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PDB: 88675 件

7NT5
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CryoEM structure of the Nipah virus nucleocapsid single helical turn assembly
分子名称: Nucleoprotein, RNA (78-MER)
著者Ker, D.S, Jenkins, H.T, Greive, S.J, Antson, A.A.
登録日2021-03-09
公開日2021-07-07
最終更新日2024-07-10
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献CryoEM structure of the Nipah virus nucleocapsid assembly.
Plos Pathog., 17, 2021
8D0X
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Human FUT9 bound to LNnT
分子名称: 1,2-ETHANEDIOL, 4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase 9, GLYCEROL, ...
著者Kadirvelraj, R, Wood, Z.A.
登録日2022-05-26
公開日2023-05-24
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.33 Å)
主引用文献Structural basis for Lewis antigen synthesis by the alpha 1,3-fucosyltransferase FUT9.
Nat.Chem.Biol., 19, 2023
8D0P
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Human FUT9, unliganded
分子名称: 1,2-ETHANEDIOL, 4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase 9, SULFATE ION, ...
著者Kadirvelraj, R, Wood, Z.A.
登録日2022-05-26
公開日2023-05-24
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.09 Å)
主引用文献Structural basis for Lewis antigen synthesis by the alpha 1,3-fucosyltransferase FUT9.
Nat.Chem.Biol., 19, 2023
6NXB
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ECAII IN COMPLEX WITH CITRATE AT PH 7
分子名称: CITRIC ACID, GLYCEROL, L-asparaginase 2
著者Lubkowski, J, Wlodawer, A.
登録日2019-02-08
公開日2019-08-07
最終更新日2019-11-20
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Opportunistic complexes of E. coli L-asparaginases with citrate anions.
Sci Rep, 9, 2019
6YHS
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Acinetobacter baumannii ribosome-amikacin complex - 50S subunit
分子名称: 23S ribosomal RNA, 50S ribosomal protein L13, 50S ribosomal protein L14, ...
著者Nicholson, D, Edwards, T.A, O'Neill, A.J, Ranson, N.A.
登録日2020-03-30
公開日2020-09-16
最終更新日2024-05-22
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献Structure of the 70S Ribosome from the Human Pathogen Acinetobacter baumannii in Complex with Clinically Relevant Antibiotics.
Structure, 28, 2020
6QBZ
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Solution structure of the N-terminal domain of the Staphylococcus aureus Hibernation Promoting Factor
分子名称: Ribosome hibernation promoting factor
著者Usachev, K.S, Validov, S.Z, Khusainov, I.S, Klochkov, V.V, Aganov, A.V, Yusupov, M.M.
登録日2018-12-25
公開日2019-06-19
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Solution structure of the N-terminal domain of the Staphylococcus aureus hibernation promoting factor.
J.Biomol.Nmr, 73, 2019
7OW0
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1.55 A crystal structure of DNA/2'-O-methyl-RNA heteroduplex with overhangs solved by Zn-SAD.
分子名称: DNA (5'-D(*TP*CP*TP*CP*CP*TP*AP*GP*G)-3'), RNA (5'-R(*(OMC)P*(OMU)P*(A2M)P*(OMG)P*(OMG)P*(A2M)P*(OMG)P*(A2M)P*(OMC))-3'), ZINC ION
著者Dolot, R.M, Maciaszek, A, Nawrot, B.C.
登録日2021-06-15
公開日2021-07-14
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献First High-Resolution Crystal Structures of DNA:2'-O-Methyl-RNA Heteroduplexes
Crystals, 2022
6O13
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E. coli cysteine desulfurase SufS H123A with a Cys-ketimine intermediate
分子名称: CHLORIDE ION, Cys-ketimine, Cysteine desulfurase
著者Dunkle, J.A, Frantom, P.A.
登録日2019-02-17
公開日2019-07-03
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.203 Å)
主引用文献Direct observation of intermediates in the SufS cysteine desulfurase reaction reveals functional roles of conserved active-site residues.
J.Biol.Chem., 294, 2019
8D0S
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Human FUT9 bound to GDP and LNnT
分子名称: 1,2-ETHANEDIOL, 4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase 9, GUANOSINE-5'-DIPHOSPHATE, ...
著者Kadirvelraj, R, Wood, Z.A.
登録日2022-05-26
公開日2023-05-24
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.37 Å)
主引用文献Structural basis for Lewis antigen synthesis by the alpha 1,3-fucosyltransferase FUT9.
