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PDB: 263 results

2PI3
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BU of 2pi3 by Molmil
The crystal structure of OspA mutant
Descriptor: Outer surface protein A
Authors:Biancalana, M, Makabe, K, Terechko, V, Koide, S.
Deposit date:2007-04-12
Release date:2008-05-27
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Aromatic cluster mutations produce focal modulations of beta-sheet structure.
Protein Sci., 24, 2015
4PDT
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BU of 4pdt by Molmil
Japanese Marasmius oreades lectin
Descriptor: Mannose recognizing lectin, SULFATE ION
Authors:Noma, Y, Shimokawa, M, Maeganeku, C, Motoshima, H, Watanabe, K, Minami, Y, Yagi, F.
Deposit date:2014-04-22
Release date:2015-04-29
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:The structure of Japanese Marasmius oreades lectin at 1.40 Angstroms resolution.
To Be Published
1RY8
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BU of 1ry8 by Molmil
Prostaglandin F synthase complexed with NADPH and rutin
Descriptor: Aldo-keto reductase family 1 member C3, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, RUTIN
Authors:Komoto, J, Yamada, T, Watanabe, K, Takusagawa, F.
Deposit date:2003-12-19
Release date:2004-11-02
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Crystal structure of human prostaglandin F synthase (AKR1C3).
Biochemistry, 43, 2004
1RY0
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BU of 1ry0 by Molmil
Structure of prostaglandin F synthase with prostaglandin D2
Descriptor: Aldo-keto reductase family 1 member C3, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, PROSTAGLANDIN D2
Authors:Komoto, J, Yamada, T, Watanabe, K, Takusagawa, F.
Deposit date:2003-12-19
Release date:2004-11-02
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Crystal structure of human prostaglandin F synthase (AKR1C3).
Biochemistry, 43, 2004
7FAO
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BU of 7fao by Molmil
Top7 surface mutant K42A Q43A K46A K57S K58S, and I68R
Descriptor: MAGNESIUM ION, Top7 Surface mutant
Authors:Ito, Y, Makabe, K.
Deposit date:2021-07-07
Release date:2022-05-18
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:Surface Engineering of Top7 to Facilitate Structure Determination.
Int J Mol Sci, 23, 2022
5YS7
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BU of 5ys7 by Molmil
Crystal structure of an OspA mutant
Descriptor: Outer Surface Protein A
Authors:Takada, S, Makabe, K.
Deposit date:2017-11-13
Release date:2018-11-14
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of an OspA mutant
To Be Published
7FDD
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BU of 7fdd by Molmil
A Crystal structure of OspA mutant
Descriptor: DI(HYDROXYETHYL)ETHER, Outer surface protein A
Authors:Shiga, S, Makabe, K.
Deposit date:2021-07-16
Release date:2022-07-20
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:beta-Strand-mediated Domain-swapping in the Absence of Hydrophobic Core Repacking.
J.Mol.Biol., 436, 2024
7FJR
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BU of 7fjr by Molmil
Structure of a mutant of OspA
Descriptor: DI(HYDROXYETHYL)ETHER, Outer surface protein A
Authors:Shiga, S, Makabe, K.
Deposit date:2021-08-04
Release date:2022-08-10
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:beta-Strand-mediated Domain-swapping in the Absence of Hydrophobic Core Repacking.
J.Mol.Biol., 436, 2024
5ZRU
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BU of 5zru by Molmil
Crystal structure of Agl-KA catalytic domain
Descriptor: 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL, Alpha-1,3-glucanase, CALCIUM ION, ...
Authors:Yano, S, Makabe, K.
Deposit date:2018-04-25
Release date:2019-10-23
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.833 Å)
Cite:Crystal structure of the catalytic unit of GH 87-type alpha-1,3-glucanase Agl-KA from Bacillus circulans.
Sci Rep, 9, 2019
5Z1O
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BU of 5z1o by Molmil
Crystal structure of an OspA mutant
Descriptor: Outer Surface Protein A
Authors:Takada, S, Makabe, K.
Deposit date:2017-12-27
Release date:2019-01-02
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of an OspA mutant.
To Be Published
5IAU
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BU of 5iau by Molmil
A C69-family cysteine dipeptidase from Lactobacillus farciminis
Descriptor: 1,2-ETHANEDIOL, Dipeptidase
Authors:Kono, R, Watanabe, K.
Deposit date:2016-02-21
Release date:2017-03-01
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.781 Å)
Cite:A C69-family cysteine dipeptidase from Lactobacillus farciminis; substrate recognition mechanism and autoproteolytic mechanism in enzyme maturation
To Be Published
6AIS
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BU of 6ais by Molmil
Loop deletion mutant (deleting two residues)
Descriptor: Outer surface protein A
Authors:Shiga, S, Makabe, K.
Deposit date:2018-08-24
Release date:2019-07-03
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Domain-Swapping Design by Polyproline Rod Insertion.
Chembiochem, 20, 2019
5INX
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BU of 5inx by Molmil
A C69-family cysteine dipeptidase in complex with Met and Ala from Lactobacillus farciminis
Descriptor: ALANINE, Dipeptidase, METHIONINE
Authors:Kono, R, Watanabe, K.
Deposit date:2016-03-08
Release date:2017-03-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.681 Å)
Cite:A C69-family cysteine dipeptidase from Lactobacillus farciminis; substrate recognition mechanism and autoproteolytic mechanism in enzyme maturation
To Be Published
3W80
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BU of 3w80 by Molmil
