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PDB: 171 件

7ZRD
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BU of 7zrd by Molmil
Cryo-EM map of the WT KdpFABC complex in the E1-P tight conformation, stabilised with the inhibitor orthovanadate
分子名称: CARDIOLIPIN, POTASSIUM ION, Potassium-transporting ATPase ATP-binding subunit, ...
著者Hielkema, L, Stock, C, Silberberg, J.M, Corey, R.A, Wunnicke, D, Stansfeld, P.J, Haenelt, I, Paulino, C.
登録日2022-05-04
公開日2022-11-16
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Inhibited KdpFABC transitions into an E1 off-cycle state.
Elife, 11, 2022
7ZRL
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BU of 7zrl by Molmil
Cryo-EM map of the unphosphorylated KdpFABC complex in the E2-P conformation, under turnover conditions
分子名称: POTASSIUM ION, Potassium-transporting ATPase ATP-binding subunit, Potassium-transporting ATPase KdpC subunit, ...
著者Hielkema, L, Stock, C, Silberberg, J.M, Corey, R.A, Wunnicke, D, Dubach, V.R.A, Stansfeld, P.J, Haenelt, I, Paulino, C.
登録日2022-05-04
公開日2022-11-16
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献Inhibited KdpFABC transitions into an E1 off-cycle state.
Elife, 11, 2022
7ZRE
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BU of 7zre by Molmil
Cryo-EM map of the WT KdpFABC complex in the E1-P tight conformation, under turnover conditions
分子名称: CARDIOLIPIN, POTASSIUM ION, Potassium-transporting ATPase ATP-binding subunit, ...
著者Hielkema, L, Stock, C, Silberberg, J.M, Corey, R.A, Wunnicke, D, Dubach, V.R.A, Stansfeld, P.J, Haenelt, I, Paulino, C.
登録日2022-05-04
公開日2022-11-16
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Inhibited KdpFABC transitions into an E1 off-cycle state.
Elife, 11, 2022
7ZRH
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BU of 7zrh by Molmil
Cryo-EM structure of the KdpFABC complex in a nucleotide-free E1 conformation loaded with K+
分子名称: CARDIOLIPIN, POTASSIUM ION, Potassium-transporting ATPase ATP-binding subunit, ...
著者Hielkema, L, Stock, C, Silberberg, J.M, Corey, R.A, Wunnicke, D, Stansfeld, P.J, Haenelt, I, Paulino, C.
登録日2022-05-04
公開日2022-11-16
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Inhibited KdpFABC transitions into an E1 off-cycle state.
Elife, 11, 2022
7ZRK
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BU of 7zrk by Molmil
Cryo-EM map of the WT KdpFABC complex in the E1-P_ADP conformation, under turnover conditions
分子名称: ADENOSINE-5'-DIPHOSPHATE, CARDIOLIPIN, POTASSIUM ION, ...
著者Hielkema, L, Stock, C, Silberberg, J.M, Corey, R.A, Wunnicke, D, Dubach, V.R.A, Stansfeld, P.J, Haenelt, I, Paulino, C.
登録日2022-05-04
公開日2022-11-16
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Inhibited KdpFABC transitions into an E1 off-cycle state.
Elife, 11, 2022
7ZRJ
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BU of 7zrj by Molmil
Cryo-EM structure of the KdpFABC complex in a nucleotide-free E1 conformation loaded with K+
分子名称: CARDIOLIPIN, POTASSIUM ION, Potassium-transporting ATPase ATP-binding subunit, ...
著者Hielkema, L, Stock, C, Silberberg, J.M, Corey, R.A, Wunnicke, D, Stansfeld, P.J, Haenelt, I, Paulino, C.
登録日2022-05-04
公開日2022-11-16
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Inhibited KdpFABC transitions into an E1 off-cycle state.
Elife, 11, 2022
7ZRI
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BU of 7zri by Molmil
Cryo-EM structure of the KdpFABC complex in a nucleotide-free E1 conformation loaded with K+
分子名称: CARDIOLIPIN, POTASSIUM ION, Potassium-transporting ATPase ATP-binding subunit, ...
著者Hielkema, L, Stock, C, Silberberg, J.M, Corey, R.A, Wunnicke, D, Stansfeld, P.J, Haenelt, I, Paulino, C.
登録日2022-05-04
公開日2022-11-16
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Inhibited KdpFABC transitions into an E1 off-cycle state.
Elife, 11, 2022
1AOL
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BU of 1aol by Molmil
FRIEND MURINE LEUKEMIA VIRUS RECEPTOR-BINDING DOMAIN
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, GP70, ZINC ION
著者Fass, D, Davey, R.A, Hamson, C.A, Kim, P.S, Cunningham, J.M, Berger, J.M.