Nat.Chem.Biol., 19, 2023
7OXS
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1.91 A crystal structure of DNA/2'-O-methyl-RNA heteroduplex
分子名称: DNA (5'-D(*GP*TP*CP*TP*CP*CP*TP*AP*G)-3'), RNA (5'-R(*(OMC)P*(OMU)P*(A2M)P*(OMG)P*(OMG)P*(A2M)P*(OMG)P*(A2M)P*(OMC))-3'), SULFATE ION
著者Dolot, R.M, Maciaszek, A, Nawrot, B.C.
登録日2021-06-23
公開日2021-07-14
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.91 Å)
主引用文献First High-Resolution Crystal Structures of DNA:2'-O-Methyl-RNA Heteroduplexes
Crystals, 2022
6O28
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Crystal structure of 4493 Fab in complex with circumsporozoite protein KQPA and anti-kappa VHH domain
分子名称: 1,2-ETHANEDIOL, 4493 Fab heavy chain, 4493 Kappa light chain, ...
著者Scally, S.W, Bosch, A, Prieto, K, Murugan, R, Wardemann, H, Julien, J.P.
登録日2019-02-22
公開日2020-07-01
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.93 Å)
主引用文献Evolution of protective human antibodies against Plasmodium falciparum circumsporozoite protein repeat motifs.
Nat. Med., 26, 2020
8D0U
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Human FUT9 bound to GDP
分子名称: 1,2-ETHANEDIOL, 4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase 9, GUANOSINE-5'-DIPHOSPHATE, ...
著者Kadirvelraj, R, Wood, Z.A.
登録日2022-05-26
公開日2023-05-24
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.29 Å)
主引用文献Structural basis for Lewis antigen synthesis by the alpha 1,3-fucosyltransferase FUT9.
Nat.Chem.Biol., 19, 2023
8VAR
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BU of 8var by Molmil
Structure of the E. coli clamp loader bound to the beta clamp in a Closed-DNA2 conformation
分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Beta sliding clamp, ...
著者Landeck, J.T, Kelch, B.A.
登録日2023-12-11
公開日2024-03-27
最終更新日2024-05-01
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Differences between bacteria and eukaryotes in clamp loader mechanism, a conserved process underlying DNA replication.
J.Biol.Chem., 300, 2024
5LTY
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Homeobox transcription factor CDX2 bound to methylated DNA
分子名称: DNA (5'-D(P*GP*GP*AP*GP*GP*TP*(5CM)P*GP*TP*AP*AP*AP*AP*CP*AP*CP*AP*A)-3'), DNA (5'-D(P*TP*TP*GP*TP*GP*TP*TP*TP*TP*AP*(5CM)P*GP*AP*CP*CP*TP*CP*C)-3'), Homeobox protein CDX-2
著者Morgunova, E, Popov, A, Taipale, J.
登録日2016-09-07
公開日2017-05-31
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.66 Å)
主引用文献Impact of cytosine methylation on DNA binding specificities of human transcription factors.
Science, 356, 2017
8VAQ
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BU of 8vaq by Molmil
Structure of the E. coli clamp loader bound to the beta clamp in a Closed-DNA1 conformation
分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Beta sliding clamp, ...
著者Landeck, J.T, Kelch, B.A.
登録日2023-12-11
公開日2024-03-27
最終更新日2024-05-01
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Differences between bacteria and eukaryotes in clamp loader mechanism, a conserved process underlying DNA replication.
J.Biol.Chem., 300, 2024
8D0R
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BU of 8d0r by Molmil
Human FUT9 bound to GDP and H-Type 2
分子名称: 1,2-ETHANEDIOL, 4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase 9, GUANOSINE-5'-DIPHOSPHATE, ...
著者Kadirvelraj, R, Wood, Z.A.
登録日2022-05-26
公開日2023-05-24
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Structural basis for Lewis antigen synthesis by the alpha 1,3-fucosyltransferase FUT9.
Nat.Chem.Biol., 19, 2023
6PTT
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BU of 6ptt by Molmil
Soluble model of Arabidopsis thaliana CuA (Tt3LAt)
分子名称: Cytochrome c oxidase subunit 2, DINUCLEAR COPPER ION
著者Lisa, M.N, Giannini, E, Llases, M.E, Alzari, P.M, Vila, A.J.
登録日2019-07-16
公開日2019-11-20
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.84 Å)
主引用文献Unexpected electron spin density on the axial methionine ligand in CuAsuggests its involvement in electron pathways.
Chem.Commun.(Camb.), 56, 2020
8CYR
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BU of 8cyr by Molmil
Alpha-synuclein fibril from spontaneous control
分子名称: Alpha-synuclein
著者Zhou, Y, Sokratian, A, Xu, E, Viverette, E, Dillard, L, Yuan, Y, Li, J.Y, Matarangas, A, Bouvette, J, Borgnia, M, Bartesaghi, A, West, A.
