Loading
PDBj
English日本語简体中文繁體中文한국어
✖
ﾒﾆｭｰPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 114 件
2FWN
DownloadVisualize
BU of 2fwn by Molmil
Phosphorylation of an active site serine in a ThDP-dependent enzyme by phosphonate inactivation
分子名称: Benzoylformate decarboxylase, CALCIUM ION, MAGNESIUM ION, ...
著者Bera, A.K, Hasson, M.S.
登録日2006-02-02
公開日2006-12-19
最終更新日2021-08-04
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Mechanism-based inactivation of benzoylformate decarboxylase, a thiamin diphosphate-dependent enzyme
J.Am.Chem.Soc., 129, 2007
1YNO
DownloadVisualize
BU of 1yno by Molmil
High Resolution Structure of Benzoylformate Decarboxylase from Pseudomonas Putida Complexed with Thiamine Thiazolone Diphosphate
分子名称: 2-{3-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-4-METHYL-2-OXO-2,3-DIHYDRO-1,3-THIAZOL-5-YL}ETHYL TRIHYDROGEN DIPHOSPHATE, Benzoylformate decarboxylase, CALCIUM ION, ...
著者Bera, A.K, Hasson, M.S.
登録日2005-01-24
公開日2006-01-17
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.22 Å)
主引用文献High Resolution Structure of Benzoylformate Decarboxylase from Pseudomonas Putida Complexed with Thiamine Thiazolone Diphosphate;
To be Published
5T13
DownloadVisualize
BU of 5t13 by Molmil
Structure of the Cyanuric Acid Hydrolase TrzD Reveals Product Exit Channel
分子名称: CARBON DIOXIDE, Cyanuric acid amidohydrolase, MAGNESIUM ION
著者Bera, A.K, Wackett, L.P.
登録日2016-08-17
公開日2017-04-12
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.19 Å)
主引用文献Structure of the Cyanuric Acid Hydrolase TrzD Reveals Product Exit Channel.
Sci Rep, 7, 2017
1PI3
DownloadVisualize
BU of 1pi3 by Molmil
E28Q mutant Benzoylformate Decarboxylase From Pseudomonas Putida
分子名称: 2-{3-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-4-METHYL-2-OXO-2,3-DIHYDRO-1,3-THIAZOL-5-YL}ETHYL TRIHYDROGEN DIPHOSPHATE, Benzoylformate decarboxylase, CALCIUM ION, ...
著者Bera, A.K, Hasson, M.S.
登録日2003-05-29
公開日2004-11-23
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献High resolution structure of Benzoylformate Decarboxylate E28Q mutant
To be Published
1PO7
DownloadVisualize
BU of 1po7 by Molmil
HIGH RESOLUTION STRUCTURE OF E28A MUTANT BENZOYLFORMATE DECARBOXYLASE FROM PSEUDOMONAS PUTIDA
分子名称: 2-{3-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-4-METHYL-2-OXO-2,3-DIHYDRO-1,3-THIAZOL-5-YL}ETHYL TRIHYDROGEN DIPHOSPHATE, Benzoylformate decarboxylase, CALCIUM ION, ...
著者Bera, A.K, Hasson, M.S.
登録日2003-06-13
公開日2004-11-23
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献High Resolution Structure of E28A Mutant Benzoylformate Decarboxylase from Pseudomonas Putida
To be Published
1Q6Z
DownloadVisualize
BU of 1q6z by Molmil
HIGH RESOLUTION STRUCTURE OF E28A MUTANT BENZOYLFORMATE DECARBOXYLASE FROM PSEUDOMONAS PUTIDA COMPLEXED WITH THIAMIN THIAZOLONE DIPHOSPHATE
分子名称: 2-{3-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-4-METHYL-2-OXO-2,3-DIHYDRO-1,3-THIAZOL-5-YL}ETHYL TRIHYDROGEN DIPHOSPHATE, Benzoylformate decarboxylase, CALCIUM ION, ...
著者Bera, A.K, Hasson, M.S.
登録日2003-08-14
公開日2004-11-23
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (1 Å)
主引用文献High Resolution Structure of E28A Mutant Benzoylformate Decarboxylase from Pseudomonas Putida Complexed with Thiamin Thiazolone Diphosphate
To be Published
2FN3
DownloadVisualize
BU of 2fn3 by Molmil
High resolution structure of s26a mutant of benzoylformate decarboxylase from pseudomonas putida complexed with thiamine thiazolone diphosphate
分子名称: 2-{3-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-4-METHYL-2-OXO-2,3-DIHYDRO-1,3-THIAZOL-5-YL}ETHYL TRIHYDROGEN DIPHOSPHATE, Benzoylformate decarboxylase, CALCIUM ION, ...
著者Bera, A.K, Hasson, M.S.
