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PDB: 88675 件

6SRL
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X-ray pump X-ray probe on thaumatin nanocrystals: 54 fs time delay
分子名称: L(+)-TARTARIC ACID, Thaumatin-1
著者Kloos, M, Gorel, A, Nass, K.
登録日2019-09-05
公開日2020-04-22
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural dynamics in proteins induced by and probed with X-ray free-electron laser pulses.
Nat Commun, 11, 2020
7BK7
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PfCopC mutant - D83N
分子名称: ACETATE ION, CHLORIDE ION, COPPER (II) ION, ...
著者Muderspach, S.J, Ipsen, J, Rollan, C.H, Bertelsen, A.B, Norholm, M.H.H, Johansen, K.S, Lo Leggio, L.
登録日2021-01-15
公開日2021-07-07
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Copper binding and reactivity at the histidine brace motif: insights from mutational analysis of the Pseudomonas fluorescens copper chaperone CopC.
Febs Lett., 595, 2021
4WWM
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X-ray crystal structure of Sulfolobus solfataricus Urm1
分子名称: SULFATE ION, Uncharacterized protein
著者Bray, S.M, Anjum, S.R, Blackwood, J.K, Kilkenny, M.L, Coelho, M.A, Foster, B.M, Pellegrini, L, Robinson, N.P.
登録日2014-11-11
公開日2015-09-23
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Involvement of a eukaryotic-like ubiquitin-related modifier in the proteasome pathway of the archaeon Sulfolobus acidocaldarius.
Nat Commun, 6, 2015
8AMG
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Crystal structure of AUGUGGCAU duplex with barium ions (model 1)
分子名称: BARIUM ION, RNA (5'-R(*AP*UP*GP*UP*GP*GP*CP*AP*U)-3')
著者Kiliszek, A, Rypniewski, W.
登録日2022-08-03
公開日2022-11-23
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (2.26 Å)
主引用文献Structure and thermodynamics of a UGG motif interacting with Ba2+ and other metal ions: accommodating changes in the RNA structure and the presence of a G(syn)-G(syn) pair.
Rna, 29, 2022
8AMM
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Crystal structure of AUGUGGCAU duplex with cesium ions
分子名称: CESIUM ION, RNA (5'-R(*AP*UP*GP*UP*GP*GP*CP*AP*U)-3')
著者Kiliszek, A, Rypniewski, W.
登録日2022-08-03
公開日2022-11-23
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.86 Å)
主引用文献Structure and thermodynamics of a UGG motif interacting with Ba2+ and other metal ions: accommodating changes in the RNA structure and the presence of a G(syn)-G(syn) pair.
Rna, 29, 2022
5N7U
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BU of 5n7u by Molmil
cAMP-dependent Protein Kinase A from Cricetulus griseus in complex with fragment like molecule 4-Bromo-3,5-dimethyl-1H-pyrazole
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 4-bromanyl-3,5-dimethyl-1~{H}-pyrazole, cAMP-dependent protein kinase catalytic subunit alpha, ...
著者Siefker, C, Heine, A, Klebe, G.
登録日2017-02-21
公開日2018-03-21
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.371 Å)
主引用文献A crystallographic study with cAMP-dependent protein kinase A
to be published
5IWO
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Bacterial sodium channel pore domain, low bromide
分子名称: BROMIDE ION, Ion transport protein
著者Shaya, D, Findeisen, F, Rohaim, A, Minor, D.L.
登録日2016-03-22
公開日2016-03-30
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (3.33 Å)
主引用文献Unfolding of a Temperature-Sensitive Domain Controls Voltage-Gated Channel Activation.
Cell, 164, 2016
6X9X
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BU of 6x9x by Molmil
Crystal structure of Fab fragment of Anti-HCV E2 antibody (HC84.26)
分子名称: 1,2-ETHANEDIOL, ACETATE ION, HC84.26 Fab Heavy Chain, ...
著者Shahid, S, Mariuzza, R.A.
登録日2020-06-03
公開日2020-12-02
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal Structure of a Bivalent Antibody Fab Fragment.
J.Mol.Biol., 433, 2020
7NTU
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X-ray structure of the complex between human alpha thrombin and two duplex/quadruplex aptamers: NU172 and HD22_27mer
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide, HD22_27mer, ...
著者Troisi, R, Santamaria, A, Sica, F.
登録日2021-03-10
公開日2021-04-28
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Structural and functional analysis of the simultaneous binding of two duplex/quadruplex aptamers to human alpha-thrombin.
