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PDB: 42 件

4GVG
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Crystal structure of Salmonella typhimurium family 3 glycoside hydrolase (NagZ)
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Beta-hexosaminidase
著者Bacik, J.P, Mark, B.L.
登録日2012-08-30
公開日2012-12-19
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Active Site Plasticity within the Glycoside Hydrolase NagZ Underlies a Dynamic Mechanism of Substrate Distortion.
Chem.Biol., 19, 2012
4GVF
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Crystal structure of Salmonella typhimurium family 3 glycoside hydrolase (NagZ) bound to GlcNAc
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 2-acetamido-2-deoxy-alpha-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Bacik, J.P, Mark, B.L.
登録日2012-08-30
公開日2012-12-19
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Active Site Plasticity within the Glycoside Hydrolase NagZ Underlies a Dynamic Mechanism of Substrate Distortion.
Chem.Biol., 19, 2012
4GVI
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Crystal structure of mutant (D248N) Salmonella typhimurium family 3 glycoside hydrolase (NagZ) in complex with GlcNAc-1,6-anhMurNAc
分子名称: 2-(2-ACETYLAMINO-4-HYDROXY-6,8-DIOXA-BICYCLO[3.2.1]OCT-3-YLOXY)-PROPIONIC ACID, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Bacik, J.P, Mark, B.L.
登録日2012-08-30
公開日2012-12-19
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Active Site Plasticity within the Glycoside Hydrolase NagZ Underlies a Dynamic Mechanism of Substrate Distortion.
Chem.Biol., 19, 2012
4GYJ
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Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-N-acetyl-alpha-muramic acid, Uncharacterized lipoprotein ybbD
著者Bacik, J.P, Mark, B.L.
登録日2012-09-05
公開日2012-12-19
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Active Site Plasticity within the Glycoside Hydrolase NagZ Underlies a Dynamic Mechanism of Substrate Distortion.
Chem.Biol., 19, 2012
4GVH
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Crystal structure of Salmonella typhimurium family 3 glycoside hydrolase (NagZ) covalently bound to 5-fluoro-GlcNAc.
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 5-fluoro-N-acetyl-alpha-D-glucosamine, Beta-hexosaminidase
著者Bacik, J.P, Mark, B.L.
登録日2012-08-30
公開日2012-12-19
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Active Site Plasticity within the Glycoside Hydrolase NagZ Underlies a Dynamic Mechanism of Substrate Distortion.
Chem.Biol., 19, 2012
4GYK
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BU of 4gyk by Molmil
Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1211)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-N-acetyl-alpha-muramic acid, Glycoside Hydrolase NagZ
著者Bacik, J.P, Mark, B.L.
登録日2012-09-05
公開日2012-12-19
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Active Site Plasticity within the Glycoside Hydrolase NagZ Underlies a Dynamic Mechanism of Substrate Distortion.
Chem.Biol., 19, 2012
3H8V
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Human Ubiquitin-activating Enzyme 5 in Complex with ATP
分子名称: ADENOSINE-5'-TRIPHOSPHATE, Ubiquitin-like modifier-activating enzyme 5, ZINC ION
著者Walker, J.R, Bacik, J.P, Rastgoo, N, Weigelt, J, Bountra, C, Edwards, A.M, Arrowsmith, C.H, Bochkarev, A, Dhe-Paganon, S, Structural Genomics Consortium (SGC)
登録日2009-04-29
公開日2009-05-26
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of the human ubiquitin-activating enzyme 5 (UBA5) bound to ATP: mechanistic insights into a minimalistic E1 enzyme.
J.Biol.Chem., 285, 2010
3GUC
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Human Ubiquitin-activating Enzyme 5 in Complex with AMPPNP
分子名称: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Ubiquitin-like modifier-activating enzyme 5, ZINC ION
著者Walker, J.R, Bacik, J.P, Li, Y, Weigelt, J, Bountra, C, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A, Dhe-Paganon, S, Structural Genomics Consortium (SGC)
登録日2009-03-29
公開日2009-05-26
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Human Ubiquitin-activating Enzyme 5 in Complex with AMPPNP
To be Published
5V1Q
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Crystal structure of Streptococcus suis SuiB
分子名称: IRON/SULFUR CLUSTER, Radical SAM
著者Davis, K.M, Bacik, J.P, Ando, N.