登録日2006-01-10
公開日2006-12-19
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1 Å)
主引用文献High resolution structure of benzoylformate decarboxylase active site mutant s26a from pseudomonas putida complexed with thiamine thiazolone diphosphate
To be Published
8VEI
DownloadVisualize
BU of 8vei by Molmil
De novo designed colic acid binder CHD_r1
分子名称: CHD_r1
著者Bera, A.K, An, L, Baker, D.
登録日2023-12-19
公開日2024-07-17
実験手法X-RAY DIFFRACTION (2.03 Å)
主引用文献Binding and sensing diverse small molecules using shape complementary pseudocycles
To Be Published
8VEJ
DownloadVisualize
BU of 8vej by Molmil
De novo designed cholic acid binder: CHD_buttress
分子名称: CHD_buttress, CHOLIC ACID
著者Bera, A.K, Tran, L, Kang, A, Baker, D.
登録日2023-12-19
公開日2024-07-17
実験手法X-RAY DIFFRACTION (3.59 Å)
主引用文献Binding and sensing diverse small molecules using shape complementary pseudocycles
To Be Published
8UZL
DownloadVisualize
BU of 8uzl by Molmil
Designed Transmembrane beta-barrel- TMB10_163
分子名称: Designed Transmembrane beta-barrel TMB10_163, HEXANE-1,6-DIOL
著者Bera, A.K, Lemma, S.B, Kang, A, Baker, D.
登録日2023-11-15
公開日2024-07-17
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Sculpting conducting nanopore size and shape through de novo protein design
Science, 2024
7RMY
DownloadVisualize
BU of 7rmy by Molmil
De Novo designed tunable protein pockets, D_3-337
分子名称: De Novo designed tunable homodimer, D_3-337
著者Bera, A.K, Hicks, D.R, Kang, A, Sankaran, B, Baker, D.
登録日2021-07-28
公開日2022-08-03
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (3.17 Å)
主引用文献De novo design of protein homodimers containing tunable symmetric protein pockets.
Proc.Natl.Acad.Sci.USA, 119, 2022
7RMX
DownloadVisualize
BU of 7rmx by Molmil
Structure of De Novo designed tunable symmetric protein pockets
分子名称: Tunable symmetric protein, D_3_212
著者Bera, A.K, Hicks, D.R, Kang, A, Sankaran, B, Baker, D.
登録日2021-07-28
公開日2022-08-03
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献De novo design of protein homodimers containing tunable symmetric protein pockets.
Proc.Natl.Acad.Sci.USA, 119, 2022
3L2K
DownloadVisualize
BU of 3l2k by Molmil
Structure of phenazine antibiotic biosynthesis protein with substrate
分子名称: EhpF, phenazine-1,6-dicarboxylic acid
著者Bera, A.K, Atanasova, V, Parsons, J.F.
登録日2009-12-15
公開日2010-05-26
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structure of the D-alanylgriseoluteic acid biosynthetic protein EhpF, an atypical member of the ANL superfamily of adenylating enzymes.
Acta Crystallogr.,Sect.D, 66, 2010
6X9Z
DownloadVisualize
BU of 6x9z by Molmil
De novo design of transmembrane beta-barrels
分子名称: Transmembrane beta-barrels
著者Bera, A.K, Vorobieva, A.A, Kang, A.S, Baker, D.
登録日2020-06-03
公開日2021-02-17
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献De novo design of transmembrane beta barrels.
Science, 371, 2021
6XI6
DownloadVisualize
BU of 6xi6 by Molmil
Hierarchical design of multi-scale protein complexes by combinatorial assembly of oligomeric helical bundle and repeat protein building blocks
分子名称: helical fusion design
著者Bera, A.K, Hsia, Y, Kang, A.S, Shankaran, B, Baker, D.
登録日2020-06-19
公開日2021-06-02
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.69 Å)
主引用文献Design of multi-scale protein complexes by hierarchical building block fusion.
Nat Commun, 12, 2021
6XH5
DownloadVisualize
BU of 6xh5 by Molmil
Hierarchical design of multi-scale protein complexes by combinatorial assembly of oligomeric helical bundle and repeat protein building blocks
分子名称: helical fusion design
著者Bera, A.K, Hsia, Y, Kang, A.S, Baker, D.
登録日2020-06-18
公開日2021-06-02
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (3.32 Å)
主引用文献Design of multi-scale protein complexes by hierarchical building block fusion.
Nat Commun, 12, 2021
1P4A
DownloadVisualize
BU of 1p4a by Molmil
Crystal Structure of the PurR complexed with cPRPP
分子名称: 1-ALPHA-PYROPHOSPHORYL-2-ALPHA,3-ALPHA-DIHYDROXY-4-BETA-CYCLOPENTANE-METHANOL-5-PHOSPHATE, Pur operon repressor
著者Bera, A.K, Zhu, J, Zalkin, H, Smith, J.L.
