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PDB: 89472 results

8G8D
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BU of 8g8d by Molmil
Crystal structure of DH1346 Fab in complex with HIV proximal MPER peptide
Descriptor: DH1346 heavy chain, DH1346 light chain, FLUORIDE ION, ...
Authors:Niyongabo, A, Janus, B.M, Ofek, G.
Deposit date:2023-02-17
Release date:2024-05-22
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Vaccine induction of heterologous HIV-1-neutralizing antibody B cell lineages in humans.
Cell, 187, 2024
5NW3
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BU of 5nw3 by Molmil
The cryofrozen atomic resolution X-ray crystal structure of perdeuterated Pyrococcus furiosus Rubredoxin (100K, 0.59A resolution)
Descriptor: FE (III) ION, PHOSPHATE ION, POTASSIUM ION, ...
Authors:Cuypers, M.G, Mason, S.A, Mossou, E, Haertlein, M, Forsyth, V.T.
Deposit date:2017-05-04
Release date:2017-06-07
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (0.59 Å)
Cite:The cryofrozen atomic resolution X-ray crystal structure of perdeuterated Pyrococcus furiosus Rubredoxin (100K, 0.59A resolution)
To Be Published
5MTK
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BU of 5mtk by Molmil
Crystal structure of human Caspase-1 with (3S,6S,10aS)-N-((2S,3S)-2-hydroxy-5-oxotetrahydrofuran-3-yl)-6-(isoquinoline-1-carboxamido)-5-oxodecahydropyrrolo[1,2-a]azocine-3-carboxamide (PGE-3935199)
Descriptor: (3~{S})-3-[[(3~{S},6~{S},10~{a}~{S})-6-(isoquinolin-1-ylcarbonylamino)-5-oxidanylidene-2,3,6,7,8,9,10,10~{a}-octahydro-1~{H}-pyrrolo[1,2-a]azocin-3-yl]carbonylamino]-4-oxidanyl-butanoic acid, Caspase-1
Authors:Brethon, A, Chantalat, L, Christin, O, Clary, L, Fournier, J.F, Gastreich, M, Harris, C, Pascau, J, Isabet, T, Rodeschin, V, Thoreau, E, Roche, D.
Deposit date:2017-01-09
Release date:2018-02-28
Method:X-RAY DIFFRACTION (2.53 Å)
Cite:Playing against the odds: scaffold hopping from 3D-fragments
To Be Published
3S90
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BU of 3s90 by Molmil
Human vinculin head domain Vh1 (residues 1-252) in complex with murine talin (VBS33; residues 1512-1546)
Descriptor: Talin-1, Vinculin
Authors:Yogesha, S.D, Sharff, A, Bricogne, G, Izard, T.
Deposit date:2011-05-31
Release date:2011-06-22
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Intermolecular versus intramolecular interactions of the vinculin binding site 33 of talin.
Protein Sci., 20, 2011
3OOH
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BU of 3ooh by Molmil
Crystal structure of E. Coli purine nucleoside phosphorylase with PO4
Descriptor: PHOSPHATE ION, Purine nucleoside phosphorylase deoD-type
Authors:Mikleusevic, G, Stefanic, Z, Narzyk, M, Wielgus-Kutrowska, B, Bzowska, A, Luic, M.
Deposit date:2010-08-31
Release date:2011-07-13
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Validation of the catalytic mechanism of Escherichia coli purine nucleoside phosphorylase by structural and kinetic studies.
Biochimie, 93, 2011
8G8A
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BU of 8g8a by Molmil
Crystal structure of DH1317.8 Fab in complex with HIV proximal MPER peptide
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, DH1317.8 heavy chain, DH1317.8 light chain, ...
Authors:Janus, B.M, Astavans, A, Ofek, G.
Deposit date:2023-02-17
Release date:2024-05-22
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.44 Å)
Cite:Vaccine induction of heterologous HIV-1-neutralizing antibody B cell lineages in humans.