Int.J.Biol.Macromol., 181, 2021
8AMJ
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Crystal structure of unliganded AUGUGGCAU duplex
分子名称: ACETATE ION, RNA (5'-R(*AP*UP*GP*UP*GP*GP*CP*AP*U)-3'), SULFATE ION
著者Kiliszek, A, Rypniewski, W.
登録日2022-08-03
公開日2022-11-23
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.02 Å)
主引用文献Structure and thermodynamics of a UGG motif interacting with Ba2+ and other metal ions: accommodating changes in the RNA structure and the presence of a G(syn)-G(syn) pair.
Rna, 29, 2022
8AMK
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BU of 8amk by Molmil
Crystal structure of AUGUGGCAU duplex crystallized in the presence of calcium ions
分子名称: RNA (5'-R(*AP*UP*GP*UP*GP*GP*CP*AP*U)-3')
著者Kiliszek, A, Rypniewski, W.
登録日2022-08-03
公開日2022-11-23
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献Structure and thermodynamics of a UGG motif interacting with Ba2+ and other metal ions: accommodating changes in the RNA structure and the presence of a G(syn)-G(syn) pair.
Rna, 29, 2022
8DS6
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BU of 8ds6 by Molmil
Structure of the PEAK3 pseudokinase homodimer
分子名称: Protein PEAK3
著者Torosyan, H, Paul, M, Jura, N, Verba, K.A.
登録日2022-07-21
公開日2023-06-28
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (4.9 Å)
主引用文献Structural insights into regulation of the PEAK3 pseudokinase scaffold by 14-3-3.
Nat Commun, 14, 2023
8AMN
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Crystal structure of AUGUGGCAU duplex with strontium ions
分子名称: RNA (5'-R(*AP*UP*GP*UP*GP*GP*CP*AP*U)-3'), STRONTIUM ION
著者Kiliszek, A, Rypniewski, W.
登録日2022-08-03
公開日2022-11-23
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.46 Å)
主引用文献Structure and thermodynamics of a UGG motif interacting with Ba2+ and other metal ions: accommodating changes in the RNA structure and the presence of a G(syn)-G(syn) pair.
Rna, 29, 2022
8AML
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BU of 8aml by Molmil
Crystal structure of AUGUGGCAU duplex with cadmium ions
分子名称: CADMIUM ION, RNA (5'-R(*AP*UP*GP*UP*GP*GP*CP*AP*U)-3')
著者Kiliszek, A, Rypniewski, W.
登録日2022-08-03
公開日2022-11-23
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献Structure and thermodynamics of a UGG motif interacting with Ba2+ and other metal ions: accommodating changes in the RNA structure and the presence of a G(syn)-G(syn) pair.
Rna, 29, 2022
8I7J
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BU of 8i7j by Molmil
Yeast 40S-eIF4B - partially open conformation of the 40S head
分子名称: 40S ribosomal protein S0, 40S ribosomal protein S1, 40S ribosomal protein S12, ...
著者Datey, A, Khaja, F.T, Hussain, T.
登録日2023-01-31
公開日2024-02-07
実験手法ELECTRON MICROSCOPY (4.6 Å)
主引用文献Yeast eukaryotic initiation factor 4B remodels the mRNA entry site on the small ribosomal subunit
To Be Published
5N48
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BU of 5n48 by Molmil
Structure of Anticalin N9B in complex with extra-domain B of human oncofetal fibronectin
分子名称: Fibronectin, Neutrophil gelatinase-associated lipocalin
著者Schiefner, A, Skerra, A.
登録日2017-02-10
公開日2018-02-14
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Anticalins Reveal High Plasticity in the Mode of Complex Formation with a Common Tumor Antigen.
Structure, 26, 2018
5N4Y
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BU of 5n4y by Molmil
Crystal structure of human Pim-1 kinase in complex with a consensus peptide and fragment like molecule 2,5-dihydro-1H-isothiochromeno[3,4-d]pyrazol-3-one
分子名称: 2,5-dihydro-1~{H}-isothiochromeno[4,3-c]pyrazol-3-one, Pimtide, Serine/threonine-protein kinase pim-1
著者Siefker, C, Heine, A, Klebe, G.
登録日2017-02-11
公開日2018-02-28
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.56 Å)
主引用文献A crystallographic fragment study with human Pim-1 kinase
to be published
5N56
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Staphylococcus aureus Mn-dependent superoxide dismutase SodA
分子名称: MANGANESE (II) ION, Superoxide dismutase [Mn/Fe] 1
著者Barwinska-Sendra, A, Basle, A, Waldron, K.
