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PDB: 263 件
2G8C
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BU of 2g8c by Molmil
Atomic-resolution crystal structure of Borrelia burgdorferi OspA via surface entropy reduction
分子名称: IMIDAZOLE, TETRAETHYLENE GLYCOL, outer surface protein A
著者Makabe, K, Tereshko, V, Koide, S.
登録日2006-03-02
公開日2006-08-08
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.15 Å)
主引用文献Atomic-resolution crystal structure of Borrelia burgdorferi outer surface protein A via surface engineering.
Protein Sci., 15, 2006
2I5V
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BU of 2i5v by Molmil
Crystal structure of OspA mutant
分子名称: Outer surface protein A, TETRAETHYLENE GLYCOL
著者Makabe, K, Terechko, V, Koide, S.
登録日2006-08-25
公開日2007-12-25
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献High-Resolution Structure of a Self-Assembly-Competent Form of a Hydrophobic Peptide Captured in a Soluble β-Sheet Scaffold.
J.Mol.Biol., 378, 2008
1DG1
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BU of 1dg1 by Molmil
WHOLE, UNMODIFIED, EF-TU(ELONGATION FACTOR TU).
分子名称: ELONGATION FACTOR TU, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION
著者Abel, K, Yoder, M, Hilgenfeld, R, Jurnak, F.
登録日1999-11-22
公開日1999-12-01
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献An alpha to beta conformational switch in EF-Tu.
Structure, 4, 1996
8HMM
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BU of 8hmm by Molmil
Crystal structure of AoRhaA
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Bac_rhamnosid6H domain-containing protein
著者Makabe, K, Koseki, T.
登録日2022-12-05
公開日2023-12-06
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Aspergillus oryzae alpha-l-rhamnosidase: Crystal structure and insight into the substrate specificity.
Proteins, 92, 2024
3EEX
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BU of 3eex by Molmil
The crystal structure of OspA mutant
分子名称: HEXAETHYLENE GLYCOL, Outer Surface Protein A
著者Makabe, K, Biancalana, M, Koide, S.
登録日2008-09-06
公開日2009-09-08
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.49 Å)
主引用文献Minimalist design of water-soluble cross-{beta} architecture.
Proc.Natl.Acad.Sci.USA, 107, 2010
3CKA
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BU of 3cka by Molmil
The crystal structure of OspA mutant
分子名称: Outer surface protein A, PENTAETHYLENE GLYCOL
著者Makabe, K, Biancalana, M, Terechko, V, Koide, S.
登録日2008-03-14
公開日2009-03-17
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Minimalist design of water-soluble cross-{beta} architecture.
Proc.Natl.Acad.Sci.USA, 107, 2010
3CH8
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BU of 3ch8 by Molmil
The crystal structure of PDZ-Fibronectin fusion protein
分子名称: C-terminal octapeptide from protein ARVCF, MAGNESIUM ION, fusion protein PDZ-Fibronectin,Fibronectin
著者Makabe, K, Huang, J, Koide, A, Koide, S.
登録日2008-03-08
公開日2009-03-31
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural basis for exquisite specificity of affinity clamps, synthetic binding proteins generated through directed domain-interface evolution.
J.Mol.Biol., 392, 2009
3CKF
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BU of 3ckf by Molmil
The crystal structure of OspA deletion mutant
分子名称: Outer surface protein A
著者Makabe, K, Koide, S.
登録日2008-03-14
公開日2009-01-27
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献The promiscuity of beta-strand pairing allows for rational design of beta-sheet face inversion
J.Am.Chem.Soc., 130, 2008
3CKG
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BU of 3ckg by Molmil
The crystal structure of OspA deletion mutant
分子名称: MAGNESIUM ION, Outer surface protein A
著者Makabe, K, Koide, S.
登録日2008-03-14
公開日2009-01-27
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献The promiscuity of beta-strand pairing allows for rational design of beta-sheet face inversion
J.Am.Chem.Soc., 130, 2008
5AYP
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BU of 5ayp by Molmil
Crystal structure of Bacillus stearothermophilus Farnesyl pyrophosphate synthase
分子名称: Farnesyl diphosphate synthase
著者Makabe, K, Kijima, T.
