Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 89472 results

5Z7Z
DownloadVisualize
BU of 5z7z by Molmil
Crystal structure of Striga hermonthica Dwarf14 (ShD14)
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, Dwarf 14, ...
Authors:Xu, Y, Miyakawa, T, Nakamura, A, Tanokura, M.
Deposit date:2018-01-30
Release date:2018-08-29
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.978 Å)
Cite:Structural analysis of HTL and D14 proteins reveals the basis for ligand selectivity in Striga.
Nat Commun, 9, 2018
4JNX
DownloadVisualize
BU of 4jnx by Molmil
Crystal structure of RNA silencing suppressor p19 complexed with double-helical RNA 20mer pG(CUG)6C
Descriptor: 5'-R(P*GP*CP*UP*GP*CP*UP*GP*CP*UP*GP*CP*UP*GP*CP*UP*GP*CP*UP*GP*C)-3', MAGNESIUM ION, RNA silencing suppressor p19, ...
Authors:Katorcha, E, Popov, A.N, Malinina, L.
Deposit date:2013-03-16
Release date:2014-03-19
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Procrustean bed of RNA silencing suppression
To be Published
6D1A
DownloadVisualize
BU of 6d1a by Molmil
Crystal structure of NDM-1 complexed with compound 1
Descriptor: ACETATE ION, Metallo-beta-lactamase type 2, ZINC ION, ...
Authors:Pemberton, O.A, Chen, Y.
Deposit date:2018-04-11
Release date:2019-04-17
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Heteroaryl Phosphonates as Noncovalent Inhibitors of Both Serine- and Metallocarbapenemases.
J.Med.Chem., 62, 2019
5LAF
DownloadVisualize
BU of 5laf by Molmil
Room temperature X-ray diffraction of tetragonal HEWL with 1M of uridine. First data set (0.31 MGy)
Descriptor: ACETATE ION, CHLORIDE ION, Lysozyme C
Authors:Castellvi, A, Juanhuix, J.
Deposit date:2016-06-14
Release date:2016-12-21
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Uridine as a new scavenger for synchrotron-based structural biology techniques.
J Synchrotron Radiat, 24, 2017
8VQ1
DownloadVisualize
BU of 8vq1 by Molmil
Pseudomonas fluorescens G150T isocyanide hydratase at 298 K XFEL data, thioimidate intermediate
Descriptor: CHLORIDE ION, Isonitrile hydratase InhA, N-(4-nitrophenyl)methanimine
Authors:Wilson, M.A, Smith, N, Dasgupta, M, Dolamore, C.
Deposit date:2024-01-17
Release date:2024-02-21
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Changes in an enzyme ensemble during catalysis observed by high-resolution XFEL crystallography.
Sci Adv, 10, 2024
5AHN
DownloadVisualize
BU of 5ahn by Molmil
IMP-bound form of the D199N mutant of IMPDH from Pseudomonas aeruginosa
Descriptor: INOSINE-5'-MONOPHOSPHATE DEHYDROGENASE, INOSINIC ACID, MAGNESIUM ION
Authors:Labesse, G, Alexandre, T, Gelin, M, Haouz, A, Munier-Lehmann, H.
Deposit date:2015-02-06
Release date:2015-07-15
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.652 Å)
Cite:Crystallographic Studies of Two Variants of Pseudomonas Aeruginosa Impdh with Impaired Allosteric Regulation
Acta Crystallogr.,Sect.D, 71, 2015
5LAL
DownloadVisualize
BU of 5lal by Molmil
Structure of Arabidopsis dirigent protein AtDIR6
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Dirigent protein 6, ...
Authors:Gasper, R, Kolesinski, P, Terlecka, B, Effenberger, I, Schaller, A, Hofmann, E.
Deposit date:2016-06-14
Release date:2016-11-09
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Dirigent Protein Mode of Action Revealed by the Crystal Structure of AtDIR6.