登録日2003-04-22
公開日2003-12-09
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.22 Å)
主引用文献Functional dissection of the Bacillus subtilis pur operator site.
J.Bacteriol., 185, 2003
5DEI
DownloadVisualize
BU of 5dei by Molmil
BENZOYLFORMATE DECARBOXYLASE FROM PSEUDOMONAS PUTIDA
分子名称: BICARBONATE ION, Benzoylformate decarboxylase, CALCIUM ION, ...
著者Bera, A.K, Hasson, M.S.
登録日2015-08-25
公開日2015-09-16
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献BENZOYLFORMATE DECARBOXYLASE FROM PSEUDOMONAS PUTIDA
to be published
5DGD
DownloadVisualize
BU of 5dgd by Molmil
Benzoylformate decarboxylase F464I and A460V mutant from Pseudomonas putida
分子名称: Benzoylformate decarboxylase, CALCIUM ION, MAGNESIUM ION, ...
著者Bera, A.K, Hasson, M.S.
登録日2015-08-27
公開日2015-09-16
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.13 Å)
主引用文献Benzoylformate decarboxylase F464I and A460V mutant from Pseudomonas putida
to be published
5DGT
DownloadVisualize
BU of 5dgt by Molmil
BENZOYLFORMATE DECARBOXYLASE H70A MUTANT at pH 8.5 FROM PSEUDOMONAS PUTIDA
分子名称: 2-{3-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-4-METHYL-2-OXO-2,3-DIHYDRO-1,3-THIAZOL-5-YL}ETHYL TRIHYDROGEN DIPHOSPHATE, Benzoylformate decarboxylase, CALCIUM ION, ...
著者Bera, A.K, Hasson, M.S.
登録日2015-08-28
公開日2015-09-23
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.081 Å)
主引用文献BENZOYLFORMATE DECARBOXYLASE H70A MUTANT at pH 8.5 FROM PSEUDOMONAS PUTIDA
to be published
8UTK
DownloadVisualize
BU of 8utk by Molmil
IL-23R minibinder - 23R-B04dslf02IB
分子名称: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE, 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE, 23R-B04dslf02IB, ...
著者Bera, A.K, Berger, S.A, Kang, A, Baker, D.
登録日2023-10-31
公開日2024-07-10
実験手法X-RAY DIFFRACTION (1.94 Å)
主引用文献Preclinical proof of principle for orally delivered Th17 antagonist miniproteins.
Cell, 2024
8T6E
DownloadVisualize
BU of 8t6e by Molmil
Crystal structure of T33-28.3: Deep-learning sequence design of co-assembling tetrahedron protein nanoparticles
分子名称: T33-28.3: A, T33-28.3: B
著者Bera, A.K, de Haas, R.J, Kang, A, Sankaran, B, King, N.P.
登録日2023-06-15
公開日2024-04-24
実験手法X-RAY DIFFRACTION (2.48 Å)
主引用文献Rapid and automated design of two-component protein nanomaterials using ProteinMPNN.
Proc.Natl.Acad.Sci.USA, 121, 2024
8T6C
DownloadVisualize
BU of 8t6c by Molmil
Crystal structure of T33-18.2: Deep-learning sequence design of co-assembling tetrahedron protein nanoparticles
分子名称: T33-18.2 : A, T33-18.2 : B
著者Bera, A.K, de Haas, R.J, Kang, A, Sankaran, B, King, N.P.
登録日2023-06-15
公開日2024-04-24
実験手法X-RAY DIFFRACTION (1.92 Å)
主引用文献Rapid and automated design of two-component protein nanomaterials using ProteinMPNN.
Proc.Natl.Acad.Sci.USA, 121, 2024
8T6N
DownloadVisualize
BU of 8t6n by Molmil
Crystal structure of T33-27.1: Deep-learning sequence design of co-assembling tetrahedron protein nanoparticles
分子名称: T33-27.1 : A, T33-27.1 : B
著者Bera, A.K, de Haas, R.J, Kang, A, Sankaran, B, King, N.P.
登録日2023-06-16
公開日2024-04-24
実験手法X-RAY DIFFRACTION (3.63 Å)
主引用文献Rapid and automated design of two-component protein nanomaterials using ProteinMPNN.
Proc.Natl.Acad.Sci.USA, 121, 2024
6MQT
DownloadVisualize
BU of 6mqt by Molmil
HRAS G12S in complex with GDP
分子名称: GTPase HRas, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION
著者Bera, A.K, Westover, K.D.
登録日2018-10-10
公開日2020-04-15
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.498 Å)
主引用文献HRAS G12S in complex with GDP
To Be Published

222624

件を2024-07-17に公開中

PDB statisticsPDBj update infoContact PDBjnumon