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PDB: 121 results

5CNC
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BU of 5cnc by Molmil
Ultrafast dynamics in myoglobin: 0.6 ps time delay
Descriptor: CARBON MONOXIDE, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Barends, T.R.M, Foucar, L, Ardevol, A, Nass, K.J, Aquila, A, Botha, S, Doak, R.B, Falahati, K, Hartmann, E, Hilpert, M, Heinz, M, Hoffmann, M.C, Koefinger, J, Koglin, J, Kovacsova, G, Liang, M, Milathianaki, D, Lemke, H.T, Reinstein, J, Roome, C.M, Shoeman, R.L, Williams, G.J, Burghardt, I, Hummer, G, Boutet, S, Schlichting, I.
Deposit date:2015-07-17
Release date:2015-09-16
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Direct observation of ultrafast collective motions in CO myoglobin upon ligand dissociation.
Science, 350, 2015
4J80
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BU of 4j80 by Molmil
Thermus thermophilus DnaJ
Descriptor: Chaperone protein DnaJ 2
Authors:Barends, T.R.M, Brosi, R.W, Steinmetz, A, Scherer, A, Hartmann, E, Eschenbach, J, Lorenz, T, Seidel, R, Shoeman, R, Zimmermann, S, Bittl, R, Schlichting, I, Reinstein, J.
Deposit date:2013-02-14
Release date:2013-07-31
Last modified:2013-10-09
Method:EPR (2.9 Å), X-RAY DIFFRACTION
Cite:Combining crystallography and EPR: crystal and solution structures of the multidomain cochaperone DnaJ.
Acta Crystallogr.,Sect.D, 69, 2013
4J7Z
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BU of 4j7z by Molmil
Thermus thermophilus DNAJ J- and G/F-DOMAINS
Descriptor: Chaperone protein DnaJ 2, GLYCEROL
Authors:Barends, T.R.M, Brosi, R.W, Steinmetz, A, Scherer, A, Hartmann, E, Eschenbach, J, Lorenz, T, Seidel, R, Shoeman, R, Zimmermann, S, Bittl, R, Schlichting, I, Reinstein, J.
Deposit date:2013-02-14
Release date:2013-07-31
Last modified:2024-02-28
Method:EPR (1.64 Å), X-RAY DIFFRACTION
Cite:Combining crystallography and EPR: crystal and solution structures of the multidomain cochaperone DnaJ.
Acta Crystallogr.,Sect.D, 69, 2013
4N5R
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BU of 4n5r by Molmil
Hen egg-white lysozyme phased using free-electron laser data
Descriptor: 10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE 1,4,7-TRIACETIC ACID, GADOLINIUM ATOM, Lysozyme C
Authors:Barends, T.R.M, Foucar, L, Botha, S, Doak, R.B, Shoeman, R.L, Nass, K, Koglin, J.E, Williams, G.J, Boutet, S, Messerschmidt, M, Schlichting, I.
Deposit date:2013-10-10
Release date:2013-11-27
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:De novo protein crystal structure determination from X-ray free-electron laser data.
Nature, 505, 2014
3CVY
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BU of 3cvy by Molmil
Drosophila melanogaster (6-4) photolyase bound to repaired ds DNA
Descriptor: DNA (5'-D(*DAP*DCP*DAP*DGP*DCP*DGP*DGP*DTP*DTP*DGP*DCP*DAP*DGP*DGP*DT)-3'), DNA (5'-D(*DTP*DAP*DCP*DCP*DTP*DGP*DCP*DAP*DAP*DCP*DCP*DGP*DCP*DTP*DG)-3'), FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Maul, M.J, Barends, T.R.M, Glas, A.F, Cryle, M.J, Schlichting, I, Carell, T.
Deposit date:2008-04-20
Release date:2008-11-04
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure and mechanism of a DNA (6-4) photolyase.
Angew.Chem.Int.Ed.Engl., 47, 2008
4XOU
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BU of 4xou by Molmil
Crystal structure of the SR Ca2+-ATPase in the Ca2-E1-MgAMPPCP form determined by serial femtosecond crystallography using an X-ray free-electron laser.
Descriptor: CALCIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, POTASSIUM ION, ...
