1LK5
| Structure of the D-Ribose-5-Phosphate Isomerase from Pyrococcus horikoshii | Descriptor: | CHLORIDE ION, D-Ribose-5-Phosphate Isomerase, SODIUM ION | Authors: | Ishikawa, K, Matsui, I, Payan, F, Cambillau, C, Ishida, H, Kawarabayasi, Y, Kikuchi, H, Roussel, A. | Deposit date: | 2002-04-24 | Release date: | 2002-07-03 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (1.75 Å) | Cite: | A hyperthermostable D-ribose-5-phosphate isomerase from Pyrococcus horikoshii characterization and three-dimensional structure. Structure, 10, 2002
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1LK7
| Structure of D-Ribose-5-Phosphate Isomerase from in complex with phospho-erythronic acid | Descriptor: | CHLORIDE ION, D-4-PHOSPHOERYTHRONIC ACID, D-Ribose-5-Phosphate Isomerase, ... | Authors: | Ishikawa, K, Matsui, I, Payan, F, Cambillau, C, Ishida, H, Kawarabayasi, Y, Kikuchi, H, Roussel, A. | Deposit date: | 2002-04-24 | Release date: | 2002-07-03 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | A Hyperthermostable D-Ribose-5-Phosphate Isomerase from Pyrococcus horikoshii Characterization and Three-Dimensional Structure STRUCTURE, 10, 2002
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5NF3
| The fimbrial shaft protein Mfa1 from Porphyromonas gingivalis-C-terminal deletion | Descriptor: | ACETATE ION, CALCIUM ION, Minor fimbrium subunit Mfa1 | Authors: | Hall, M, Hasegawa, Y, Persson, K, Yoshimura, F. | Deposit date: | 2017-03-13 | Release date: | 2018-02-07 | Last modified: | 2024-05-08 | Method: | X-RAY DIFFRACTION (1.97 Å) | Cite: | Structural and functional characterization of shaft, anchor, and tip proteins of the Mfa1 fimbria from the periodontal pathogen Porphyromonas gingivalis. Sci Rep, 8, 2018
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7XZZ
| Cryo-EM structure of the nucleosome in complex with p53 | Descriptor: | Cellular tumor antigen p53, DNA (169-MER), Histone H2A type 1-B/E, ... | Authors: | Nishimura, M, Nozawa, K, Takizawa, Y, Kurumizaka, H. | Deposit date: | 2022-06-03 | Release date: | 2022-10-12 | Last modified: | 2024-07-03 | Method: | ELECTRON MICROSCOPY (4.07 Å) | Cite: | Structural basis for p53 binding to its nucleosomal target DNA sequence. Pnas Nexus, 1, 2022
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7XZX
| Cryo-EM structure of the nucleosome in complex with p53 DNA-binding domain | Descriptor: | Cellular tumor antigen p53, DNA (193-MER), Histone H2A type 1-B/E, ... | Authors: | Nishimura, M, Nozawa, K, Takizawa, Y, Kurumizaka, H. | Deposit date: | 2022-06-03 | Release date: | 2022-10-12 | Last modified: | 2024-07-03 | Method: | ELECTRON MICROSCOPY (4.53 Å) | Cite: | Structural basis for p53 binding to its nucleosomal target DNA sequence. Pnas Nexus, 1, 2022
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7YOZ
| Cryo-EM structure of human subnucleosome (intermediate form) | Descriptor: | Histone H3.1, Histone H4, Widom601 DNA FW (145-MER), ... | Authors: | Nozawa, K, Takizawa, Y, Kurumizaka, H. | Deposit date: | 2022-08-02 | Release date: | 2022-11-16 | Last modified: | 2024-07-03 | Method: | ELECTRON MICROSCOPY (4.3 Å) | Cite: | Cryo-electron microscopy structure of the H3-H4 octasome: A nucleosome-like particle without histones H2A and H2B. Proc.Natl.Acad.Sci.USA, 119, 2022
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2F7L
| Crystal structure of Sulfolobus tokodaii phosphomannomutase/phosphoglucomutase | Descriptor: | 455aa long hypothetical phospho-sugar mutase, SULFATE ION | Authors: | Kawamura, T, Sakai, N, Akutsu, J, Zhang, Z, Watanabe, N, Kawarabayashi, Y, Tanaka, I. | Deposit date: | 2005-12-01 | Release date: | 2006-12-05 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.8 Å) | Cite: | Crystal structure of Sulfolobus tokodaii phosphomannomutase/phosphoglucomutase To be Published
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2CWV
| Product schiff-base intermediate of copper amine oxidase from arthrobacter globiformis | Descriptor: | COPPER (II) ION, Phenylethylamine oxidase | Authors: | Chiu, Y.C, Okajima, T, Murakawa, T, Uchida, M, Taki, M, Hirota, S, Kim, M, Yamaguchi, H, Kawano, Y, Kamiya, N, Kuroda, S, Hayashi, H, Yamamoto, Y, Tanizawa, K. | Deposit date: | 2005-06-26 | Release date: | 2006-05-02 | Last modified: | 2024-10-16 | Method: | X-RAY DIFFRACTION (1.85 Å) | Cite: | Kinetic and Structural Studies on the Catalytic Role of the Aspartic Acid Residue Conserved in Copper Amine Oxidase(,) Biochemistry, 45, 2006