登録日2017-02-13
公開日2018-03-07
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.07 Å)
主引用文献A charge polarization model for the metal-specific activity of superoxide dismutases.
Phys Chem Chem Phys, 20, 2018
8AE1
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BU of 8ae1 by Molmil
Structure of trimeric SlpA outer membrane protein
分子名称: CALCIUM ION, S-layer protein SlpA
著者von Kuegelgen, A, Bharat, T.A.M.
登録日2022-07-12
公開日2022-11-30
実験手法ELECTRON MICROSCOPY (3.25 Å)
主引用文献A multidomain connector links the outer membrane and cell wall in phylogenetically deep-branching bacteria.
Proc.Natl.Acad.Sci.USA, 119, 2022
5N5L
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BU of 5n5l by Molmil
Crystal structure of human Pim-1 kinase in complex with a consensuspeptide and [2-oxo-2-(1H-pyrrol-2-yl)ethyl] 5-bromo-1H-indole-3-carboxylate
分子名称: 5-bromanyl-1~{H}-indole-3-carboxylic acid, GLYCEROL, Pimtide, ...
著者Siefker, C, Heine, A, Klebe, G.
登録日2017-02-14
公開日2018-03-07
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.97 Å)
主引用文献A crystallographic fragment study with human Pim-1 kinase
to be published
4X46
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X-RAY structure thymidine phosphorylase from Salmonella typhimurium complex with SO4 at 2.19 A
分子名称: 1,2-ETHANEDIOL, SULFATE ION, Thymidine phosphorylase
著者Balaev, V.V, Lashkov, A.A, Prokofev, I.I, Gabdoulkhakov, A.G, Betzel, C, Mikhailov, A.M.
登録日2014-12-02
公開日2015-12-23
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献X-RAY structure thymidine phosphorylase from Salmonella typhimurium complex with SO4 at 2.19 A
To Be Published
5LZY
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Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.
分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S12, ...
著者Shao, S, Murray, J, Brown, A, Taunton, J, Ramakrishnan, V, Hegde, R.S.
登録日2016-10-02
公開日2016-11-30
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (3.99 Å)
主引用文献Decoding Mammalian Ribosome-mRNA States by Translational GTPase Complexes.
Cell, 167, 2016
8PPG
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BU of 8ppg by Molmil
Human inositol 1,4,5-trisphosphate 3-kinase A (IP3K) catalytic domain in complex with beta-D-glucopyranosyl 1,3,4,6-tetrakisphosphate/ADP/Mn after reaction
分子名称: ADENOSINE-5'-DIPHOSPHATE, Inositol-trisphosphate 3-kinase A, MANGANESE (II) ION, ...
著者Marquez-Monino, M.A, Gonzalez, B.
登録日2023-07-07
公開日2024-02-28
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Substrate promiscuity of inositol 1,4,5-trisphosphate kinase driven by structurally-modified ligands and active site plasticity.
Nat Commun, 15, 2024
8PP9
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Human inositol 1,4,5-trisphosphate 3-kinase A (IP3K) catalytic domain in complex with scyllo-inositol 1,2,3,5-tetrakisphosphate/ADP/Mn
分子名称: ADENOSINE-5'-DIPHOSPHATE, Inositol-trisphosphate 3-kinase A, MANGANESE (II) ION, ...
著者Marquez-Monino, M.A, Gonzalez, B.
登録日2023-07-07
公開日2024-02-28
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.73 Å)
主引用文献Substrate promiscuity of inositol 1,4,5-trisphosphate kinase driven by structurally-modified ligands and active site plasticity.
Nat Commun, 15, 2024
8PPE
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Human inositol 1,4,5-trisphosphate 3-kinase A (IP3K) catalytic domain in complex with DL-6-deoxy-6-phosphoryloxymethyl-scyllo-inositol 1,2,4-trisphosphate/ADP/Mn
分子名称: ADENOSINE-5'-DIPHOSPHATE, DL-6-deoxy-6-phosphoryloxymethyl-scyllo-inositol 1,2,4-trisphosphate, GLYCEROL, ...
著者Marquez-Monino, M.A, Gonzalez, B.
登録日2023-07-07
公開日2024-02-28
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.59 Å)
主引用文献Substrate promiscuity of inositol 1,4,5-trisphosphate kinase driven by structurally-modified ligands and active site plasticity.
Nat Commun, 15, 2024

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