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PDB: 263 results

3EEX
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BU of 3eex by Molmil
The crystal structure of OspA mutant
Descriptor: HEXAETHYLENE GLYCOL, Outer Surface Protein A
Authors:Makabe, K, Biancalana, M, Koide, S.
Deposit date:2008-09-06
Release date:2009-09-08
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Minimalist design of water-soluble cross-{beta} architecture.
Proc.Natl.Acad.Sci.USA, 107, 2010
6J48
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Glycine mutation on single layer beta-sheet of OspAsm1
Descriptor: Outer surface protein A, TETRAETHYLENE GLYCOL
Authors:Makabe, K, Hori, Y.
Deposit date:2019-01-08
Release date:2019-03-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.201 Å)
Cite:Grafting a short chameleon sequence from alpha B crystallin into a beta-sheet scaffold protein.
Proteins, 87, 2019
6J47
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OspA variant with a short chameleon sequence from alpha B crystallin
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Outer surface protein A, TETRAETHYLENE GLYCOL
Authors:Makabe, K, Hori, Y.
Deposit date:2019-01-08
Release date:2019-03-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Grafting a short chameleon sequence from alpha B crystallin into a beta-sheet scaffold protein.
Proteins, 87, 2019
6J49
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Grafting VLADV sequence into OspAsm1
Descriptor: Outer surface protein A, TETRAETHYLENE GLYCOL
Authors:Makabe, K, Hori, Y.
Deposit date:2019-01-08
Release date:2019-03-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Grafting a short chameleon sequence from alpha B crystallin into a beta-sheet scaffold protein.
Proteins, 87, 2019
1J1R
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BU of 1j1r by Molmil
Structure of Pokeweed Antiviral Protein from Seeds (PAP-S1) Complexed with Adenine
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ADENINE, Antiviral Protein S
Authors:Watanabe, K, Sato, E, Honjo, E, Motoshima, H, Kurokawa, H, Mikami, B, Monzingo, A.F, Robertus, J.D, Fujii, H, Hidaka, A.
Deposit date:2002-12-14
Release date:2004-02-03
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structure of Pokweed Antiviral Protein from Seeds (PAP-S1) at 1.8 Angstrom Resolution
To be published
1GP9
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A New Crystal Form of the Nk1 Splice Variant of Hgf/Sf Demonstrates Extensive Hinge Movement and Suggests that the Nk1 Dimer Originates by Domain Swapping
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, HEPATOCYTE GROWTH FACTOR
Authors:Watanabe, K, Chirgadze, D.Y, Lietha, D, Gherardi, E, Blundell, T.L.
Deposit date:2001-10-31
Release date:2001-11-19
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A New Crystal Form of the Nk1 Splice Variant of Hgf/Sf Demonstrates Extensive Hinge Movement and Suggests that the Nk1 Dimer Originates by Domain Swapping
J.Mol.Biol., 319, 2002
1J1M
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Ricin A-Chain (Recombinant) at 100K
Descriptor: Ricin, SULFATE ION, alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose
Authors:Watanabe, K, Motoshima, H.
Deposit date:2002-12-10
Release date:2004-02-03
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Ricin A-Chain (Recombinant) at 100K
To be published
1J1Q
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Structure of Pokeweed Antiviral Protein from Seeds (PAP-S1)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Antiviral protein S
Authors:Watanabe, K, Sato, E, Honjo, E, Motoshima, H, Kurokawa, H, Mikami, B, Monzingo, A.F, Robertus, J.D, Fujii, H, Hidaka, A.
Deposit date:2002-12-14
Release date:2004-02-03
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of Pokweed Antiviral Protein from Seeds (PAP-S1) at 1.8 Angstrom Resolution
To be published
1J1S
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Pokeweed Antiviral Protein from Seeds (PAP-S1) Complexed with Formycin
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Antiviral Protein S, FORMYCIN-5'-MONOPHOSPHATE
Authors:Watanabe, K, Sato, E, Honjo, E, Motoshima, H, Kurokawa, H, Mikami, B, Monzingo, A.F, Robertus, J.D, Fujii, H, Hidaka, A.
Deposit date:2002-12-14
Release date:2004-02-03
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of Pokweed Antiviral Protein from Seeds (PAP-S1) at 1.8 Angstrom Resolution
To be published
1UOK
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CRYSTAL STRUCTURE OF B. CEREUS OLIGO-1,6-GLUCOSIDASE
Descriptor: OLIGO-1,6-GLUCOSIDASE
Authors:Watanabe, K, Hata, Y, Kizaki, H, Katsube, Y, Suzuki, Y.
