-ACETYLMURAMOYL-L-ALANINE:D-GLUTAMATE LIGASE, URIDINE-5'-DIPHOSPHATE-N-ACETYLMURAMOYL-L-ALANINE
著者Bertrand, J.A, Fanchon, E, Martin, L, Chantalat, L, Auger, G, Blanot, D, van Heijenoort, J, Dideberg, O.
登録日2000-01-31
公開日2001-01-17
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献"Open" structures of MurD: domain movements and structural similarities with folylpolyglutamate synthetase.
J.Mol.Biol., 301, 2000
1QMF
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PENICILLIN-BINDING PROTEIN 2X (PBP-2X) ACYL-ENZYME COMPLEX
分子名称: 2-[CARBOXY-(2-FURAN-2-YL-2-METHOXYIMINO-ACETYLAMINO)-METHYL]-5-METHYL-3,6-DIHYDRO-2H-[1,3]THIAZINE-4-CARBOXYLIC ACID, CEFUROXIME (OCT-3-ENE FORM), PENICILLIN-BINDING PROTEIN 2X
著者Gordon, E.J, Mouz, N, Duee, E, Dideberg, O.
登録日1999-09-28
公開日2000-05-25
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献The Crystal Structure of the Penicillin Binding Protein 2X from Streptococcus Pneumoniae and its Acyl-Enzyme Form: Implication in Drug Resistance
J.Mol.Biol., 299, 2000
3ZOF
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BU of 3zof by Molmil
Crystal structure of FMN-binding protein (YP_005476) from Thermus thermophilus with bound benzene-1,4-diol
分子名称: FLAVIN MONONUCLEOTIDE, FLAVOREDOXIN, benzene-1,4-diol
著者Pavkov-Keller, T, Steinkellner, G, Gruber, C.C, Steiner, K, Winkler, C, Schwamberger, O, Schwab, H, Faber, K, Gruber, K.
登録日2013-02-21
公開日2014-05-14
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Identification of Promiscuous Ene-Reductase Activity by Mining Structural Databases Using Active Site Constellations.
Nat.Commun., 5, 2014
1PIO
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BU of 1pio by Molmil
AN ENGINEERED STAPHYLOCOCCUS AUREUS PC1 BETA-LACTAMASE THAT HYDROLYSES THIRD GENERATION CEPHALOSPORINS
分子名称: BETA-LACTAMASE
著者Zawadzke, L.E, Herzberg, O.
登録日1995-10-11
公開日1996-03-08
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献An engineered Staphylococcus aureus PC1 beta-lactamase that hydrolyses third-generation cephalosporins.
Protein Eng., 8, 1995
3ZOE
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Crystal structure of FMN-binding protein (YP_005476) from Thermus thermophilus with bound p-hydroxybenzaldehyde
分子名称: FLAVIN MONONUCLEOTIDE, FLAVOREDOXIN, P-HYDROXYBENZALDEHYDE
著者Pavkov-Keller, T, Steinkellner, G, Gruber, C.C, Steiner, K, Winkler, C, Schwamberger, O, Schwab, H, Faber, K, Gruber, K.
登録日2013-02-21
公開日2014-05-14
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Identification of Promiscuous Ene-Reductase Activity by Mining Structural Databases Using Active Site Constellations.
Nat.Commun., 5, 2014
3FA4
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Crystal structure of 2,3-dimethylmalate lyase, a PEP mutase/isocitrate lyase superfamily member, triclinic crystal form
分子名称: 2,3-dimethylmalate lyase, MAGNESIUM ION
著者Narayanan, B.C, Herzberg, O.
登録日2008-11-14
公開日2009-01-27
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.18 Å)
主引用文献Structure and function of 2,3-dimethylmalate lyase, a PEP mutase/isocitrate lyase superfamily member.
