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PDB: 88608 results

7ZN2
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BU of 7zn2 by Molmil
Tail tip of siphophage T5 : full complex after interaction with its bacterial receptor FhuA
Descriptor: Distal tail protein, L-shaped tail fiber protein p132, Minor tail protein, ...
Authors:Linares, R, Arnaud, C.A, Effantin, G, Darnault, C, Epalle, N, Boeri Erba, E, Schoehn, G, Breyton, C.
Deposit date:2022-04-20
Release date:2023-02-08
Last modified:2023-07-05
Method:ELECTRON MICROSCOPY (4.29 Å)
Cite:Structural basis of bacteriophage T5 infection trigger and E. coli cell wall perforation.
Sci Adv, 9, 2023
8I9L
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BU of 8i9l by Molmil
Structure of C3a-C3aR-Go complex (Composite map)
Descriptor: Antibody fragment - ScFv16, C3a anaphylatoxin, C3a anaphylatoxin chemotactic receptor, ...
Authors:Yadav, M.K, Yadav, R, Maharana, J, Sarma, P, Banerjee, R, Shukla, A.K, Gati, C.
Deposit date:2023-02-07
Release date:2023-10-18
Last modified:2023-11-08
Method:ELECTRON MICROSCOPY (3.18 Å)
Cite:Molecular basis of anaphylatoxin binding, activation, and signaling bias at complement receptors.
Cell, 186, 2023
2VVO
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BU of 2vvo by Molmil
Crystal structure of Mycobacterium tuberculosis ribose-5-phosphate isomerase B in complex with alpha d-allose 6-phosphate
Descriptor: 6-O-phosphono-alpha-D-allopyranose, RIBOSE-5-PHOSPHATE ISOMERASE B
Authors:Roos, A.K, Mariano, S, Kowalinski, E, Salmon, L, Mowbray, S.L.
Deposit date:2008-06-10
Release date:2008-07-01
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:D-Ribose-5-Phosphate Isomerase B from Escherichia Coli is Also a Functional D-Allose-6-Phosphate Isomerase, While the Mycobacterium Tuberculosis Enzyme is not.
J.Mol.Biol., 382, 2008
2HYV
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BU of 2hyv by Molmil
Human Annexin A2 with heparin hexasaccharide bound
Descriptor: 4-deoxy-2-O-sulfo-alpha-L-threo-hex-4-enopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid, Annexin A2, CALCIUM ION
Authors:Shao, C, Head, J.F, Seaton, B.A.
Deposit date:2006-08-07
Release date:2006-09-05
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:Crystallographic analysis of calcium-dependent heparin binding to annexin A2.
J.Biol.Chem., 281, 2006
1T1V
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BU of 1t1v by Molmil
Crystal Structure of the Glutaredoxin-like Protein SH3BGRL3 at 1.6 A resolution
Descriptor: ACETIC ACID, GLYCEROL, SH3 domain-binding glutamic acid-rich protein-like 3, ...
Authors:Nardini, M, Mazzocco, M, Massaro, M, Maffei, M, Vergano, A, Donadini, A, Scartezzini, M, Bolognesi, M.
Deposit date:2004-04-19
Release date:2004-06-29
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of the glutaredoxin-like protein SH3BGRL3 at 1.6 A resolution
Biochem.Biophys.Res.Commun., 318, 2004
6W0D
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BU of 6w0d by Molmil
Open-gate KcsA soaked in 5 mM BaCl2
Descriptor: BARIUM ION, Fab Heavy Chain, Fab Light Chain, ...
Authors:Rohaim, A, Gong, L, Li, J.
Deposit date:2020-02-29
Release date:2020-07-08
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.639 Å)
Cite:Open and Closed Structures of a Barium-Blocked Potassium Channel.
J.Mol.Biol., 432, 2020
2WAL
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BU of 2wal by Molmil
Crystal Structure of human GADD45gamma
Descriptor: GROWTH ARREST AND DNA-DAMAGE-INDUCIBLE PROTEIN GADD45 GAMMA, MALONIC ACID
Authors:Bhattacharya, S, Mueller, J.J, Roske, Y, Turnbull, A.P, Quedenau, C, Goetz, F, Buessow, K, Heinemann, U.
Deposit date:2009-02-09
Release date:2009-03-03
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The Crystal Structure of Human Gadd45Gamma
To be Published
6W0J
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BU of 6w0j by Molmil
Closed-gate KcsA incubated in BaCl2/NaCl
Descriptor: BARIUM ION, Fab Heavy Chain, Fab Light Chain, ...
Authors:Rohaim, A, Gong, L, Li, J.
Deposit date:2020-02-29
Release date:2020-07-08
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Open and Closed Structures of a Barium-Blocked Potassium Channel.
J.Mol.Biol., 432, 2020
2HZR
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BU of 2hzr by Molmil
Crystal structure of human apolipoprotein D (ApoD)
Descriptor: Apolipoprotein D
Authors:Eichinger, A, Skerra, A.