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2CWU
| Substrate schiff-base intermediate of copper amine oxidase from arthrobacter globiformis | Descriptor: | COPPER (II) ION, Phenylethylamine oxidase | Authors: | Chiu, Y.C, Okajima, T, Murakawa, T, Uchida, M, Taki, M, Hirota, S, Kim, M, Yamaguchi, H, Kawano, Y, Kamiya, N, Kuroda, S, Hayashi, H, Yamamoto, Y, Tanizawa, K. | Deposit date: | 2005-06-26 | Release date: | 2006-05-02 | Last modified: | 2021-11-10 | Method: | X-RAY DIFFRACTION (1.85 Å) | Cite: | Kinetic and Structural Studies on the Catalytic Role of the Aspartic Acid Residue Conserved in Copper Amine Oxidase(,) Biochemistry, 45, 2006
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1J3U
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6JUD
| Radiation damage in Aspergillus oryzae pro-tyrosinase oxygen-bound C92A/H103F mutant | Descriptor: | COPPER (II) ION, PEROXIDE ION, Tyrosinase | Authors: | Fujieda, N, Umakoshi, K, Nishikawa, Y, Kurisu, G, Itoh, S. | Deposit date: | 2019-04-13 | Release date: | 2020-05-13 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.56 Å) | Cite: | Copper-Oxygen Dynamics in the Tyrosinase Mechanism. Angew.Chem.Int.Ed.Engl., 59, 2020
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6JU6
| Aspergillus oryzae active-tyrosinase copper-depleted C92A mutant | Descriptor: | NITRATE ION, Tyrosinase | Authors: | Fujieda, N, Umakoshi, K, Nishikawa, Y, Kurisu, G, Itoh, S. | Deposit date: | 2019-04-13 | Release date: | 2020-05-13 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | Copper-Oxygen Dynamics in the Tyrosinase Mechanism. Angew.Chem.Int.Ed.Engl., 59, 2020
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6JUC
| Aspergillus oryzae pro-tyrosinase oxygen-bound C92A/H103F mutant | Descriptor: | COPPER (II) ION, PEROXIDE ION, Tyrosinase | Authors: | Fujieda, N, Umakoshi, K, Nishikawa, Y, Kurisu, G, Itoh, S. | Deposit date: | 2019-04-13 | Release date: | 2020-05-13 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.44 Å) | Cite: | Copper-Oxygen Dynamics in the Tyrosinase Mechanism. Angew.Chem.Int.Ed.Engl., 59, 2020
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6JU5
| Aspergillus oryzae pro-tyrosinase C92A/F513Y mutant | Descriptor: | COPPER (II) ION, Tyrosinase | Authors: | Fujieda, N, Umakoshi, K, Nishikawa, Y, Kurisu, G, Itoh, S. | Deposit date: | 2019-04-13 | Release date: | 2020-05-13 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.34 Å) | Cite: | Copper-Oxygen Dynamics in the Tyrosinase Mechanism. Angew.Chem.Int.Ed.Engl., 59, 2020
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8PXK
| Structure of NADH-DEPENDENT FERREDOXIN REDUCTASE, BPHA4, solved at wavelength 5.76 A | Descriptor: | FLAVIN-ADENINE DINUCLEOTIDE, Ferredoxin reductase | Authors: | El Omari, K, Duman, R, Mykhaylyk, V, Orr, C, Senda, M, Matsugaki, N, Kawano, Y, Wagner, A. | Deposit date: | 2023-07-23 | Release date: | 2023-10-25 | Method: | X-RAY DIFFRACTION (3.77 Å) | Cite: | Experimental phasing opportunities for macromolecular crystallography at very long wavelengths. Commun Chem, 6, 2023
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8PXL
| Structure of NADH-DEPENDENT FERREDOXIN REDUCTASE, BPHA4, solved at wavelength 1.37 A | Descriptor: | FLAVIN-ADENINE DINUCLEOTIDE, FORMIC ACID, Ferredoxin reductase, ... | Authors: | El Omari, K, Duman, R, Mykhaylyk, V, Orr, C, Senda, M, Matsugaki, N, Kawano, Y, Wagner, A. | Deposit date: | 2023-07-23 | Release date: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Experimental phasing opportunities for macromolecular crystallography at very long wavelengths. Commun Chem, 6, 2023
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6JU9
| Aspergillus oryzae active-tyrosinase copper-bound C92A mutant complexed with L-tyrosine | Descriptor: | 3,4-DIHYDROXYPHENYLALANINE, COPPER (II) ION, NITRATE ION, ... | Authors: | Fujieda, N, Umakoshi, K, Nishikawa, Y, Kurisu, G, Itoh, S. | Deposit date: | 2019-04-13 | Release date: | 2020-05-13 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.42 Å) | Cite: | Copper-Oxygen Dynamics in the Tyrosinase Mechanism. Angew.Chem.Int.Ed.Engl., 59, 2020