Cell, 187, 2024
7A06
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BU of 7a06 by Molmil
Structure of human CKa1 in complex with compound o
Descriptor: 1,2-ETHANEDIOL, 1-[(4-phenylphenyl)methyl]-4-pyrrolidin-1-yl-pyridine, Choline kinase alpha
Authors:Serran-Aguilera, L, Mariotto, E, Rubbini, G, Castro Navas, F.C, Marco, C, Carrasco-Jimenez, M.P, Ballarotto, M, Macchiarulo, A, Hurtado-Guerrero, R, Viola, G, Lopez-Cara, L.C.
Deposit date:2020-08-06
Release date:2020-09-09
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Synthesis, biological evaluation, in silico modeling and crystallization of novel small monocationic molecules with potent antiproliferative activity by dual mechanism.
Eur.J.Med.Chem., 207, 2020
8DYN
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BU of 8dyn by Molmil
Antimicrobial lasso peptide cloacaenodin
Descriptor: Cloacaenodin
Authors:Carson, D.V, Link, A.J.
Deposit date:2022-08-04
Release date:2022-12-07
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Cloacaenodin, an Antimicrobial Lasso Peptide with Activity against Enterobacter .
Acs Infect Dis., 9, 2023
6SDP
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BU of 6sdp by Molmil
Trypanosoma cruzi farnesyl diphosphate synthase in complex with fragment 4np
Descriptor: Farnesyl diphosphate synthase, P-NITROPHENOL, SULFATE ION, ...
Authors:Magari, F, Heine, A, Klebe, G.
Deposit date:2019-07-29
Release date:2020-08-26
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Trypanosoma cruzi farnesyl diphosphate synthase in complex with fragment 4np
To Be Published
5MBT
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BU of 5mbt by Molmil
CeuE (H227L, Y288F variant) a periplasmic protein from Campylobacter jejuni
Descriptor: Enterochelin uptake periplasmic binding protein
Authors:Wilde, E.J, Blagova, E.V, Hughes, A, Raines, D.J, Moroz, O.V, Turkenburg, J.P, Duhme-Klair, A.-K, Wilson, K.S.
Deposit date:2016-11-08
Release date:2017-04-12
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Interactions of the periplasmic binding protein CeuE with Fe(III) n-LICAM(4-) siderophore analogues of varied linker length.
Sci Rep, 7, 2017
5MUP
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BU of 5mup by Molmil
Structure of deformed wing virus, a honeybee pathogen
Descriptor: URIDINE-5'-MONOPHOSPHATE, VP1, VP2, ...
Authors:Skubnik, K, Novacek, J, Fuzik, T, Pridal, A, Paxton, R, Plevka, P.
Deposit date:2017-01-13
Release date:2017-04-05
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structure of deformed wing virus, a major honey bee pathogen.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
7XMP
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BU of 7xmp by Molmil
High resolution structure of lectin-like Ox-LDL receptor 1 in space group P 32 2 1
Descriptor: Oxidized low-density lipoprotein receptor 1
Authors:Tomar, A, Varughese, K.I, Arockiasamy, A.
Deposit date:2022-04-26
Release date:2023-05-03
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.27 Å)
Cite:High resolution structure of lectin like Ox-LDL receptor 1 in space group P 32 2 1
To Be Published
8DQG
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BU of 8dqg by Molmil
Crystal structure of pyrrolysyl-tRNA synthetase from Methanomethylophilus alvus engineered for acridone amino acid (RS1) bound to AMPPNP and acridone
Descriptor: (2~{S})-2-azanyl-3-(9-oxidanylidene-10~{H}-acridin-2-yl)propanoic acid, AA_TRNA_LIGASE_II domain-containing protein, DI(HYDROXYETHYL)ETHER, ...
Authors:Gottfried-Lee, I, Karplus, P.A, Mehl, R.A, Cooley, R.B.