登録日1997-07-08
公開日1997-10-15
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure of a murine leukemia virus receptor-binding glycoprotein at 2.0 angstrom resolution.
Science, 277, 1997
4XGC
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BU of 4xgc by Molmil
Crystal structure of the eukaryotic origin recognition complex
分子名称: CHLORIDE ION, Origin recognition complex subunit 1, Origin recognition complex subunit 2, ...
著者Bleichert, F, Botchan, M.R, Berger, J.M.
登録日2014-12-30
公開日2015-04-01
最終更新日2019-12-04
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献Crystal structure of the eukaryotic origin recognition complex.
Nature, 519, 2015
4WMG
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BU of 4wmg by Molmil
Structure of hen egg-white lysozyme from a microfludic harvesting device using synchrotron radiation (2.5A)
分子名称: Lysozyme C
著者Lyubimov, A.Y, Murray, T.D, Koehl, A, Uervirojnangkoorn, M, Zeldin, O.B, Cohen, A.E, Soltis, S.M, Baxter, E.M, Brewster, A.S, Sauter, N.K, Brunger, A.T, Berger, J.M.
登録日2014-10-08
公開日2015-04-22
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Capture and X-ray diffraction studies of protein microcrystals in a microfluidic trap array.
Acta Crystallogr.,Sect.D, 71, 2015
8TXR
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BU of 8txr by Molmil
E. coli ExoVII(H238A)
分子名称: Exodeoxyribonuclease 7 large subunit, Exodeoxyribonuclease 7 small subunit
著者Liu, C, Berger, J.M.
登録日2023-08-24
公開日2024-01-31
最終更新日2024-02-07
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Structure of Escherichia coli exonuclease VII.
Proc.Natl.Acad.Sci.USA, 121, 2024
5HE9
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BU of 5he9 by Molmil
Bacterial initiation protein in complex with Phage inhibitor protein
分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Helicase loader, ...
著者Hood, I.V, Berger, J.M.
登録日2016-01-05
公開日2016-06-08
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structure of inhibited replicative helicase loader from Staphylococcus aureus at 1.9 Angstrom resolution
To Be Published
5HE8
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Bacterial initiation protein
分子名称: Helicase loader, SULFATE ION
著者Hood, I.V, Berger, J.M.
登録日2016-01-05
公開日2016-06-08
最終更新日2019-12-04
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Bacterial initiation protein
To Be Published
1ERI
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BU of 1eri by Molmil
X-RAY STRUCTURE OF THE DNA-ECO RI ENDONUCLEASE-DNA RECOGNITION COMPLEX: THE RECOGNITION NETWORK AND THE INTEGRATION OF RECOGNITION AND CLEAVAGE
分子名称: DNA (5'-D(*TP*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), PROTEIN (ECO RI ENDONUCLEASE (E.C.3.1.21.4))
著者Kim, Y, Grable, J.C, Love, R, Greene, P.J, Rosenberg, J.M.
登録日1994-05-18
公開日1995-02-07
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Refinement of Eco RI endonuclease crystal structure: a revised protein chain tracing.
Science, 249, 1990
1BJT
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BU of 1bjt by Molmil
TOPOISOMERASE II RESIDUES 409-1201
分子名称: TOPOISOMERASE II
著者Fass, D, Bogden, C.E, Berger, J.M.
登録日1998-06-29
公開日1999-05-04
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Quaternary changes in topoisomerase II may direct orthogonal movement of two DNA strands.
Nat.Struct.Biol., 6, 1999
1L8Q
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BU of 1l8q by Molmil
CRYSTAL STRUCTURE OF DNA REPLICATION INITIATION FACTOR
分子名称: ADENOSINE-5'-DIPHOSPHATE, Chromosomal replication initiator protein dnaA, MAGNESIUM ION
著者Erzberger, J.P, Pirruccello, M.M, Berger, J.M.
登録日2002-03-21
公開日2002-09-25
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献The structure of bacterial DnaA: implications for general mechanisms underlying DNA replication initiation
Embo J., 21, 2002
1XIP
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BU of 1xip by Molmil
Crystal Structure of the N-terminal Domain of Nup159
分子名称: Nucleoporin NUP159
著者Weirich, C.S, Erzberger, J.P, Berger, J.M, Weis, K.
登録日2004-09-21
公開日2004-12-14
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献The N-Terminal Domain of Nup159 Forms a beta-Propeller that Functions in mRNA Export by Tethering the Helicase Dbp5 to the Nuclear Pore
Mol.Cell, 16, 2004
2A8V
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BU of 2a8v by Molmil
RHO TRANSCRIPTION TERMINATION FACTOR/RNA COMPLEX
分子名称: 5'-R(P*CP*CP*C)-3', 5'-R(P*CP*CP*CP*CP*CP*C)-3', RNA BINDING DOMAIN OF RHO TRANSCRIPTION TERMINATION FACTOR
著者Bogden, C.E, Fass, D, Bergman, N, Nichols, M.D, Berger, J.M.