Deposit date:1998-07-28
Release date:1999-02-16
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:The refined crystal structure of Bacillus cereus oligo-1,6-glucosidase at 2.0 A resolution: structural characterization of proline-substitution sites for protein thermostabilization.
J.Mol.Biol., 269, 1997
1V6A
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Crystal Structure of L-lactate dehydrogenase from Cyprinus carpio
Descriptor: L-lactate dehydrogenase A chain, alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose
Authors:Watanabe, K, Motoshima, H.
Deposit date:2003-11-28
Release date:2005-02-15
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structure of L-lactate dehydrogenase from Cyprinus carpio
To be Published
7X2B
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Red fluorescent protein from Diadumene lineata
Descriptor: Red fluorescent protein, SULFATE ION
Authors:Makabe, K, Hotta, J, Mizuno, H.
Deposit date:2022-02-25
Release date:2023-03-01
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Cloning and structural basis of fluorescent protein color variants from identical species of sea anemone, Diadumene lineata.
Photochem Photobiol Sci, 22, 2023
3VQU
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CRYSTAL STRUCTURE OF HUMAN MPS1 CATALYTIC DOMAIN IN COMPLEX WITH 4-[(4-amino-5-cyano-6-ethoxypyridin-2- yl)amino]benzamide
Descriptor: 4-[(4-amino-5-cyano-6-ethoxypyridin-2-yl)amino]benzamide, Dual specificity protein kinase TTK, IODIDE ION
Authors:Kusakabe, K, Ide, N, Daigo, Y, Itoh, T, Higashino, K, Okano, Y, Tadano, G, Tachibana, Y, Sato, Y, Inoue, M, Wada, T, Iguchi, M, Kanazawa, T, Ishioka, Y, Dohi, K, Tagashira, S, Kido, Y, Sakamoto, S, Yasuo, K, Maeda, M, Yamamoto, T, Higaki, M, Endoh, T, Ueda, K, Shiota, T, Murai, H, Nakamura, Y.
Deposit date:2012-03-30
Release date:2012-06-27
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Diaminopyridine-based potent and selective mps1 kinase inhibitors binding to an unusual flipped-Peptide conformation.
Acs Med.Chem.Lett., 3, 2012
3W1F
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Crystal structure of Human MPS1 catalytic domain in complex with 5-(5-ethoxy-6-(1-methyl-1H-pyrazol-4-yl)-1H-indazol-3-yl)-2-methylbenzenesulfonamide
Descriptor: 5-[5-ethoxy-6-(1-methyl-1H-pyrazol-4-yl)-1H-indazol-3-yl]-2-methylbenzenesulfonamide, Dual specificity protein kinase TTK
Authors:Kusakabe, K, Ide, N, Daigo, Y, Tachibana, Y, Itoh, T, Yamamoto, T, Hashizume, H, Hato, Y, Higashino, K, Okano, Y, Sato, Y, Inoue, M, Iguchi, M, Kanazawa, T, Ishioka, Y, Dohi, K, Kido, Y, Sakamoto, S, Yasuo, K, Maeda, M, Higaki, M, Ueda, K, Yoshizawa, H, Baba, Y, Shiota, T, Murai, H, Nakamura, Y.
Deposit date:2012-11-14
Release date:2013-06-26
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Indazole-based potent and cell-active Mps1 kinase inhibitors: rational design from pan-kinase inhibitor anthrapyrazolone (SP600125)
J.Med.Chem., 56, 2013
3S96
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Crystal structure of 3B5H10
Descriptor: 3B5H10 FAB heavy chain, 3B5H10 FAB light chain
Authors:Weisgraber, K, Peters-Libeu, C, Rutenber, E, Newhouse, Y, Finkbeiner, S.
Deposit date:2011-05-31
Release date:2012-02-15
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Disease-associated polyglutamine stretches in monomeric huntingtin adopt a compact structure.
J.Mol.Biol., 421, 2012
2OL7
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BU of 2ol7 by Molmil
The crystal structure of OspA mutant
Descriptor: Outer surface protein A
Authors:Makabe, K, Terechko, V, Koide, S.