Plant Physiol., 172, 2016
7BRY
DownloadVisualize
BU of 7bry by Molmil
Bovine Pancreatic Trypsin with 6-Methoxytryptamine (Room Temperature)
Descriptor: 2-(6-methoxy-1H-indol-3-yl)ethanamine, CALCIUM ION, Cationic trypsin, ...
Authors:Maeki, M, Ito, S, Takeda, R, Funakubo, T, Ueno, G, Ishida, A, Tani, H, Yamamoto, M, Tokeshi, M.
Deposit date:2020-03-30
Release date:2020-08-26
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Room-temperature crystallography using a microfluidic protein crystal array device and its application to protein-ligand complex structure analysis.
Chem Sci, 11, 2020
5UMC
DownloadVisualize
BU of 5umc by Molmil
Synthesis of novel seleno ureido containing compounds as SLC-0111 analogs. Investigations on carbonic anhydrases activity, glutathione peroxidase and X-ray crystallography
Descriptor: Carbonic anhydrase 2, GLYCEROL, UNKNOWN LIGAND, ...
Authors:Peat, T.S, Angeli, A, Tanini, D, Bartolucci, G, Capperucci, A, Supuran, C.T, Carta, F.
Deposit date:2017-01-26
Release date:2017-12-06
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Discovery of New Selenoureido Analogues of 4-(4-Fluorophenylureido)benzenesulfonamide as Carbonic Anhydrase Inhibitors.
ACS Med Chem Lett, 8, 2017
5A1U
DownloadVisualize
BU of 5a1u by Molmil
The structure of the COPI coat triad
Descriptor: ADP-RIBOSYLATION FACTOR 1, COATOMER SUBUNIT ALPHA, COATOMER SUBUNIT BETA, ...
Authors:Dodonova, S.O, Diestelkoetter-Bachert, P, von Appen, A, Hagen, W.J.H, Beck, R, Beck, M, Wieland, F, Briggs, J.A.G.
Deposit date:2015-05-06
Release date:2015-07-08
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (13 Å)
Cite:Vesicular Transport. A Structure of the Copi Coat and the Role of Coat Proteins in Membrane Vesicle Assembly.
Science, 349, 2015
6MR2
DownloadVisualize
BU of 6mr2 by Molmil
E. coli cysteine desulfurase SufS with a cysteine persulfide intermediate
Descriptor: Cysteine desulfurase, PYRIDOXAL-5'-PHOSPHATE
Authors:Dunkle, J.A, Frantom, P.A.
Deposit date:2018-10-11
Release date:2019-01-09
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.404 Å)
Cite:Structural Evidence for Dimer-Interface-Driven Regulation of the Type II Cysteine Desulfurase, SufS.
Biochemistry, 58, 2019
6HWY
DownloadVisualize
BU of 6hwy by Molmil
Mature MLV capsid pentamer structure in intact virus particles
Descriptor: Putative gag polyprotein
Authors:Qu, K, Glass, B, Dolezal, M, Schur, F.K.M, Rein, A, Rumlova, M, Ruml, T, Kraeusslich, H.G, Briggs, J.A.G.
Deposit date:2018-10-15
Release date:2018-12-05
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (8.6 Å)
Cite:Structure and architecture of immature and mature murine leukemia virus capsids.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5A1J
DownloadVisualize
BU of 5a1j by Molmil
Periplasmic Binding Protein CeuE in complex with ferric 4-LICAM
Descriptor: ENTEROCHELIN UPTAKE PERIPLASMIC BINDING PROTEIN, FE (III) ION, N,N'-butane-1,4-diylbis(2,3-dihydroxybenzamide)
Authors:Raines, D.J, Moroz, O.V, Wilson, K.S, Duhme-Klair, A.K.
Deposit date:2015-04-30
Release date:2015-05-13
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Interactions of a Periplasmic Binding Protein with a Tetradentate Siderophore Mimic.