Deposit date:2006-08-09
Release date:2007-08-14
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural insight into the dual ligand specificity and mode of high density lipoprotein association of apolipoprotein d.
J.Biol.Chem., 282, 2007
7B4J
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BU of 7b4j by Molmil
Thermostable omega transaminase PjTA-R6 variant W58M/F86L/R417L engineered for asymmetric synthesis of enantiopure bulky amines
Descriptor: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE, Aspartate aminotransferase family protein, SUCCINIC ACID
Authors:Capra, N, Rozeboom, H.J, Thunnissen, A.M.W.H, Janssen, D.B.
Deposit date:2020-12-02
Release date:2021-09-01
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Computational Redesign of an omega-Transaminase from Pseudomonas jessenii for Asymmetric Synthesis of Enantiopure Bulky Amines.
Acs Catalysis, 11, 2021
1T2B
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BU of 1t2b by Molmil
Crystal Structure of cytochrome P450cin complexed with its substrate 1,8-cineole
Descriptor: 1,3,3-TRIMETHYL-2-OXABICYCLO[2.2.2]OCTANE, P450cin, PROTOPORPHYRIN IX CONTAINING FE
Authors:Meharenna, Y.T, Li, H, Hawkes, D.B, Pearson, A.G, De Voss, J, Poulos, T.L.
Deposit date:2004-04-20
Release date:2005-04-26
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of P450cin in a complex with its substrate, 1,8-cineole, a close structural homologue to D-camphor, the substrate for P450cam
Biochemistry, 43, 2004
8IA2
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BU of 8ia2 by Molmil
Structure of C5a bound human C5aR1 in complex with Go (Composite map)
Descriptor: Antibody fragment - ScFv16, C5a anaphylatoxin, C5a anaphylatoxin chemotactic receptor 1, ...
Authors:Yadav, M.K, Yadav, R, Maharana, J, Banerjee, R, Shukla, A.K, Gati, C.
Deposit date:2023-02-07
Release date:2023-10-18
Last modified:2023-11-08
Method:ELECTRON MICROSCOPY (3.21 Å)
Cite:Molecular basis of anaphylatoxin binding, activation, and signaling bias at complement receptors.
Cell, 186, 2023
1T40
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BU of 1t40 by Molmil
Crystal structure of human aldose reductase complexed with NADP and IDD552 at ph 5
Descriptor: Aldose reductase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, [5-FLUORO-2-({[(4,5,7-TRIFLUORO-1,3-BENZOTHIAZOL-2-YL)METHYL]AMINO}CARBONYL)PHENOXY]ACETIC ACID
Authors:Ruiz, F, Hazemann, I, Mitschler, A, Chevrier, B, Schneider, T, Joachimiak, A, Karplus, M, Podjarny, A.
Deposit date:2004-04-28
Release date:2004-08-03
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The crystallographic structure of the aldose reductase-IDD552 complex shows direct proton donation from tyrosine 48.
Acta Crystallogr.,Sect.D, 60, 2004
4R9L
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BU of 4r9l by Molmil
Structure of a thermostable elevenfold mutant of limonene epoxide hydrolase from Rhodococcus erythropolis, containing two stabilizing disulfide bonds
Descriptor: (2R)-2-hydroxyhexanamide, Limonene-1,2-epoxide hydrolase
Authors:Floor, R.J, Wijma, H.J, Jekel, P.A, Terwisscha van Scheltinga, A.C, Dijkstra, B.W, Janssen, D.B.
Deposit date:2014-09-05
Release date:2014-09-24
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:X-ray crystallographic validation of structure predictions used in computational design for protein stabilization.
Proteins, 83, 2015
8I9A
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BU of 8i9a by Molmil
Structure of EP54-C3aR-Gq complex
Descriptor: Antibody fragment - ScFv16, C3a anaphylatoxin chemotactic receptor, EP54 ligand, ...
Authors:Yadav, M.K, Yadav, R, Maharana, J, Sarma, P, Banerjee, R, Shukla, A.K, Gati, C.
Deposit date:2023-02-06
Release date:2023-10-18
Last modified:2023-11-08
Method:ELECTRON MICROSCOPY (3.57 Å)
Cite:Molecular basis of anaphylatoxin binding, activation, and signaling bias at complement receptors.
Cell, 186, 2023
4R9X
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BU of 4r9x by Molmil
Crystal Structure of Putative Copper Homeostasis Protein CutC from Bacillus anthracis
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, Copper homeostasis protein CutC, ...
Authors:Kim, Y, Zhou, M, Makowska-Grzyska, M, Grimshaw, S, Anderson, W.F, Joachimiak, A, CSGID, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2014-09-08
Release date:2014-09-17
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (1.8515 Å)
Cite:Crystal Structure of Putative Copper Homeostasis Protein CutC from Bacillus anthracis
To be Published, 2014
3EEE
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BU of 3eee by Molmil
Probing the function of heme distortion in the H-NOX family
Descriptor: CHLORIDE ION, Methyl-accepting chemotaxis protein, OXYGEN MOLECULE, ...