登録日2022-05-24
公開日2023-05-31
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (4.2 Å)
主引用文献Distinct cryo-EM structures and functions of alpha-synuclein fibrils amplified from cerebrospinal fluid
To Be Published
6NS9
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Crystal structure of the IVR-165 (H3N2) influenza virus hemagglutinin apo form
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin HA1 chain, ...
著者Wu, N.C, Wilson, I.A.
登録日2019-01-24
公開日2019-04-24
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Preventing an Antigenically Disruptive Mutation in Egg-Based H3N2 Seasonal Influenza Vaccines by Mutational Incompatibility.
Cell Host Microbe, 25, 2019
8VAL
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BU of 8val by Molmil
Structure of the E. coli clamp loader bound to the beta clamp in a Open-DNAp/t conformation
分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Beta sliding clamp, ...
著者Landeck, J.T, Kelch, B.A.
登録日2023-12-11
公開日2024-03-27
最終更新日2024-05-01
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Differences between bacteria and eukaryotes in clamp loader mechanism, a conserved process underlying DNA replication.
J.Biol.Chem., 300, 2024
7BEA
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BU of 7bea by Molmil
Structure of human Programmed cell death 1 ligand 1 (PD-L1) with inhibitor
分子名称: 2-(aminomethyl)-6-[(2-methyl-3-phenyl-phenyl)methoxy]-~{N}-(2-phenylethyl)imidazo[1,2-a]pyridin-3-amine, Programmed cell death 1 ligand 1
著者Magiera-Mularz, K, Butera, R, Wazynska, M, Holak, T, Domling, A.
登録日2020-12-22
公開日2021-06-09
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献Design, Synthesis, and Biological Evaluation of Imidazopyridines as PD-1/PD-L1 Antagonists.
Acs Med.Chem.Lett., 12, 2021
8VSH
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BU of 8vsh by Molmil
Crystal structure of Shewanella benthica Group 1 truncated hemoglobin C51S C71S variant with trans heme D
分子名称: Group 1 truncated hemoglobin, {3-[(2R,5'R)-9',14'-diethenyl-5'-hydroxy-5',10',15',19'-tetramethyl-5-oxo-4,5-dihydro-3H-spiro[furan-2,4'-[21,22,23,24]tetraazapentacyclo[16.2.1.13,6.18,11.113,16]tetracosa[1,3(24),6,8,10,12,14,16(22),17,19]decaen]-20'-yl-kappa~4~N~21'~,N~22'~,N~23'~,N~24'~]propanoato}iron
著者Lecomte, J.T.J, Martinez, J.E, Schlessman, J.L, Schultz, T.D, Siegler, M.A.
登録日2024-01-24
公開日2024-04-03
最終更新日2024-07-17
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Heme d formation in a Shewanella benthica hemoglobin.
J.Inorg.Biochem., 259, 2024
6NX6
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ECAII(D90T,K162T) MUTANT IN COMPLEX WITH CITRATE AT PH 5
分子名称: ACETIC ACID, CITRIC ACID, L-asparaginase 2
著者Lubkowski, J, Wlodawer, A.
登録日2019-02-08
公開日2019-08-07
最終更新日2020-08-19
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Opportunistic complexes of E. coli L-asparaginases with citrate anions.
Sci Rep, 9, 2019
7U1Y
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Structure of SPAC806.04c protein from fission yeast bound to AlF4 and Co2+
分子名称: COBALT (II) ION, Damage-control phosphatase SPAC806.04c, POTASSIUM ION, ...
著者Jacewicz, A, Sanchez, A.M, Shuman, S.
登録日2022-02-22
公開日2022-06-01
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.81 Å)
主引用文献Fission yeast Duf89 and Duf8901 are cobalt/nickel-dependent phosphatase-pyrophosphatases that act via a covalent aspartyl-phosphate intermediate.
J.Biol.Chem., 298, 2022
6NXR
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Crystal structure of Arabidopsis thaliana cytosolic triosephosphate isomerase C13D mutant
分子名称: GLYCEROL, SODIUM ION, Triosephosphate isomerase, ...
著者Jimenez-Sandoval, P, Diaz-Quezada, C, Torres-Larios, A, Brieba, L.G.
登録日2019-02-09
公開日2020-02-19
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Structural basis for the modulation of plant cytosolic triosephosphate isomerase activity by mimicry of redox-based modifications.
Plant J., 99, 2019

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件を2024-07-31に公開中

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