Angew.Chem.Int.Ed.Engl., 52, 2013
5QOO
DownloadVisualize
BU of 5qoo by Molmil
PanDDA analysis group deposition -- Crystal Structure of DCP2 (NUDT20) in complex with FMOPL000144a
Descriptor: 1,2-ETHANEDIOL, 2-methyl-N-{5-[(2S)-oxolan-2-yl]-1,3,4-thiadiazol-2(3H)-ylidene}propanamide, ACETATE ION, ...
Authors:Nelson, E.R, Velupillai, S, Talon, R, Collins, P.M, Krojer, T, Wang, D, Brandao-Neto, J, Douangamath, A, Burgess-Brown, N, Arrowsmith, C.H, Bountra, C, Huber, K, von Delft, F.
Deposit date:2019-02-22
Release date:2019-05-08
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:PanDDA analysis group deposition
To Be Published
5HPG
DownloadVisualize
BU of 5hpg by Molmil
STRUCTURE AND LIGAND DETERMINANTS OF THE RECOMBINANT KRINGLE 5 DOMAIN OF HUMAN PLASMINOGEN
Descriptor: PLASMINOGEN
Authors:Tulinsky, A, Mochalkin, I, Castellino, F.J.
Deposit date:1997-09-19
Release date:1998-03-25
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Structure and ligand binding determinants of the recombinant kringle 5 domain of human plasminogen.
Biochemistry, 37, 1998
5QOU
DownloadVisualize
BU of 5qou by Molmil
PanDDA analysis group deposition -- Crystal Structure of DCP2 (NUDT20) in complex with Z296300542
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, DCP2 (NUDT20), ...
Authors:Nelson, E.R, Velupillai, S, Talon, R, Collins, P.M, Krojer, T, Wang, D, Brandao-Neto, J, Douangamath, A, Burgess-Brown, N, Arrowsmith, C.H, Bountra, C, Huber, K, von Delft, F.
Deposit date:2019-02-22
Release date:2019-05-08
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:PanDDA analysis group deposition
To Be Published
5A5L
DownloadVisualize
BU of 5a5l by Molmil
Structure of dual function FBPase SBPase from Thermosynechococcus elongatus
Descriptor: 7-O-phosphono-alpha-L-galacto-hept-2-ulopyranose, D-FRUCTOSE 1,6-BISPHOSPHATASE CLASS 2/SEDOHEPTULOSE 1,7-BISPHOSPHATASE, MAGNESIUM ION, ...
Authors:Cotton, C.A.R, Kabasakal, B, Miah, N, Murray, J.W.
Deposit date:2015-06-19
Release date:2015-10-14
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.34 Å)
Cite:Structure of the Dual-Function Fructose-1,6/Sedoheptulose-1, 7-Bisphosphatase from Thermosynechococcus Elongatus Bound with Sedoheptulose-7-Phosphate.
Acta Crystallogr.,Sect.F, 71, 2015
6CUN
DownloadVisualize
BU of 6cun by Molmil
Engineered Cytochrome c from Rhodothermus marinus (Rma TDE) bound to carbene intermediate (1-ethoxy-1-oxopropan-2-ylidene)
Descriptor: Cytochrome c, ETHYL PROPIONATE, HEME C
Authors:Lewis, R.D, Buller, A.R, Arnold, F.H.
Deposit date:2018-03-26
Release date:2018-06-27
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.29 Å)
Cite:Catalytic iron-carbene intermediate revealed in a cytochromeccarbene transferase.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6TGN
DownloadVisualize
BU of 6tgn by Molmil
Cryo-EM structure of AtNBR1-PB1 filament (L-type)
Descriptor: Protein NBR1 homolog
Authors:Jakobi, A.J, Sachse, C.
Deposit date:2019-11-17
Release date:2020-02-12
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Structural basis of p62/SQSTM1 helical filaments and their role in cellular cargo uptake.