Authors:Bublitz, M, Nass, K, Drachmann, N.D, Markvardsen, A.J, Gutmann, M.J, Barends, T.R.M, Mattle, D, Shoeman, R.L, Doak, R.B, Boutet, S, Messerschmidt, M, Seibert, M.M, Williams, G.J, Foucar, L, Reinhard, L, Sitsel, O, Gregersen, J.L, Clausen, J.D, Boesen, T, Gotfryd, K, Wang, K.-T, Olesen, C, Moller, J.V, Nissen, P, Schlichting, I.
Deposit date:2015-01-16
Release date:2015-06-10
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural studies of P-type ATPase-ligand complexes using an X-ray free-electron laser.
Iucrj, 2, 2015
2J9X
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BU of 2j9x by Molmil
Tryptophan Synthase in complex with GP, alpha-D,L-glycerol-phosphate, Cs, pH6.5 - alpha aminoacrylate form - (GP)E(A-A)
Descriptor: 2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)AMINO]ACRYLIC ACID, CESIUM ION, DIMETHYL SULFOXIDE, ...
Authors:Ngo, H, Kimmich, N, Harris, R, Niks, D, Blumenstein, L, Kulik, V, Barends, T.R, Schlichting, I, Dunn, M.F.
Deposit date:2006-11-16
Release date:2007-06-26
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Allosteric Regulation of Substrate Channeling in Tryptophan Synthase: Modulation of the L-Serine Reaction in Stage I of the Beta-Reaction by Alpha-Site Ligands.
Biochemistry, 46, 2007
2RH9
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BU of 2rh9 by Molmil
Tryptophan synthase complexed with IGP, internal aldimine, pH 9.0
Descriptor: INDOLE-3-GLYCEROL PHOSPHATE, PYRIDOXAL-5'-PHOSPHATE, SODIUM ION, ...
Authors:Kulik, V, Barends, T.R.M, Schlichting, I.
Deposit date:2007-10-08
Release date:2007-11-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Tryptophan synthase complexed with IGP, internal aldimine, pH 9.0.
To be Published
5FGT
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BU of 5fgt by Molmil
Thaumatin solved by native sulphur-SAD using free-electron laser radiation
Descriptor: L(+)-TARTARIC ACID, Thaumatin-1
Authors:Nass, K.J, Meinhart, A, Barends, T.R.M, Foucar, L, Gorel, A, Aquila, A, Botha, S, Doak, R.B, Koglin, J, Liang, M, Shoeman, R.L, Williams, G.K, Boutet, S, Schlichting, I.
Deposit date:2015-12-21
Release date:2016-06-08
Last modified:2018-11-14
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Protein structure determination by single-wavelength anomalous diffraction phasing of X-ray free-electron laser data.
Iucrj, 3, 2016
5FGX
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BU of 5fgx by Molmil
Thaumatin solved by native sulphur SAD using synchrotron radiation
Descriptor: L(+)-TARTARIC ACID, Thaumatin-1
Authors:Nass, K.J, Meinhart, A, Barends, T.R.M, Foucar, L, Gorel, A, Aquila, A, Botha, S, Doak, R.B, Koglin, J, Liang, M, Shoeman, R.L, Williams, G.J, Boutet, S, Schlichting, I.
Deposit date:2015-12-21
Release date:2016-06-08
Method:X-RAY DIFFRACTION (2.134 Å)
Cite:Protein structure determination by single-wavelength anomalous diffraction phasing of X-ray free-electron laser data.
Iucrj, 3, 2016
6RMK
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BU of 6rmk by Molmil
Bacteriorhodopsin, dark state, cell 2, refined using the same protocol as sub-ps time delays
Descriptor: Bacteriorhodopsin, RETINAL
Authors:Nass Kovacs, G, Colletier, J.-P, Gruenbein, M.L, Stensitzki, T, Batyuk, A, Carbajo, S, Doak, R.B, Ehrenberg, D, Foucar, L, Gasper, R, Gorel, A, Hilpert, M, Kloos, M, Koglin, J, Reinstein, J, Roome, C.M, Schlesinger, R, Seaberg, M, Shoeman, R.L, Stricker, M, Boutet, S, Haacke, S, Heberle, J, Domratcheva, T, Barends, T.R.M, Schlichting, I.
Deposit date:2019-05-07
Release date:2019-06-05
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Three-dimensional view of ultrafast dynamics in photoexcited bacteriorhodopsin.
Nat Commun, 10, 2019
6HAL
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BU of 6hal by Molmil
Human carbonmonoxy hemoglobin SFX dataset
Descriptor: CARBON MONOXIDE, Hemoglobin subunit alpha, Hemoglobin subunit beta, ...
