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PDB: 171 件

5JJL
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Rho transcription termination factor bound to rU8 and 5 ADP-BeF3 molecules
分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, MAGNESIUM ION, ...
著者Thomsen, N.D, Lawson, M.R, Witkowsky, L.B, Qu, S, Berger, J.M.
登録日2016-04-24
公開日2016-11-16
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Molecular mechanisms of substrate-controlled ring dynamics and substepping in a nucleic acid-dependent hexameric motor.
Proc. Natl. Acad. Sci. U.S.A., 113, 2016
3EC2
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Crystal structure of the DnaC helicase loader
分子名称: ADENOSINE-5'-DIPHOSPHATE, DNA replication protein DnaC, MAGNESIUM ION
著者Mott, M.L, Erzberger, J.P, Coons, M.M, Berger, J.M.
登録日2008-08-28
公開日2008-11-25
最終更新日2017-10-25
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structural synergy and molecular crosstalk between bacterial helicase loaders and replication initiators.
Cell(Cambridge,Mass.), 135, 2008
2AU3
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Crystal Structure of the Aquifex aeolicus primase (Zinc Binding and RNA Polymerase Domains)
分子名称: DNA primase, ZINC ION
著者Corn, J.E, Pease, P.J, Hura, G.L, Berger, J.M.
登録日2005-08-26
公開日2005-11-15
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crosstalk between primase subunits can act to regulate primer synthesis in trans.
Mol.Cell, 20, 2005
3GFP
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BU of 3gfp by Molmil
Structure of the C-terminal domain of the DEAD-box protein Dbp5
分子名称: DEAD box protein 5
著者Erzberger, J.P, Dossani, Z.Y, Weirich, C.S, Weis, K, Berger, J.M.
登録日2009-02-27
公開日2009-09-01
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structure of the C-terminus of the mRNA export factor Dbp5 reveals the interaction surface for the ATPase activator Gle1
Proc.Natl.Acad.Sci.USA, 106, 2009
2RGR
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Topoisomerase IIA bound to G-segment DNA
分子名称: DNA, DNA topoisomerase 2, MAGNESIUM ION
著者Dong, K.C, Berger, J.M.
登録日2007-10-04
公開日2007-12-25
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structural basis for gate-DNA recognition and bending by type IIA topoisomerases.
Nature, 450, 2007
3ICE
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Rho transcription termination factor bound to RNA and ADP-BeF3
分子名称: 5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3', ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, ...
著者Thomsen, N.D, Berger, J.M.
登録日2009-07-17
公開日2009-11-10
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Running in reverse: the structural basis for translocation polarity in hexameric helicases.
Cell(Cambridge,Mass.), 139, 2009
1XPR
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Structural mechanism of inhibition of the Rho transcription termination factor by the antibiotic 5a-formylbicyclomycin (FB)
分子名称: 5'-R(*CP*UP*CP*UP*CP*UP*CP*U)-3', 5A-FORMYLBICYCLOMYCIN, MAGNESIUM ION, ...
著者Skordalakes, E, Brogan, A.P, Park, B.S, Kohn, H, Berger, J.M.
登録日2004-10-09
公開日2004-11-02
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (3.15 Å)
主引用文献Structural mechanism of inhibition of the rho transcription termination factor by the antibiotic bicyclomycin
Structure, 13, 2005
3IBP
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The Crystal Structure of the Dimerization Domain of Escherichia coli Structural Maintenance of Chromosomes Protein MukB
分子名称: AMMONIUM ION, Chromosome partition protein mukB
著者Li, Y, Schoeffler, A.J, Berger, J.M, Oakley, M.G.
登録日2009-07-16
公開日2010-01-26
最終更新日2017-11-01
実験手法X-RAY DIFFRACTION (3.099 Å)
主引用文献The crystal structure of the hinge domain of the Escherichia coli structural maintenance of chromosomes protein MukB.
J.Mol.Biol., 395, 2010
3K60
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Crystal structure of N-terminal domain of Plasmodium falciparum Hsp90 (PF07_0029) bound to ADP
分子名称: ADENOSINE-5'-DIPHOSPHATE, Heat shock protein 86, SULFATE ION
著者Corbett, K.D, Berger, J.M.