Crystal structure of dodecamer human insulin with double C-axis length of the hexamer 2 Zn insulin cell
Descriptor: Insulin, ZINC ION
Authors:Murayoshi, M, Sasaki, K, Sakabe, N, Sakabe, K.
Deposit date:2013-03-11
Release date:2013-07-03
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure of dodecamer insulin with double C-axis length of the hexamer 2 Zn insulin celll
To be Published
3W7Y
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BU of 3w7y by Molmil
0.92A structure of 2Zn human insulin at 100K
Descriptor: Insulin, ZINC ION
Authors:Sakabe, N, Sakabe, K, Sasaki, K, Murayoshi, M.
Deposit date:2013-03-11
Release date:2013-07-03
Last modified:2018-03-07
Method:X-RAY DIFFRACTION (0.92 Å)
Cite:0.92A structure of 2Zn human insulin at 100K
To be Published
3W3E
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BU of 3w3e by Molmil
Structure of Vigna unguiculata chitinase with regulation activity of the plant cell wall
Descriptor: Cotyledoneous yieldin-like protein
Authors:Morohashi, K, Sasaki, K, Sakabe, N, Sakabe, K.
Deposit date:2012-12-20
Release date:2013-01-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Three-dimensional structure analysis of Vigna unguiculata chitinase with regulation activity of the yield threshold of cell wall
To be Published
3W3D
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BU of 3w3d by Molmil
Crystal structure of smooth muscle G actin DNase I complex
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Actin, gamma-enteric smooth muscle, ...
Authors:Sakabe, N, Sakabe, K, Sasaki, K, Kondo, H, Shimomur, M.
Deposit date:2012-12-20
Release date:2013-01-30
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Refined structure and solvent network of chicken gizzard G-actin DNase 1 complex at 1.8A resolution
Acta Crystallogr.,Sect.A, 49, 1993
3W7Z
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BU of 3w7z by Molmil
1.15A structure of human 2Zn insulin at 293K
Descriptor: Insulin, ZINC ION
Authors:Hoshikawa, N, Sasaki, K, Sakabe, N, Sakabe, K.
Deposit date:2013-03-11
Release date:2013-07-03
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:1.15A structure of human 2Zn insulin at 293K
To be Published
3VYV
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BU of 3vyv by Molmil
Crystal structure of subtilisin NAT at 1.36
Descriptor: CALCIUM ION, GLYCEROL, Subtilisin NAT
Authors:Ushijima, H, Fuchita, N, Kajiwara, T, Motoshima, H, Ueno, G, Watanabe, K.
Deposit date:2012-10-03
Release date:2013-10-09
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:Crystal structure of subtilisin NAT at 1.36
TO BE PUBLISHED
3VPZ
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BU of 3vpz by Molmil
Crystal structure of glucokinase from Antarctic psychrotroph at 1.69A
Descriptor: Glucokinase
Authors:Oda, T, Fuchita, N, Motoshima, H, Kawamoto, M, Watanabe, K.
Deposit date:2012-03-16
Release date:2013-03-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Crystal structure of glucokinase from Antarctic psychrotroph at 1.69A
To be Published
1V6C
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BU of 1v6c by Molmil
Crystal Structure of Psychrophilic Subtilisin-like Protease Apa1 from Antarctic Psychrotroph Pseudoalteromonas sp. AS-11
Descriptor: CALCIUM ION, SULFATE ION, alkaline serine protease, ...
Authors:Dong, D, Ihara, T, Motoshima, H, Watanabe, K.
Deposit date:2003-11-28
Release date:2004-12-28
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of Psychrophilic Subtilisin-like Protease Apa1 from Antarctic Psychrotroph Pseudoalteromonas sp. AS-11
To be Published
1WVM
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BU of 1wvm by Molmil
Crystal Structure of Psychrophilic Subtilisin-like Serine Protease APA1 from Antarctic Psychrotroph Pseudoaleromonas sp. AS-11, Complexed with Inhibitor Chymostatin
Descriptor: CALCIUM ION, CHYMOSTATIN, MAGNESIUM ION, ...
Authors:Dong, D, Watanabe, K.
Deposit date:2004-12-16
Release date:2006-03-21
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structure of Psychrophilic Subtilisin-like Serine Protease from Antarctic Psychrotroph Pseudoalteromonas sp. AS-11 at 0.16 nm resolution
To be Published
3EC5
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BU of 3ec5 by Molmil
The crystal structure of Thioflavin-T (ThT) binding OspA mutant
Descriptor: Outer Surface Protein A, TETRAETHYLENE GLYCOL
Authors:Biancalana, M, Makabe, K, Koide, A, Koide, S.
Deposit date:2008-08-28
Release date:2009-02-03
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Molecular mechanism of thioflavin-T binding to the surface of beta-rich peptide self-assemblies
J.Mol.Biol., 385, 2009
1V2X
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BU of 1v2x by Molmil
TrmH
Descriptor: PHOSPHATE ION, S-ADENOSYLMETHIONINE, tRNA (Gm18) methyltransferase
Authors:Nureki, O, Watanabe, K, Fukai, S, Ishii, R, Endo, Y, Hori, H, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-10-17
Release date:2004-05-04
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Deep Knot Structure for Construction of Active Site and Cofactor Binding Site of tRNA Modification Enzyme
STRUCTURE, 12, 2004
1UMK
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BU of 1umk by Molmil
The Structure of Human Erythrocyte NADH-cytochrome b5 Reductase
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, NADH-cytochrome b5 reductase
Authors:Bando, S, Takano, T, Yubisui, T, Shirabe, K, Takeshita, M, Horii, C, Nakagawa, A.
Deposit date:2003-10-03
Release date:2004-11-02
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structure of human erythrocyte NADH-cytochrome b5 reductase.
Acta Crystallogr.,Sect.D, 60, 2004

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PDB entries from 2024-08-28

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