Authors:Doak, B, Gorel, A, Foucar, L, Barends, T.R.M, Gruenbein, M.L, Hilpert, M, Kloos, M, Nass Kovacs, G, Roome, C.M, Shoeman, R.L, Stricker, M, Tono, K, You, D, Ueda, K, Sherrell, D.A, Owen, R.L, Schlichting, I.
Deposit date:2018-08-07
Release date:2018-10-17
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystallography on a chip - without the chip: sheet-on-sheet sandwich.
Acta Crystallogr D Struct Biol, 74, 2018
6HIF
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BU of 6hif by Molmil
Kuenenia stuttgartiensis hydrazine dehydrogenase complex
Descriptor: GLYCEROL, HEME C, Hydrazine dehydrogenase, ...
Authors:Akram, M, Dietl, A, Mersdorf, U, Prinz, S, Maalcke, W, Keltjens, J, Ferousi, C, de Almeida, N.M, Reimann, J, Kartal, B, Jetten, M.S.M, Parey, K, Barends, T.R.M.
Deposit date:2018-08-29
Release date:2019-04-17
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:A 192-heme electron transfer network in the hydrazine dehydrogenase complex.
Sci Adv, 5, 2019
6ZH7
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BU of 6zh7 by Molmil
Crystal structure of fatty acid photodecarboxylase in the dark state determined by serial femtosecond crystallography at room temperature
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Fatty acid photodecarboxylase, chloroplastic, ...
Authors:Hadjidemetriou, K, Coquelle, N, Weik, M, Schlichting, I, Barends, T.R.M, Colletier, J.P.
Deposit date:2020-06-21
Release date:2021-04-14
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:Mechanism and dynamics of fatty acid photodecarboxylase.
Science, 372, 2021
3CVU
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BU of 3cvu by Molmil
Drosophila melanogaster (6-4) photolyase bound to ds DNA with a T-T (6-4) photolesion
Descriptor: DNA (5'-D(*DAP*DCP*DAP*DGP*DCP*DGP*DGP*(64T)P*(5PY)P*DGP*DCP*DAP*DGP*DGP*DT)-3'), DNA (5'-D(*DTP*DAP*DCP*DCP*DTP*DGP*DCP*DAP*DAP*DCP*DCP*DGP*DCP*DTP*DG)-3'), FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Maul, M.J, Barends, T.R.M, Glas, A.F, Cryle, M.J, Schlichting, I, Carell, T.
Deposit date:2008-04-20
Release date:2008-11-04
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure and mechanism of a DNA (6-4) photolyase.
Angew.Chem.Int.Ed.Engl., 47, 2008
3CVW
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BU of 3cvw by Molmil
Drosophila melanogaster (6-4) photolyase H365N mutant bound to ds DNA with a T-T (6-4) photolesion and cofactor F0
Descriptor: 1-deoxy-1-(8-hydroxy-2,4-dioxo-3,4-dihydropyrimido[4,5-b]quinolin-10(2H)-yl)-D-ribitol, DNA (5'-D(*DAP*DCP*DAP*DGP*DCP*DGP*DGP*(64T)P*(5PY)P*DGP*DCP*DAP*DGP*DGP*DT)-3'), DNA (5'-D(*DTP*DAP*DCP*DCP*DTP*DGP*DCP*DAP*DAP*DCP*DCP*DGP*DCP*DTP*DG)-3'), ...
Authors:Maul, M.J, Barends, T.R.M, Glas, A.F, Cryle, M.J, Schlichting, I, Carell, T.
Deposit date:2008-04-20
Release date:2009-10-13
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structure and mechanism of a cofactor f0 accelerated (6-4) photolyase from the fruit fly
To be Published
3CVX
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BU of 3cvx by Molmil
Drosophila melanogaster (6-4) photolyase H369M mutant bound to ds DNA with a T-T (6-4) photolesion
Descriptor: DNA (5'-D(*DAP*DCP*DAP*DGP*DCP*DGP*DGP*(64T)P*(5PY)P*DGP*DCP*DAP*DGP*DGP*DT)-3'), DNA (5'-D(*DTP*DAP*DCP*DCP*DTP*DGP*DCP*DAP*DAP*DCP*DCP*DGP*DCP*DTP*DG)-3'), FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Maul, M.J, Barends, T.R.M, Glas, A.F, Cryle, M.J, Schlichting, I, Carell, T.
