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PDB: 347 件
3WAM
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BU of 3wam by Molmil
Crystal structure of human LC3C_8-125
分子名称: CITRIC ACID, Microtubule-associated proteins 1A/1B light chain 3C
著者Suzuki, H, Tabata, K, Morita, E, Kawasaki, M, Kato, R, Dobson, R.C.J, Yoshimori, T, Wakatsuki, S.
登録日2013-05-06
公開日2013-12-25
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Structural basis of the autophagy-related LC3/Atg13 LIR complex: recognition and interaction mechanism.
Structure, 22, 2014
3WAP
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BU of 3wap by Molmil
Crystal structure of Atg13 LIR-fused human LC3C_8-125
分子名称: Autophagy-related protein 13, Microtubule-associated proteins 1A/1B light chain 3C
著者Suzuki, H, Tabata, K, Morita, E, Kawasaki, M, Kato, R, Dobson, R.C.J, Yoshimori, T, Wakatsuki, S.
登録日2013-05-06
公開日2013-12-25
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Structural basis of the autophagy-related LC3/Atg13 LIR complex: recognition and interaction mechanism.
Structure, 22, 2014
3BIS
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BU of 3bis by Molmil
Crystal Structure of the PD-L1
分子名称: Programmed cell death 1 ligand 1
著者Lin, D.Y, Tanaka, Y, Iwasaki, M, Gittis, A.G, Su, H.P, Mikami, B, Okazaki, T, Honjo, T, Minato, N, Garboczi, D.N.
登録日2007-11-30
公開日2008-02-26
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.64 Å)
主引用文献The PD-1/PD-L1 complex resembles the antigen-binding Fv domains of antibodies and T cell receptors.
Proc.Natl.Acad.Sci.Usa, 105, 2008
3BC1
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BU of 3bc1 by Molmil
Crystal Structure of the complex Rab27a-Slp2a
分子名称: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, Ras-related protein Rab-27A, ...
著者Chavas, L.M.G, Ihara, K, Kawasaki, M, Wakatsuki, S.
登録日2007-11-12
公開日2008-09-02
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Elucidation of Rab27 recruitment by its effectors: structure of Rab27a bound to Exophilin4/Slp2-a
Structure, 16, 2008
2Z42
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BU of 2z42 by Molmil
Crystal Structure of Family 7 Alginate Lyase A1-II' from Sphingomonas sp. A1
分子名称: Alginate lyase, SULFATE ION
著者Ogura, K, Yamasaki, M, Hashimoto, W, Mikami, B, Murata, K.
登録日2007-06-12
公開日2008-05-27
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Substrate Recognition by Family 7 Alginagte Lyase from Sphingomonas sp. A1
To be published
2ZAB
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BU of 2zab by Molmil
Crystal Structure of Family 7 Alginate Lyase A1-II' Y284F in Cmplex with Product (GGG)
分子名称: Alginate lyase, GLYCEROL, alpha-L-gulopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid
著者Ogura, K, Yamasaki, M, Mikami, B, Hashimoto, W, Murata, K.
登録日2007-10-02
公開日2008-05-27
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.66 Å)
主引用文献Substrate Recognition in Tunnel of Family 7 Alginate Lyase from Sphingomonas sp. A1
To be Published
2ZGY
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BU of 2zgy by Molmil
PARM with GDP
分子名称: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Plasmid segregation protein parM
著者Popp, D, Narita, A, Oda, T, Fujisawa, T, Matsuo, H, Nitanai, Y, Iwasa, M, Maeda, K, Onishi, H, Maeda, Y.
登録日2008-01-30
公開日2008-02-12
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Molecular structure of the ParM polymer and the mechanism leading to its nucleotide-driven dynamic instability
Embo J., 27, 2008
2ZAC
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BU of 2zac by Molmil
Crystal Structure of Family 7 Alginate Lyase A1-II' Y284F in Complex with Product (MMG)
分子名称: Alginate lyase, GLYCEROL, beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid
著者Ogura, K, Yamasaki, M, Mikami, B, Hashimoto, W, Murata, K.