登録日2009-10-08
公開日2010-08-18
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structure of the ATP-binding domain of Plasmodium falciparum Hsp90.
Proteins, 78, 2010
1Z5C
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Topoisomerase VI-B, ADP Pi bound dimer form
分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, PHOSPHATE ION, ...
著者Corbett, K.D, Berger, J.M.
登録日2005-03-17
公開日2005-06-14
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural dissection of ATP turnover in the prototypical GHL ATPase TopoVI.
Structure, 13, 2005
1XPO
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Structural mechanism of inhibition of the Rho transcription termination factor by the antibiotic bicyclomycin
分子名称: 5'-R(*CP*UP*CP*UP*CP*UP*CP*U)-3', BICYCLOMYCIN, MAGNESIUM ION, ...
著者Skordalakes, E, Brogan, A.P, Park, B.S, Kohn, H, Berger, J.M.
登録日2004-10-09
公開日2005-02-08
最終更新日2018-01-31
実験手法X-RAY DIFFRACTION (3.15 Å)
主引用文献Structural mechanism of inhibition of the rho transcription termination factor by the antibiotic bicyclomycin
Structure, 13, 2005
1Z59
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Topoisomerase VI-B, ADP-bound monomer form
分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Type II DNA topoisomerase VI subunit B
著者Corbett, K.D, Berger, J.M.
登録日2005-03-17
公開日2005-06-14
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural dissection of ATP turnover in the prototypical GHL ATPase TopoVI.
Structure, 13, 2005
1L6Z
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CRYSTAL STRUCTURE OF MURINE CEACAM1A[1,4]: A CORONAVIRUS RECEPTOR AND CELL ADHESION MOLECULE IN THE CEA FAMILY
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, biliary glycoprotein C
著者Tan, K, Zelus, B.D, Meijers, R, Liu, J.-H, Bergelson, J.M, Duke, N, Zhang, R, Joachimiak, A, Holmes, K.V, Wang, J.-H.
登録日2002-03-14
公開日2002-09-14
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (3.32 Å)
主引用文献CRYSTAL STRUCTURE OF MURINE sCEACAM1a[1,4]: A CORONAVIRUS RECEPTOR IN THE CEA FAMILY
Embo J., 21, 2002
1ZUN
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Crystal Structure of a GTP-Regulated ATP Sulfurylase Heterodimer from Pseudomonas syringae
分子名称: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, ...
著者Mougous, J.D, Lee, D.H, Hubbard, S.C, Schelle, M.W, Vocadlo, D.J, Berger, J.M, Bertozzi, C.R.
登録日2005-05-31
公開日2006-01-17
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Molecular basis for g protein control of the prokaryotic ATP sulfurylase.
Mol.Cell, 21, 2006
3HVD
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The Protective Antigen Component of Anthrax Toxin Forms Functional Octameric Complexes
分子名称: CALCIUM ION, Protective antigen
著者Kintzer, A.F, Dong, K.C, Berger, J.M, Krantz, B.A.
登録日2009-06-15
公開日2009-08-25
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3.209 Å)
主引用文献The protective antigen component of anthrax toxin forms functional octameric complexes.
J.Mol.Biol., 392, 2009
1ZVU
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Structure of the full-length E. coli ParC subunit
分子名称: Topoisomerase IV subunit A
著者Corbett, K.D, Schoeffler, A.J, Thomsen, N.D, Berger, J.M.
登録日2005-06-02
公開日2005-07-05
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献The Structural Basis for Substrate Specificity in DNA Topoisomerase IV.
J.Mol.Biol., 351, 2005
1ZVT
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Structure of the E. coli ParC C-terminal domain
分子名称: Topoisomerase IV subunit A
著者Corbett, K.D, Schoeffler, A.J, Thomsen, N.D, Berger, J.M.
登録日2005-06-02
公開日2005-07-05
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献The Structural Basis for Substrate Specificity in DNA Topoisomerase IV.