登録日2017-03-02
公開日2017-08-30
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structures of the peptide-modifying radical SAM enzyme SuiB elucidate the basis of substrate recognition.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5V1S
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BU of 5v1s by Molmil
Crystal structure of Streptococcus suis SuiB bound to S-adenosylmethionine
分子名称: IRON/SULFUR CLUSTER, Radical SAM, S-ADENOSYLMETHIONINE
著者Davis, K.M, Bacik, J.P, Ando, N.
登録日2017-03-02
公開日2017-08-30
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.492 Å)
主引用文献Structures of the peptide-modifying radical SAM enzyme SuiB elucidate the basis of substrate recognition.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5V1T
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BU of 5v1t by Molmil
Crystal structure of Streptococcus suis SuiB bound to precursor peptide SuiA
分子名称: IRON/SULFUR CLUSTER, METHIONINE, Radical SAM, ...
著者Davis, K.M, Bacik, J.P, Ando, N.
登録日2017-03-02
公開日2017-08-30
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structures of the peptide-modifying radical SAM enzyme SuiB elucidate the basis of substrate recognition.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
3PT2
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BU of 3pt2 by Molmil
Structure of a viral OTU domain protease bound to Ubiquitin
分子名称: 1.7.6 3-bromanylpropan-1-amine, ACETATE ION, RNA polymerase, ...
著者James, T.W, Bacik, J.P, Frias-Staheli, N, Garcia-Sastre, A, Mark, B.L.
登録日2010-12-02
公開日2011-01-19
最終更新日2023-05-31
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural basis for the removal of ubiquitin and interferon-stimulated gene 15 by a viral ovarian tumor domain-containing protease.
Proc.Natl.Acad.Sci.USA, 108, 2011
6MT9
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BU of 6mt9 by Molmil
X-ray crystal structure of Bacillus subtilis ribonucleotide reductase NrdE alpha subunit with TTP, ATP, and ADP
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
著者Thomas, W.C, Brooks, F.P, Bacik, J.P, Ando, N.
登録日2018-10-19
公開日2019-06-19
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Convergent allostery in ribonucleotide reductase.
Nat Commun, 10, 2019
6MV9
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BU of 6mv9 by Molmil
X-ray crystal structure of Bacillus subtilis ribonucleotide reductase NrdE alpha subunit with TTP and ADP
分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Ribonucleoside-diphosphate reductase, ...
著者Thomas, W.C, Brooks, F.P, Bacik, J.P, Ando, N.
登録日2018-10-24
公開日2019-06-19
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.95 Å)
主引用文献Convergent allostery in ribonucleotide reductase.
Nat Commun, 10, 2019
6MYX
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BU of 6myx by Molmil
EM structure of Bacillus subtilis ribonucleotide reductase inhibited double-helical filament of NrdE alpha subunit with dATP
分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, Ribonucleoside-diphosphate reductase
著者Thomas, W.C, Bacik, J.P, Chen, J.Z, Ando, N.
登録日2018-11-02
公開日2019-06-19
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (6 Å)
主引用文献Convergent allostery in ribonucleotide reductase.
Nat Commun, 10, 2019
6MW3
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BU of 6mw3 by Molmil
EM structure of Bacillus subtilis ribonucleotide reductase inhibited filament composed of NrdE alpha subunit and NrdF beta subunit with dATP
分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, Ribonucleoside-diphosphate reductase, Ribonucleoside-diphosphate reductase NrdF beta subunit
著者Thomas, W.C, Bacik, J.P, Kaelber, J.T, Ando, N.
登録日2018-10-29
公開日2019-06-19
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (4.65 Å)
主引用文献Convergent allostery in ribonucleotide reductase.
Nat Commun, 10, 2019
6MVE
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BU of 6mve by Molmil
Reduced X-ray crystal structure of Bacillus subtilis ribonucleotide reductase NrdE alpha subunit with TTP, ATP, and ADP
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
著者Thomas, W.C, Brooks, F.P, Bacik, J.P, Ando, N.
登録日2018-10-25
公開日2019-06-19
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Convergent allostery in ribonucleotide reductase.
Nat Commun, 10, 2019
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