Deposit date:2022-07-19
Release date:2022-12-07
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Structures of Methanomethylophilus alvus Pyrrolysine tRNA-Synthetases Support the Need for De Novo Selections When Altering the Substrate Specificity.
Acs Chem.Biol., 17, 2022
2WK5
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BU of 2wk5 by Molmil
Structural features of native human thymidine phosphorylase and in complex with 5-iodouracil
Descriptor: GLYCEROL, THYMIDINE PHOSPHORYLASE
Authors:Mitsiki, E, Papageorgiou, A.C, Iyer, S, Thiyagarajan, N, Prior, S.H, Sleep, D, Finnis, C, Acharya, K.R.
Deposit date:2009-06-05
Release date:2009-07-07
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.99 Å)
Cite:Structures of Native Human Thymidine Phosphorylase and in Complex with 5-Iodouracil.
Biochem.Biophys.Res.Commun., 386, 2009
8Q5P
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BU of 8q5p by Molmil
Structure of the lysine methyltransferase SETD2 in complex with a peptide derived from human tyrosine kinase ACK1
Descriptor: Activated CDC42 kinase 1, Histone-lysine N-methyltransferase SETD2, S-ADENOSYLMETHIONINE, ...
Authors:Mechaly, A, Le Coadou, L, Dupret, J.M, Haouz, A, Rodrigues Lima, F.
Deposit date:2023-08-09
Release date:2024-04-24
Method:X-RAY DIFFRACTION (1.814 Å)
Cite:Structural and enzymatic evidence for the methylation of the ACK1 tyrosine kinase by the histone lysine methyltransferase SETD2.
Biochem.Biophys.Res.Commun., 695, 2024
7FZS
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BU of 7fzs by Molmil
Crystal Structure of human FABP4 in complex with 6-chloro-4-[(2-chlorophenyl)methyl]-2-methylquinoline-3-carboxylic acid
Descriptor: 6-chloro-4-[(2-chlorophenyl)methyl]-2-methylquinoline-3-carboxylic acid, Fatty acid-binding protein, adipocyte, ...
Authors:Ehler, A, Benz, J, Obst, U, Conte, A, Rudolph, M.G.
Deposit date:2023-04-27
Release date:2023-06-14
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.04 Å)
Cite:Crystal Structure of a human FABP4 complex
To be published
5MV5
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BU of 5mv5 by Molmil
Structure of deformed wing virus, a honeybee pathogen
Descriptor: URIDINE-5'-MONOPHOSPHATE, VP1, VP2, ...
Authors:Skubnik, K, Novacek, J, Fuzik, T, Pridal, A, Paxton, R, Plevka, P.
Deposit date:2017-01-15
Release date:2017-04-05
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structure of deformed wing virus, a major honey bee pathogen.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
6SAW
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BU of 6saw by Molmil
Chromophore binding domain of bacteriophytochrome linked diguanylyl cyclase from Idiomarina species A28L (dimeric Pfr-like state).
Descriptor: 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid, CHLORIDE ION, Diguanylate cyclase (GGDEF) domain-containing protein
Authors:Gourinchas, G, Winkler, A.
Deposit date:2019-07-18
Release date:2019-12-11
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (3 Å)
Cite:Distinct chromophore-protein environments enable asymmetric activation of a bacteriophytochrome-activated diguanylate cyclase.
J.Biol.Chem., 295, 2020
8QKA
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BU of 8qka by Molmil
Structure of K. pneumoniae LpxH in complex with JEDI-852
Descriptor: 2-[methyl(methylsulfonyl)amino]-~{N}-(4-piperidin-1-ylsulfonylphenyl)benzamide, MANGANESE (II) ION, UDP-2,3-diacylglucosamine hydrolase
Authors:Sooriyaarachchi, S, Bergfors, T, Jones, T.A, Mowbray, S.L.
Deposit date:2023-09-14
Release date:2024-04-17
Method:X-RAY DIFFRACTION (2 Å)
Cite:Antibiotic class with potent in vivo activity targeting lipopolysaccharide synthesis in Gram-negative bacteria.