Authors:Olea Jr, C, Boon, E.M, Pellicena, P, Kuriyan, J, Marletta, M.A.
Deposit date:2008-09-04
Release date:2008-11-25
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:Probing the function of heme distortion in the H-NOX family.
Acs Chem.Biol., 3, 2008
7T4K
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BU of 7t4k by Molmil
Structure of dimeric phosphorylated Pediculus humanus (Ph) PINK1 with kinked alpha-C helix in chain B
Descriptor: Serine/threonine-protein kinase PINK1, putative
Authors:Gan, Z.Y, Leis, A, Dewson, G, Glukhova, A, Komander, D.
Deposit date:2021-12-10
Release date:2022-01-12
Last modified:2022-02-23
Method:ELECTRON MICROSCOPY (3.25 Å)
Cite:Activation mechanism of PINK1.
Nature, 602, 2022
6IP7
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BU of 6ip7 by Molmil
Structure of human telomeric DNA with 5-Selenophene-modified deoxyuridine at residue 11
Descriptor: DNA (22-MER), POTASSIUM ION
Authors:Saikrishnan, K, Nuthanakanti, A, Srivatsan, S.G, Ahmad, I.
Deposit date:2018-11-02
Release date:2019-05-15
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Probing G-quadruplex topologies and recognition concurrently in real time and 3D using a dual-app nucleoside probe.
Nucleic Acids Res., 47, 2019
7T4N
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BU of 7t4n by Molmil
Structure of dimeric unphosphorylated Pediculus humanus (Ph) PINK1 D357A mutant
Descriptor: Serine/threonine-protein kinase PINK1, putative
Authors:Gan, Z.Y, Leis, A, Dewson, G, Glukhova, A, Komander, D.
Deposit date:2021-12-10
Release date:2022-01-12
Last modified:2024-02-28
Method:ELECTRON MICROSCOPY (2.35 Å)
Cite:Activation mechanism of PINK1.
Nature, 602, 2022
5KHJ
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BU of 5khj by Molmil
HCN2 CNBD in complex with uridine-3', 5'-cyclic monophosphate (cUMP)
Descriptor: Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2, Uridine-3',5'-cyclic monophosphate
Authors:Ng, L.C.T, Putrenko, I, Baronas, V, Van Petegem, F, Accili, E.A.
Deposit date:2016-06-14
Release date:2016-09-14
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Cyclic Purine and Pyrimidine Nucleotides Bind to the HCN2 Ion Channel and Variably Promote C-Terminal Domain Interactions and Opening.
Structure, 24, 2016
6CIA
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BU of 6cia by Molmil
Crystal structure of aldo-keto reductase from Klebsiella pneumoniae in complex with NADPH.
Descriptor: Aldo/keto reductase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Lipowska, J, Leung, E.S, Shabalin, I.G, Grabowski, M, Almo, S.C, Satchell, K.J, Joachimiak, A, Lewinski, K, Minor, W, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2018-02-23
Release date:2018-03-07
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of of aldo-keto reductase from Klebsiella pneumoniae in complex with NADPH.
to be published
6I8O
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BU of 6i8o by Molmil
Dye type peroxidase Aa from Streptomyces lividans: 39.2kGy structure
Descriptor: Deferrochelatase/peroxidase, PROTOPORPHYRIN IX CONTAINING FE
Authors:Ebrahim, A, Moreno-Chicano, T, Worrall, J.A.R, Strange, R.W, Axford, D, Sherrell, D.A, Appleby, M, Owen, R.L.
Deposit date:2018-11-20
Release date:2019-07-31
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Dose-resolved serial synchrotron and XFEL structures of radiation-sensitive metalloproteins.
Iucrj, 6, 2019
2I7A
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BU of 2i7a by Molmil
Domain IV of Human Calpain 13
Descriptor: CALCIUM ION, Calpain 13, GLYCEROL, ...
Authors:Walker, J.R, Ng, K, Davis, T.L, Ravulapalli, R, Butler-cole, C, Finerty Jr, P.J, Newman, E.M, Weigelt, J, Sundstrom, M, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A, Dhe-Paganon, S, Structural Genomics Consortium (SGC)
Deposit date:2006-08-30
Release date:2006-09-12
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of Human Calpain 13
To be Published
5UTX
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BU of 5utx by Molmil
Crystal structure of thioredoxin-disulfide reductase from Vibrio vulnificus CMCP6 - apo form
Descriptor: PHOSPHATE ION, Thioredoxin reductase
Authors:Chang, C, Grimshaw, S, Maltseva, N, Mulligan, R, Anderson, W.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2017-02-15
Release date:2017-02-22
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.46 Å)
Cite:Crystal structure of thioredoxin-disulfide reductase from Vibrio vulnificus CMCP6 - apo form
To Be Published

222926

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