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6JU7
| Aspergillus oryzae active-tyrosinase copper-depleted C92A mutant complexed with L-tyrosine | Descriptor: | NITRATE ION, TYROSINE, Tyrosinase | Authors: | Fujieda, N, Umakoshi, K, Nishikawa, Y, Kurisu, G, Itoh, S. | Deposit date: | 2019-04-13 | Release date: | 2020-05-13 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.42 Å) | Cite: | Copper-Oxygen Dynamics in the Tyrosinase Mechanism. Angew.Chem.Int.Ed.Engl., 59, 2020
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6JUA
| Aspergillus oryzae pro-tyrosinase oxygen-bound C92A mutant | Descriptor: | COPPER (II) ION, PEROXIDE ION, Tyrosinase | Authors: | Fujieda, N, Umakoshi, K, Nishikawa, Y, Kurisu, G, Itoh, S. | Deposit date: | 2019-04-13 | Release date: | 2020-05-13 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.45 Å) | Cite: | Copper-Oxygen Dynamics in the Tyrosinase Mechanism. Angew.Chem.Int.Ed.Engl., 59, 2020
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6JU4
| Aspergillus oryzae pro-tyrosinase F513Y mutant | Descriptor: | COPPER (II) ION, Tyrosinase | Authors: | Fujieda, N, Umakoshi, K, Nishikawa, Y, Kurisu, G, Itoh, S. | Deposit date: | 2019-04-13 | Release date: | 2020-05-13 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.35 Å) | Cite: | Copper-Oxygen Dynamics in the Tyrosinase Mechanism. Angew.Chem.Int.Ed.Engl., 59, 2020
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6JU8
| Aspergillus oryzae active-tyrosinase copper-bound C92A mutant | Descriptor: | COPPER (II) ION, NITRATE ION, Tyrosinase | Authors: | Fujieda, N, Umakoshi, K, Nishikawa, Y, Kurisu, G, Itoh, S. | Deposit date: | 2019-04-13 | Release date: | 2020-05-13 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.27 Å) | Cite: | Copper-Oxygen Dynamics in the Tyrosinase Mechanism. Angew.Chem.Int.Ed.Engl., 59, 2020
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6JUB
| Radiation damage in Aspergillus oryzae pro-tyrosinase oxygen-bound C92A mutant | Descriptor: | COPPER (II) ION, PEROXIDE ION, Tyrosinase | Authors: | Fujieda, N, Umakoshi, K, Nishikawa, Y, Kurisu, G, Itoh, S. | Deposit date: | 2019-04-13 | Release date: | 2020-05-13 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.54 Å) | Cite: | Copper-Oxygen Dynamics in the Tyrosinase Mechanism. Angew.Chem.Int.Ed.Engl., 59, 2020
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8JH3
| RNA polymerase II elongation complex containing 40 bp upstream DNA loop, stalled at SHL(-1) of the nucleosome | Descriptor: | DNA (198-MER), DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, ... | Authors: | Akatsu, M, Fujita, R, Ogasawara, M, Ehara, H, Kujirai, T, Takizawa, Y, Sekine, S, Kurumizaka, H. | Deposit date: | 2023-05-22 | Release date: | 2023-11-29 | Last modified: | 2023-12-20 | Method: | ELECTRON MICROSCOPY (3.7 Å) | Cite: | Cryo-EM structures of RNA polymerase II-nucleosome complexes rewrapping transcribed DNA. J.Biol.Chem., 299, 2023
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8JH4
| RNA polymerase II elongation complex containing 60 bp upstream DNA loop, stalled at SHL(-1) of the nucleosome | Descriptor: | DNA (198-MER), DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, ... | Authors: | Akatsu, M, Fujita, R, Ogasawara, M, Ehara, H, Kujirai, T, Takizawa, Y, Sekine, S, Kurumizaka, H. | Deposit date: | 2023-05-22 | Release date: | 2023-11-29 | Last modified: | 2023-12-20 | Method: | ELECTRON MICROSCOPY (3.2 Å) | Cite: | Cryo-EM structures of RNA polymerase II-nucleosome complexes rewrapping transcribed DNA. J.Biol.Chem., 299, 2023
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2CWT
| Catalytic base deletion in copper amine oxidase from arthrobacter globiformis | Descriptor: | COPPER (II) ION, Phenylethylamine oxidase | Authors: | Chiu, Y.C, Okajima, T, Murakawa, T, Uchida, M, Taki, M, Hirota, S, Kim, M, Yamaguchi, H, Kawano, Y, Kamiya, N, Kuroda, S, Hayashi, H, Yamamoto, Y, Tanizawa, K. | Deposit date: | 2005-06-26 | Release date: | 2006-05-02 | Last modified: | 2021-11-10 | Method: | X-RAY DIFFRACTION (1.82 Å) | Cite: | Kinetic and Structural Studies on the Catalytic Role of the Aspartic Acid Residue Conserved in Copper Amine Oxidase(,) Biochemistry, 45, 2006
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