Proc.Natl.Acad.Sci.USA, 121, 2024
8E3U
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BU of 8e3u by Molmil
Nickel-reconstituted nitrogenase MoFeP mutant S188A from Azotobacter vinelandii after IDS oxidation
Descriptor: 3-HYDROXY-3-CARBOXY-ADIPIC ACID, FE (III) ION, FE(7)-S(7) CLUSTER, ...
Authors:Rutledge, H.L, Tezcan, F.A.
Deposit date:2022-08-17
Release date:2022-12-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Role of Serine Coordination in the Structural and Functional Protection of the Nitrogenase P-Cluster.
J.Am.Chem.Soc., 144, 2022
6BSF
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BU of 6bsf by Molmil
Human GR (418-507) in complex with monomeric DNA binding site
Descriptor: DNA (5'-D(P*AP*AP*GP*CP*TP*AP*GP*TP*AP*CP*AP*TP*TP*TP*GP*C)-3'), DNA (5'-D(P*TP*GP*CP*AP*AP*AP*TP*GP*TP*AP*CP*TP*AP*GP*CP*T)-3'), Glucocorticoid receptor, ...
Authors:Pufall, M.A.
Deposit date:2017-12-02
Release date:2018-12-05
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:General and sequence-specific roles for DNA in glucocorticoid receptor DNA-binding stoichiometry
To Be Published
5O8I
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BU of 5o8i by Molmil
Crystal structure of human histidine triad nucleotide-binding protein 1 (hHINT1) crystallized at P212121 space group, and refined to 1.27 A
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Histidine triad nucleotide-binding protein 1
Authors:Dolot, R.M, Seda, A, Nawrot, B.C.
Deposit date:2017-06-13
Release date:2017-06-28
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.27 Å)
Cite:Differences in crystal packing as the key factor for stabilization of the N-terminal fragment of hHINT1 protein
To Be Published
5CUC
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BU of 5cuc by Molmil
Crystal structure of the bromodomain of bromodomain adjacent to zinc finger domain protein 2B (BAZ2B) in complex with N-Acetyl-2-phenylethylamine (SGC - Diamond I04-1 fragment screening)
Descriptor: 1,2-ETHANEDIOL, Bromodomain adjacent to zinc finger domain protein 2B, N-(2-phenylethyl)acetamide
Authors:Bradley, A, Pearce, N, Krojer, T, Ng, J, Talon, R, Vollmar, M, Jose, B, von Delft, F, Bountra, C, Arrowsmith, C.H, Edwards, A, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2015-07-24
Release date:2015-09-09
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of the second bromodomain of bromodomain adjancent to zinc finger domain protein 2B (BAZ2B) in complex with N-Acetyl-2-phenylethylamine (SGC - Diamond I04-1 fragment screening)
To be published
6XJ6
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BU of 6xj6 by Molmil
Crystal structure of the helical cell shape determining protein Pgp2 from Campylobacter jejuni
Descriptor: Pgp2
Authors:Lin, C.S, Chan, A.C, Murphy, M.E.
Deposit date:2020-06-23
Release date:2021-03-17
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.497 Å)
Cite:Peptidoglycan binding by a pocket on the accessory NTF2-domain of Pgp2 directs helical cell shape of Campylobacter jejuni.
J.Biol.Chem., 296, 2021
6P4X
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BU of 6p4x by Molmil
Crystal Structure of the S. cerevisiae glucokinase, Glk1
Descriptor: Glucokinase-1, PHOSPHATE ION
Authors:Stoddard, P.R, Garner, E.C, Murray, A.W.
Deposit date:2019-05-28
Release date:2020-03-11
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.59 Å)
Cite:Polymerization in the actin ATPase clan regulates hexokinase activity in yeast.
Science, 367, 2020

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數據於2024-10-16公開中

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