J.Mol.Biol., 351, 2005
1XPU
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BU of 1xpu by Molmil
Structural mechanism of inhibition of the Rho transcription termination factor by the antibiotic 5a-(3-formylphenylsulfanyl)-dihydrobicyclomycin (FPDB)
分子名称: 5'-R(*CP*UP*CP*UP*CP*UP*CP*U)-3', 5A-(3-FORMYLPHENYLSULFANYL)-DIHYDROBICYCLOMYCIN, MAGNESIUM ION, ...
著者Skordalakes, E, Brogan, A.P, Park, B.S, Kohn, H, Berger, J.M.
登録日2004-10-09
公開日2004-11-02
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (3.05 Å)
主引用文献Structural mechanism of inhibition of the rho transcription termination factor by the antibiotic bicyclomycin
Structure, 13, 2005
1JL2
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Crystal structure of TCEO RNase H-a chimera combining the folding core from T. thermophilus RNase H and the remaining region of E. coli RNase H
分子名称: Chimera of Ribonuclease HI, Ribonuclease H
著者Robic, S, Berger, J.M, Marqusee, S.
登録日2001-07-13
公開日2002-01-18
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (1.76 Å)
主引用文献Contributions of folding cores to the thermostabilities of two ribonucleases H.
Protein Sci., 11, 2002
3KDE
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Crystal structure of the THAP domain from D. melanogaster P-element transposase in complex with its natural DNA binding site
分子名称: 5'-D(*(BRU)P*CP*CP*AP*CP*TP*TP*AP*AP*C)-3', 5'-D(*GP*TP*TP*AP*AP*GP*(BRU)P*GP*GP*A)-3', Transposable element P transposase, ...
著者Sabogal, A, Lyubimov, A.Y, Berger, J.M, Rio, D.C.
登録日2009-10-22
公開日2009-12-08
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.74 Å)
主引用文献THAP proteins target specific DNA sites through bipartite recognition of adjacent major and minor grooves.
Nat.Struct.Mol.Biol., 17, 2010
3ILW
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BU of 3ilw by Molmil
Structure of DNA gyrase subunit A N-terminal domain
分子名称: DNA gyrase subunit A, GLYCEROL
著者Tretter, E.M, Schoeffler, A.J, Weisfield, S.R, Berger, J.M, TB Structural Genomics Consortium (TBSGC)
登録日2009-08-07
公開日2009-10-06
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.603 Å)
主引用文献Crystal structure of the DNA gyrase GyrA N-terminal domain from Mycobacterium tuberculosis.
Proteins, 78, 2010
2A11
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Crystal Structure of Nuclease Domain of Ribonuclase III from Mycobacterium Tuberculosis
分子名称: CALCIUM ION, Ribonuclease III
著者Akey, D.L, Berger, J.M, Mycobacterium Tuberculosis Structural Proteomics Project (XMTB)
登録日2005-06-17
公開日2005-07-05
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structure of the nuclease domain of ribonuclease III from M. tuberculosis at 2.1 A
Protein Sci., 14, 2005
1Z5B
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Topoisomerase VI-B, ADP AlF4- bound dimer form
分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, SULFATE ION, ...
著者Corbett, K.D, Berger, J.M.
登録日2005-03-17
公開日2005-06-14
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural dissection of ATP turnover in the prototypical GHL ATPase TopoVI.
Structure, 13, 2005
1Z5A
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Topoisomerase VI-B, ADP-bound dimer form
分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Type II DNA topoisomerase VI subunit B
著者Corbett, K.D, Berger, J.M.
登録日2005-03-17
公開日2005-06-14
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural dissection of ATP turnover in the prototypical GHL ATPase TopoVI.
Structure, 13, 2005
1AJJ
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LDL RECEPTOR LIGAND-BINDING MODULE 5, CALCIUM-COORDINATING
分子名称: CALCIUM ION, LOW-DENSITY LIPOPROTEIN RECEPTOR, SULFATE ION
著者Fass, D, Blacklow, S.C, Kim, P.S, Berger, J.M.
登録日1997-05-04
公開日1997-07-07
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Molecular basis of familial hypercholesterolaemia from structure of LDL receptor module.
Nature, 388, 1997

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