登録日2015-08-26
公開日2016-09-14
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.31 Å)
主引用文献Crystal structure of Bacillus stearothermophilus Farnesyl pyrophosphate synthase
To Be Published
1J1R
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BU of 1j1r by Molmil
Structure of Pokeweed Antiviral Protein from Seeds (PAP-S1) Complexed with Adenine
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, ADENINE, Antiviral Protein S
著者Watanabe, K, Sato, E, Honjo, E, Motoshima, H, Kurokawa, H, Mikami, B, Monzingo, A.F, Robertus, J.D, Fujii, H, Hidaka, A.
登録日2002-12-14
公開日2004-02-03
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal Structure of Pokweed Antiviral Protein from Seeds (PAP-S1) at 1.8 Angstrom Resolution
To be published
1J1Q
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Structure of Pokeweed Antiviral Protein from Seeds (PAP-S1)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Antiviral protein S
著者Watanabe, K, Sato, E, Honjo, E, Motoshima, H, Kurokawa, H, Mikami, B, Monzingo, A.F, Robertus, J.D, Fujii, H, Hidaka, A.
登録日2002-12-14
公開日2004-02-03
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal Structure of Pokweed Antiviral Protein from Seeds (PAP-S1) at 1.8 Angstrom Resolution
To be published
1J1M
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BU of 1j1m by Molmil
Ricin A-Chain (Recombinant) at 100K
分子名称: Ricin, SULFATE ION, alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose
著者Watanabe, K, Motoshima, H.
登録日2002-12-10
公開日2004-02-03
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Ricin A-Chain (Recombinant) at 100K
To be published
1GP9
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BU of 1gp9 by Molmil
A New Crystal Form of the Nk1 Splice Variant of Hgf/Sf Demonstrates Extensive Hinge Movement and Suggests that the Nk1 Dimer Originates by Domain Swapping
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, HEPATOCYTE GROWTH FACTOR
著者Watanabe, K, Chirgadze, D.Y, Lietha, D, Gherardi, E, Blundell, T.L.
登録日2001-10-31
公開日2001-11-19
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献A New Crystal Form of the Nk1 Splice Variant of Hgf/Sf Demonstrates Extensive Hinge Movement and Suggests that the Nk1 Dimer Originates by Domain Swapping
J.Mol.Biol., 319, 2002
1R2J
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BU of 1r2j by Molmil
FkbI for Biosynthesis of Methoxymalonyl Extender Unit of Fk520 Polyketide Immunosuppresant
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, protein FkbI
著者Watanabe, K, Khosla, C, Stroud, R.M, Tsai, S.-C.
登録日2003-09-28
公開日2003-11-25
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal Structure of an Acyl-ACP Dehydrogenase from the FK520 Polyketide Biosynthetic Pathway: Insights into Extender Unit Biosynthesis
J.Mol.Biol., 334, 2003
1J1S
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BU of 1j1s by Molmil
Pokeweed Antiviral Protein from Seeds (PAP-S1) Complexed with Formycin
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Antiviral Protein S, FORMYCIN-5'-MONOPHOSPHATE
著者Watanabe, K, Sato, E, Honjo, E, Motoshima, H, Kurokawa, H, Mikami, B, Monzingo, A.F, Robertus, J.D, Fujii, H, Hidaka, A.
登録日2002-12-14
公開日2004-02-03
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal Structure of Pokweed Antiviral Protein from Seeds (PAP-S1) at 1.8 Angstrom Resolution
To be published
1V6A
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BU of 1v6a by Molmil
Crystal Structure of L-lactate dehydrogenase from Cyprinus carpio
分子名称: L-lactate dehydrogenase A chain, alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose
著者Watanabe, K, Motoshima, H.