登録日2007-10-02
公開日2008-05-27
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Substrate Recognition in Tunnel of Family 7 Alginate Lyase from Sphingomonas sp. A1
To be Published
2ZHC
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BU of 2zhc by Molmil
ParM filament
分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Plasmid segregation protein parM
著者Popp, D, Narita, A, Oda, T, Fujisawa, T, Matsuo, H, Nitanai, Y, Iwasa, M, Maeda, K, Onishi, H, Maeda, Y.
登録日2008-02-04
公開日2008-02-26
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (23 Å)
主引用文献Molecular structure of the ParM polymer and the mechanism leading to its nucleotide-driven dynamic instability
Embo J., 27, 2008
2ZAA
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BU of 2zaa by Molmil
Crystal Structure of Family 7 Alginate Lyase A1-II' H191N/Y284F in Complex with Substrate (GGMG)
分子名称: 4-deoxy-alpha-L-erythro-hex-4-enopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid, Alginate lyase, GLYCEROL
著者Ogura, K, Yamasaki, M, Mikami, B, Hashimoto, W, Murata, K.
登録日2007-10-02
公開日2008-05-27
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Substrate Recognition in Tunnel of Family 7 Alginate Lyase from Sphingomonas sp. A1
To be Published
3A0N
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BU of 3a0n by Molmil
Crystal structure of D-glucuronic acid-bound alginate lyase vAL-1 from Chlorella virus
分子名称: VAL-1, beta-D-glucopyranuronic acid
著者Ogura, K, Yamasaki, M, Hashidume, T, Yamada, T, Mikami, B, Hashimoto, W, Murata, K.
登録日2009-03-23
公開日2009-10-20
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Crystal structure of family 14 polysaccharide lyase with pH-dependent modes of action
J.Biol.Chem., 284, 2009
2ZA9
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BU of 2za9 by Molmil
Crystal Structure of Alginate lyase A1-II' N141C/N199C
分子名称: Alginate lyase, SULFATE ION
著者Ogura, K, Yamasaki, M, Mikami, B, Hashimoto, W, Murata, K.
登録日2007-10-02
公開日2008-05-27
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Substrate Recognition in Tunnel of Family 7 Alginate Lyase from Sphingomonas sp. A1
To be Published
2Z5B
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BU of 2z5b by Molmil
Crystal Structure of a Novel Chaperone Complex for Yeast 20S Proteasome Assembly
分子名称: Protein YPL144W, Uncharacterized protein YLR021W
著者Yashiroda, H, Mizushima, T, Okamoto, K, Kameyama, T, Hayashi, H, Kishimoto, T, Kasahara, M, Kurimoto, E, Sakata, E, Suzuki, A, Hirano, Y, Murata, S, Kato, K, Yamane, T, Tanaka, K.
登録日2007-07-03
公開日2008-01-22
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.96 Å)
主引用文献Crystal structure of a chaperone complex that contributes to the assembly of yeast 20S proteasomes
Nat.Struct.Mol.Biol., 15, 2008
2Z5C
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BU of 2z5c by Molmil
Crystal Structure of a Novel Chaperone Complex for Yeast 20S Proteasome Assembly
分子名称: Proteasome component PUP2, Protein YPL144W, Uncharacterized protein YLR021W
著者Yashiroda, H, Mizushima, T, Okamoto, K, Kameyama, T, Hayashi, H, Kishimoto, T, Kasahara, M, Kurimoto, E, Sakata, E, Suzuki, A, Hirano, Y, Murata, S, Kato, K, Yamane, T, Tanaka, K.
登録日2007-07-03
公開日2008-01-22
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Crystal structure of a chaperone complex that contributes to the assembly of yeast 20S proteasomes
Nat.Struct.Mol.Biol., 15, 2008
2ZWH
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BU of 2zwh by Molmil
Model for the F-actin structure
分子名称: ADENOSINE-5'-DIPHOSPHATE, Actin, alpha skeletal muscle, ...
著者Oda, T, Iwasa, M, Aihara, T, Maeda, Y, Narita, A.