登録日1998-11-08
公開日1999-04-26
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献The structural basis for terminator recognition by the Rho transcription termination factor.
Mol.Cell, 3, 1999
3FK3
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BU of 3fk3 by Molmil
Structure of the Yeats Domain, Yaf9
分子名称: Protein AF-9 homolog
著者Wang, A.Y, Schulze, J.M, Skordalakes, E, Berger, J.M, Rine, J, Kobor, M.S.
登録日2008-12-15
公開日2009-10-27
最終更新日2021-03-31
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Asf1-like structure of the conserved Yaf9 YEATS domain and role in H2A.Z deposition and acetylation
Proc.Natl.Acad.Sci.USA, 106, 2009
4TMA
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BU of 4tma by Molmil
Crystal structure of gyrase bound to its inhibitor YacG
分子名称: DNA gyrase inhibitor YacG, DNA gyrase subunit A, DNA gyrase subunit B, ...
著者Vos, S.M, Lyubimov, A.Y, Hershey, D.M, Schoeffler, A.J, Berger, J.M.
登録日2014-05-31
公開日2014-07-23
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Direct control of type IIA topoisomerase activity by a chromosomally encoded regulatory protein.
Genes Dev., 28, 2014
4Z98
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BU of 4z98 by Molmil
Crystal Structure of Hen Egg White Lysozyme using Serial X-ray Diffraction Data Collection
分子名称: ACETATE ION, Lysozyme C
著者Murray, T.D, Lyubimov, A.Y, Ogata, C.M, Uervirojnangkoorn, M, Brunger, A.T, Berger, J.M.
登録日2015-04-10
公開日2015-10-14
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献A high-transparency, micro-patternable chip for X-ray diffraction analysis of microcrystals under native growth conditions.
Acta Crystallogr. D Biol. Crystallogr., 71, 2015
5BTG
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BU of 5btg by Molmil
Crystal structure of a topoisomerase II complex
分子名称: (3S)-9-fluoro-3-methyl-10-(4-methylpiperazin-1-yl)-7-oxo-2,3-dihydro-7H-[1,4]oxazino[2,3,4-ij]quinoline-6-carboxylic acid, DNA gyrase subunit A, DNA gyrase subunit B, ...
著者Blower, T.R, Williamson, B.H, Kerns, R.J, Berger, J.M.
登録日2015-06-03
公開日2016-03-02
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure and stability of gyrase-fluoroquinolone cleaved complexes from Mycobacterium tuberculosis.
Proc.Natl.Acad.Sci.USA, 113, 2016
5CFP
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BU of 5cfp by Molmil
Crystal structure of anemone STING (Nematostella vectensis) 'humanized' F276K in complex with 3', 3' c-di-GMP, c[G(3', 5')pG(3', 5')p]'
分子名称: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), Stimulator of Interferon Genes
著者Kranzusch, P.J, Wilson, S.C, Lee, A.S.Y, Berger, J.M, Doudna, J.A, Vance, R.E.
登録日2015-07-08
公開日2015-08-26
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.066 Å)
主引用文献Ancient Origin of cGAS-STING Reveals Mechanism of Universal 2',3' cGAMP Signaling.
Mol.Cell, 59, 2015
5CFO
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BU of 5cfo by Molmil
Crystal structure of anemone STING (Nematostella vectensis) in apo 'rotated' open conformation
分子名称: Stimulator of Interferon Genes
著者Kranzusch, P.J, Wilson, S.C, Lee, A.S.Y, Berger, J.M, Doudna, J.A, Vance, R.E.
登録日2015-07-08
公開日2015-08-26
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.102 Å)
主引用文献Ancient Origin of cGAS-STING Reveals Mechanism of Universal 2',3' cGAMP Signaling.
Mol.Cell, 59, 2015
5CFL
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BU of 5cfl by Molmil
Crystal structure of anemone STING (Nematostella vectensis) in complex with 3', 3' c-di-GMP, c[G(3', 5')pG(3', 5')p]
分子名称: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), CITRATE ANION, Stimulator of Interferon Genes
著者Kranzusch, P.J, Wilson, S.C, Lee, A.S.Y, Berger, J.M, Doudna, J.A, Vance, R.E.
登録日2015-07-08
公開日2015-08-26
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (1.836 Å)
主引用文献Ancient Origin of cGAS-STING Reveals Mechanism of Universal 2',3' cGAMP Signaling.
Mol.Cell, 59, 2015

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件を2024-09-04に公開中

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