登録日2003-11-28
公開日2005-02-15
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal Structure of L-lactate dehydrogenase from Cyprinus carpio
To be Published
1UOK
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BU of 1uok by Molmil
CRYSTAL STRUCTURE OF B. CEREUS OLIGO-1,6-GLUCOSIDASE
分子名称: OLIGO-1,6-GLUCOSIDASE
著者Watanabe, K, Hata, Y, Kizaki, H, Katsube, Y, Suzuki, Y.
登録日1998-07-28
公開日1999-02-16
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献The refined crystal structure of Bacillus cereus oligo-1,6-glucosidase at 2.0 A resolution: structural characterization of proline-substitution sites for protein thermostabilization.
J.Mol.Biol., 269, 1997
3S96
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BU of 3s96 by Molmil
Crystal structure of 3B5H10
分子名称: 3B5H10 FAB heavy chain, 3B5H10 FAB light chain
著者Weisgraber, K, Peters-Libeu, C, Rutenber, E, Newhouse, Y, Finkbeiner, S.
登録日2011-05-31
公開日2012-02-15
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Disease-associated polyglutamine stretches in monomeric huntingtin adopt a compact structure.
J.Mol.Biol., 421, 2012
2Z3M
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BU of 2z3m by Molmil
complex structure of LF-transferase and dAF
分子名称: (2R,3S,5R)-5-(6-amino-9H-purin-9-yl)-tetrahydro-2-(hydroxymethyl)furan-3-ol, D(-)-TARTARIC ACID, Leucyl/phenylalanyl-tRNA-protein transferase, ...
著者Watanabe, K, Toh, Y, Tomita, K.
登録日2007-06-04
公開日2007-10-23
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Protein-based peptide-bond formation by aminoacyl-tRNA protein transferase
Nature, 449, 2007
2Z3L
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BU of 2z3l by Molmil
complex structure of LF-transferase and peptide A
分子名称: D(-)-TARTARIC ACID, Leucyl/phenylalanyl-tRNA-protein transferase, peptide (PHE)(ARG)(TYR)(LEU)(GLY)
著者Watanabe, K, Toh, Y, Tomita, K.
登録日2007-06-04
公開日2007-10-23
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献Protein-based peptide-bond formation by aminoacyl-tRNA protein transferase
Nature, 449, 2007
2Z3P
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BU of 2z3p by Molmil
complex structure of LF-transferase and leucine
分子名称: D(-)-TARTARIC ACID, LEUCINE, Leucyl/phenylalanyl-tRNA-protein transferase
著者Watanabe, K, Toh, Y, Tomita, K.
登録日2007-06-04
公開日2007-10-23
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Protein-based peptide-bond formation by aminoacyl-tRNA protein transferase
Nature, 449, 2007
2Z3O
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BU of 2z3o by Molmil
complex structure of LF-transferase and phenylalanine
分子名称: D(-)-TARTARIC ACID, Leucyl/phenylalanyl-tRNA-protein transferase, PHENYLALANINE
著者Watanabe, K, Toh, Y, Tomita, K.
登録日2007-06-04
公開日2007-10-23
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Protein-based peptide-bond formation by aminoacyl-tRNA protein transferase
Nature, 449, 2007
2Z3N
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BU of 2z3n by Molmil
complex structure of LF-transferase and peptide B
分子名称: D(-)-TARTARIC ACID, Leucyl/phenylalanyl-tRNA-protein transferase, peptide (PHE)(ARG)(TYR)(LEU)(GLY)
著者Watanabe, K, Toh, Y, Tomita, K.
登録日2007-06-04
公開日2007-10-23
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Protein-based peptide-bond formation by aminoacyl-tRNA protein transferase
Nature, 449, 2007
2Z3K
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complex structure of LF-transferase and rAF
分子名称: 2-(6-AMINO-OCTAHYDRO-PURIN-9-YL)-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3,4-DIOL, D(-)-TARTARIC ACID, Leucyl/phenylalanyl-tRNA-protein transferase, ...
著者Watanabe, K, Toh, Y, Tomita, K.
登録日2007-06-04
公開日2007-10-23
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献Protein-based peptide-bond formation by aminoacyl-tRNA protein transferase
Nature, 449, 2007

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