登録日2008-12-05
公開日2009-01-20
最終更新日2017-10-11
実験手法FIBER DIFFRACTION (3.3 Å)
主引用文献The nature of the globular- to fibrous-actin transition.
Nature, 457, 2009
2ZGZ
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BU of 2zgz by Molmil
PARM with GMPPNP
分子名称: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, Plasmid segregation protein parM
著者Popp, D, Narita, A, Oda, T, Fujisawa, T, Matsuo, H, Nitanai, Y, Iwasa, M, Maeda, K, Onishi, H, Maeda, Y.
登録日2008-01-30
公開日2008-02-12
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Molecular structure of the ParM polymer and the mechanism leading to its nucleotide-driven dynamic instability
Embo J., 27, 2008
3AW6
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BU of 3aw6 by Molmil
Crystal structure of tetragonal hen egg white lysozyme at 84.2% relative humidity
分子名称: ACETATE ION, CHLORIDE ION, Lysozyme C, ...
著者Takayama, Y, Nakasako, M.
登録日2011-03-11
公開日2011-03-30
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献A few low-frequency normal modes predominantly contribute to conformational responses of hen egg white lysozyme in the tetragonal crystal to variations of molecular packing controlled by environmental humidity
Biophys.Chem., 159, 2011
3AFL
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BU of 3afl by Molmil
Crystal structure of exotype alginate lyase Atu3025 H531A complexed with alginate trisaccharide
分子名称: 4-deoxy-alpha-L-erythro-hex-4-enopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid, Oligo alginate lyase
著者Ochiai, A, Yamasaki, M, Mikami, B, Hashimoto, W, Murata, K.
登録日2010-03-09
公開日2010-04-28
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.99 Å)
主引用文献Crystal structure of exotype alginate lyase Atu3025 from Agrobacterium tumefaciens
J.Biol.Chem., 285, 2010
3AW7
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BU of 3aw7 by Molmil
Crystal structure of tetragonal hen egg white lysozyme at 71.9% relative humidity
分子名称: ACETATE ION, CHLORIDE ION, Lysozyme C, ...
著者Takayama, Y, Nakasako, M.
登録日2011-03-11
公開日2011-03-30
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献A few low-frequency normal modes predominantly contribute to conformational responses of hen egg white lysozyme in the tetragonal crystal to variations of molecular packing controlled by environmental humidity
Biophys.Chem., 159, 2011
3AXC
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BU of 3axc by Molmil
Crystal structure of linear diubiquitin
分子名称: GLYCEROL, Ubiquitin
著者Rohaim, A, Kawasaki, M, Kato, R, Dikic, I, Wakatsuki, S.
登録日2011-04-01
公開日2012-01-25
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.19 Å)
主引用文献Structure of a compact conformation of linear diubiquitin
Acta Crystallogr.,Sect.D, 68, 2012
3BIK
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BU of 3bik by Molmil
Crystal Structure of the PD-1/PD-L1 Complex
分子名称: GLYCEROL, Programmed cell death 1 ligand 1, Programmed cell death protein 1
著者Lin, D.Y, Tanaka, Y, Iwasaki, M, Gittis, A.G, Su, H.P, Mikami, B, Okazaki, T, Honjo, T, Minato, N, Garboczi, D.N.
登録日2007-11-30
公開日2008-02-26
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献The PD-1/PD-L1 complex resembles the antigen-binding Fv domains of antibodies and T cell receptors.
Proc.Natl.Acad.Sci.Usa, 105, 2008
3A0O
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BU of 3a0o by Molmil
Crystal structure of alginate lyase from Agrobacterium tumefaciens C58
分子名称: CHLORIDE ION, Oligo alginate lyase
著者Ochiai, A, Yamasaki, M, Mikami, B, Hashimoto, W, Murata, K.
登録日2009-03-23
公開日2010-03-31
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.11 Å)
主引用文献Crystal structure of exotype alginate lyase Atu3025 from Agrobacterium tumefaciens
J.Biol.Chem., 285, 2010

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