J.Mol.Biol., 386, 2009
1M1B
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Crystal Structure of Phosphoenolpyruvate Mutase Complexed with Sulfopyruvate
分子名称: MAGNESIUM ION, PHOSPHOENOLPYRUVATE PHOSPHOMUTASE, SULFOPYRUVATE
著者Liu, S, Lu, Z, Jia, Y, Dunaway-Mariano, D, Herzberg, O.
登録日2002-06-18
公開日2002-08-28
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Dissociative phosphoryl transfer in PEP mutase catalysis: structure of the enzyme/sulfopyruvate complex and kinetic properties of mutants.
Biochemistry, 41, 2002
3ZOD
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Crystal structure of FMN-binding protein (NP_142786.1) from Pyrococcus horikoshii with bound benzene-1,4-diol
分子名称: FLAVIN MONONUCLEOTIDE, FMN-BINDING PROTEIN, benzene-1,4-diol
著者Pavkov-Keller, T, Steinkellner, G, Gruber, C.C, Steiner, K, Winkler, C, Schwamberger, O, Schwab, H, Faber, K, Gruber, K.
登録日2013-02-21
公開日2014-05-14
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.68 Å)
主引用文献Identification of Promiscuous Ene-Reductase Activity by Mining Structural Databases Using Active Site Constellations.
Nat.Commun., 5, 2014
1SPH
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REFINED STRUCTURES OF THE ACTIVE S83C AND IMPAIRED S46D HPRS: EVIDENCE THAT PHOSPHORYLATION DOES NOT REQUIRE A BACKBONE CONFORMATIONAL TRANSITION
分子名称: HISTIDINE-CONTAINING PHOSPHOCARRIER PROTEIN HPR
著者Liao, D.-I, Herzberg, O.
登録日1994-11-03
公開日1995-02-07
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Refined structures of the active Ser83-->Cys and impaired Ser46-->Asp histidine-containing phosphocarrier proteins.
Structure, 2, 1994
3ZOC
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BU of 3zoc by Molmil
Crystal structure of FMN-binding protein (NP_142786.1) from Pyrococcus horikoshii with bound p-hydroxybenzaldehyde
分子名称: FLAVIN MONONUCLEOTIDE, FMN-BINDING PROTEIN, P-HYDROXYBENZALDEHYDE
著者Pavkov-Keller, T, Steinkellner, G, Gruber, C.C, Steiner, K, Winkler, C, Schwamberger, O, Schwab, H, Faber, K, Gruber, K.
登録日2013-02-21
公開日2014-05-14
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Identification of Promiscuous Ene-Reductase Activity by Mining Structural Databases Using Active Site Constellations.
Nat.Commun., 5, 2014
2DIK
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R337A MUTANT OF PYRUVATE PHOSPHATE DIKINASE
分子名称: PROTEIN (PYRUVATE PHOSPHATE DIKINASE), SULFATE ION
著者Huang, K, Herzberg, O.
登録日1998-09-03
公開日1999-09-13
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Location of the phosphate binding site within Clostridium symbiosum pyruvate phosphate dikinase.
Biochemistry, 37, 1998
4OJ6
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Crystal Structure of a Putative Tailspike Protein (TSP1, orf210) from Escherichia coli O157:H7 Bacteriohage CBA120; Se-Met Protein
分子名称: Tailspike protein, ZINC ION
著者Chen, C, Herzberg, O.
登録日2014-01-20
公開日2014-03-26
最終更新日2017-11-22
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of ORF210 from E. coli O157:H1 phage CBA120 (TSP1), a putative tailspike protein.
Plos One, 9, 2014
1M85
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Structure of Proteus mirabilis catalase for the native form
分子名称: GLYCEROL, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION, ...
著者Gouet, P, Jouve, H.-M, Dideberg, O.
登録日2002-07-24
公開日2002-08-14
最終更新日2014-04-16
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of Proteus mirabilis PR catalase with and without bound NADPH.
J.Mol.Biol., 249, 1995

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