Deposit date:2008-04-20
Release date:2009-10-13
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structure and mechanism of a coenzyme F0 accelerated (6-4) photolyase from the fruit fly
To be Published
3CVV
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BU of 3cvv by Molmil
Drosophila melanogaster (6-4) photolyase bound to ds DNA with a T-T (6-4) photolesion and F0 cofactor
Descriptor: 1,2-ETHANEDIOL, 1-deoxy-1-(8-hydroxy-2,4-dioxo-3,4-dihydropyrimido[4,5-b]quinolin-10(2H)-yl)-D-ribitol, DNA (5'-D(*DAP*DCP*DAP*DGP*DCP*DGP*DGP*(64T)P*(5PY)P*DGP*DCP*DAP*DGP*DGP*DT)-3'), ...
Authors:Glas, A.F, Maul, M.J, Cryle, M.J, Barends, T.R.M, Schneider, S, Kaya, E, Schlichting, I, Carell, T.
Deposit date:2008-04-20
Release date:2009-06-16
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The archaeal cofactor F0 is a light-harvesting antenna chromophore in eukaryotes.
Proc.Natl.Acad.Sci.USA, 106, 2009
8AYB
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BU of 8ayb by Molmil
anammox-specific FabZ from Scalindua brodae
Descriptor: Beta-hydroxyacyl-(Acyl-carrier-protein) dehydratase
Authors:Dietl, A, Barends, T.R.M.
Deposit date:2022-09-02
Release date:2023-03-29
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structures of an unusual 3-hydroxyacyl dehydratase (FabZ) from a ladderane-producing organism with an unexpected substrate preference.
J.Biol.Chem., 299, 2023
4ZVB
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BU of 4zvb by Molmil
Crystal structure of globin domain of the E. coli DosC - form II (ferrous)
Descriptor: Diguanylate cyclase DosC, PROTOPORPHYRIN IX CONTAINING FE
Authors:Tarnawski, M, Barends, T.R.M, Schlichting, I.
Deposit date:2015-05-18
Release date:2015-11-11
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural analysis of an oxygen-regulated diguanylate cyclase.
Acta Crystallogr.,Sect.D, 71, 2015
4ZVF
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BU of 4zvf by Molmil
Crystal structure of GGDEF domain of the E. coli DosC - form II (GTP-alpha-S-bound)
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, Diguanylate cyclase DosC, ...
Authors:Tarnawski, M, Barends, T.R.M, Schlichting, I.
Deposit date:2015-05-18
Release date:2015-11-11
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Structural analysis of an oxygen-regulated diguanylate cyclase.
Acta Crystallogr.,Sect.D, 71, 2015
4ZVG
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BU of 4zvg by Molmil
Crystal structure of GGDEF domain of the E. coli DosC - form III
Descriptor: Diguanylate cyclase DosC
Authors:Tarnawski, M, Barends, T.R.M, Schlichting, I.
Deposit date:2015-05-18
Release date:2015-11-11
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural analysis of an oxygen-regulated diguanylate cyclase.
Acta Crystallogr.,Sect.D, 71, 2015
4ZVC
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BU of 4zvc by Molmil
Crystal structure of MID domain of the E. coli DosC - form I
Descriptor: BENZOIC ACID, Diguanylate cyclase DosC
Authors:Tarnawski, M, Barends, T.R.M, Schlichting, I.
Deposit date:2015-05-18
Release date:2015-11-11
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural analysis of an oxygen-regulated diguanylate cyclase.
Acta Crystallogr.,Sect.D, 71, 2015
4ZVD
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BU of 4zvd by Molmil
Crystal structure of MID domain of the E. coli DosC - form II
Descriptor: Diguanylate cyclase DosC
Authors:Tarnawski, M, Barends, T.R.M, Schlichting, I.
Deposit date:2015-05-18
Release date:2015-11-11
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural analysis of an oxygen-regulated diguanylate cyclase.
Acta Crystallogr.,Sect.D, 71, 2015
4ZVH
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BU of 4zvh by Molmil
Crystal structure of GGDEF domain of the E. coli DosC - form IV
Descriptor: Diguanylate cyclase DosC, SULFATE ION
Authors:Tarnawski, M, Barends, T.R.M, Schlichting, I.
Deposit date:2015-05-18
Release date:2015-11-11
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3.301 Å)
Cite:Structural analysis of an oxygen-regulated diguanylate cyclase.
Acta Crystallogr.,Sect.D, 71, 2015

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