Deposit date:2007-01-18
Release date:2007-12-11
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:beta-Strand Flipping and Slipping Triggered by Turn Replacement Reveal the Opportunistic Nature of beta-Strand Pairing
J.Am.Chem.Soc., 129, 2007
2OL6
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BU of 2ol6 by Molmil
The crystal structure of OspA mutant
Descriptor: Outer surface protein A
Authors:Makabe, K, Terechko, V, Koide, S.
Deposit date:2007-01-18
Release date:2007-12-11
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:beta-Strand Flipping and Slipping Triggered by Turn Replacement Reveal the Opportunistic Nature of beta-Strand Pairing
J.Am.Chem.Soc., 129, 2007
2FKG
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BU of 2fkg by Molmil
The Crystal Structure of Engineered OspA
Descriptor: Outer Surface Protein A
Authors:Makabe, K, Terechko, V, Gawlak, G, Yan, S, Koide, S.
Deposit date:2006-01-04
Release date:2006-11-21
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Atomic structures of peptide self-assembly mimics.
Proc.Natl.Acad.Sci.Usa, 103, 2006
2G8C
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Atomic-resolution crystal structure of Borrelia burgdorferi OspA via surface entropy reduction
Descriptor: IMIDAZOLE, TETRAETHYLENE GLYCOL, outer surface protein A
Authors:Makabe, K, Tereshko, V, Koide, S.
Deposit date:2006-03-02
Release date:2006-08-08
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Atomic-resolution crystal structure of Borrelia burgdorferi outer surface protein A via surface engineering.
Protein Sci., 15, 2006
2HKD
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BU of 2hkd by Molmil
The crystal structure of engineered OSPA
Descriptor: Outer Surface Protein A, TETRAETHYLENE GLYCOL
Authors:Makabe, K, Terechko, V, Koide, S.
Deposit date:2006-07-03
Release date:2006-11-21
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Atomic structures of peptide self-assembly mimics.
Proc.Natl.Acad.Sci.Usa, 103, 2006
2FKJ
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BU of 2fkj by Molmil
The crystal structure of engineered OspA
Descriptor: Outer Surface Protein A
Authors:Makabe, K, Terechko, V, Gawlak, G, Yan, S, Koide, S.
Deposit date:2006-01-04
Release date:2006-11-21
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Atomic structures of peptide self-assembly mimics.
Proc.Natl.Acad.Sci.Usa, 103, 2006
2I5V
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BU of 2i5v by Molmil
Crystal structure of OspA mutant
Descriptor: Outer surface protein A, TETRAETHYLENE GLYCOL
Authors:Makabe, K, Terechko, V, Koide, S.
Deposit date:2006-08-25
Release date:2007-12-25
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:High-Resolution Structure of a Self-Assembly-Competent Form of a Hydrophobic Peptide Captured in a Soluble β-Sheet Scaffold.
J.Mol.Biol., 378, 2008
2I5Z
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BU of 2i5z by Molmil
The crystal structure of OspA mutant
Descriptor: Outer surface protein A, TETRAETHYLENE GLYCOL
Authors:Makabe, K, Terechko, V, Koide, S.
Deposit date:2006-08-26
Release date:2007-07-10
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Hydrophobic surface burial is the major stability determinant of a flat, single-layer beta-sheet.
J.Mol.Biol., 368, 2007
1EQK
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BU of 1eqk by Molmil
SOLUTION STRUCTURE OF ORYZACYSTATIN-I, A CYSTEINE PROTEINASE INHIBITOR OF THE RICE, ORYZA SATIVA L. JAPONICA
Descriptor: ORYZACYSTATIN-I
Authors:Nagata, K, Kudo, N, Abe, K, Arai, S, Tanokura, M.
Deposit date:2000-04-05
Release date:2001-01-10
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Three-dimensional solution structure of oryzacystatin-I, a cysteine proteinase inhibitor of the rice, Oryza sativa L. japonica.
Biochemistry, 39, 2000
5XXL
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Crystal structure of GH3 beta-glucosidase from Bacteroides thetaiotaomicron
Descriptor: DI(HYDROXYETHYL)ETHER, MAGNESIUM ION, Periplasmic beta-glucosidase, ...
Authors:Nakajima, M, Ishiguro, R, Tanaka, N, Abe, K, Maeda, T, Miyanaga, A, Takahash, Y, Sugimoto, N, Nakai, H, Taguchi, H.
Deposit date:2017-07-04
Release date:2017-12-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Function and structure relationships of a beta-1,2-glucooligosaccharide-degrading beta-glucosidase.
FEBS Lett., 591, 2017

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数据于2024-11-06公开中

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