Nat Commun, 11, 2020
8ONO
DownloadVisualize
BU of 8ono by Molmil
Modified oligopeptidase B from S. proteamaculans in intermediate conformation with 5 spermine molecule at 1.65 A resolution
Descriptor: Oligopeptidase B, SPERMINE
Authors:Petrenko, D.E, Boyko, K.M, Nikolaeva, A.Y, Vlaskina, A.V, Mikhailova, A.G, Timofeev, V.I, Rakitina, T.V.
Deposit date:2023-04-03
Release date:2023-05-31
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Modified oligopeptidase B from S. proteomaculans in intermediate conformation with 5 spermine molecule at 1.65 A resolution
To Be Published
6T4N
DownloadVisualize
BU of 6t4n by Molmil
Human Carbonic anhydrase II bound by 2,4,6-trimethylbenzenesulfonamide
Descriptor: 2,4,6-trimethylbenzenesulfonamide, 2-piperazin-1-ylethanol, BICINE, ...
Authors:Smirnov, A, Manakova, E, Grazulis, S.
Deposit date:2019-10-14
Release date:2020-10-14
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Isoform-Selective Enzyme Inhibitors by Exploring Pocket Size According to the Lock-and-Key Principle.
Biophys.J., 119, 2020
5NQF
DownloadVisualize
BU of 5nqf by Molmil
Crystal structure of Plasmodium falciparum AMA1 in complex with a 39 aa PvRON2 peptide
Descriptor: Apical membrane antigen 1, Rhoptry neck protein 2
Authors:Vulliez-le Normand, B, Saul, F.A, Faber, B.W, Bentley, G.A.
Deposit date:2017-04-20
Release date:2017-09-06
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Cross-reactivity between apical membrane antgen 1 and rhoptry neck protein 2 in P. vivax and P. falciparum: A structural and binding study.
PLoS ONE, 12, 2017
4O3W
DownloadVisualize
BU of 4o3w by Molmil
Crystal structure of the vaccine antigen Transferrin Binding Protein B (TbpB) mutant Tyr-63-Ala from Actinobacillus suis H57
Descriptor: GLYCEROL, SULFATE ION, Transferrin binding protein B
Authors:Calmettes, C, Yu, R.H, Schryvers, A.B, Moraes, T.F.
Deposit date:2013-12-18
Release date:2015-01-14
Last modified:2015-03-04
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Nonbinding site-directed mutants of transferrin binding protein B exhibit enhanced immunogenicity and protective capabilities.
Infect.Immun., 83, 2015
5E7F
DownloadVisualize
BU of 5e7f by Molmil
Complex between lactococcal phage Tuc2009 RBP head domain and a nanobody (L06)
Descriptor: Major structural protein 1, nanobody L06
Authors:Legrand, P, Collins, B, Blangy, S, Murphy, J, Spinelli, S, Gutierrez, C, Richet, N, Kellenberger, C, Desmyter, A, Mahony, J, van Sinderen, D, Cambillau, C.
Deposit date:2015-10-12
Release date:2015-12-30
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The Atomic Structure of the Phage Tuc2009 Baseplate Tripod Suggests that Host Recognition Involves Two Different Carbohydrate Binding Modules.
Mbio, 7, 2016
8OSK
DownloadVisualize
BU of 8osk by Molmil
Cryo-EM structure of CLOCK-BMAL1 bound to a nucleosomal E-box at position SHL+5.8 (composite map)
Descriptor: Basic helix-loop-helix ARNT-like protein 1, Circadian locomoter output cycles protein kaput, DNA (124-MER), ...
Authors:Stoos, L, Michael, A.K, Kempf, G, Cavadini, S, Thoma, N.H.
Deposit date:2023-04-19
Release date:2023-05-24
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Cooperation between bHLH transcription factors and histones for DNA access.
Nature, 619, 2023

226262

數據於2024-10-16公開中

PDB statisticsPDBj update infoContact PDBjnumon