Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 89472 件

3OIR
DownloadVisualize
BU of 3oir by Molmil
Crystal structure of sulfate transporter family protein from Wolinella succinogenes
分子名称: CHLORIDE ION, FORMIC ACID, SULFATE TRANSPORTER SULFATE TRANSPORTER FAMILY PROTEIN
著者Chang, C, Tesar, C, Bearden, J, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
登録日2010-08-19
公開日2010-09-08
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Crystal structure of sulfate transporter family protein from Wolinella succinogenes
To be Published
3ZKL
DownloadVisualize
BU of 3zkl by Molmil
Structure of the xylo-oligosaccharide specific solute binding protein from Bifidobacterium animalis subsp. lactis Bl-04 in complex with xylotriose
分子名称: PENTAETHYLENE GLYCOL, PUTATIVE SUGAR TRANSPORTER SOLUTE-BINDING PROTEIN, beta-D-xylopyranose-(1-4)-beta-D-xylopyranose-(1-4)-beta-D-xylopyranose
著者Ejby, M, Vujicic-Zagar, A, Fredslund, F, Svensson, B, Slotboom, D.J, Abou Hachem, M.
登録日2013-01-23
公開日2013-10-30
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (2.397 Å)
主引用文献Structural Basis for Arabinoxylo-Oligosaccharide Capture by the Probiotic Bifidobacterium Animalis Subsp. Lactis Bl-04
Mol.Microbiol., 90, 2013
5JVN
DownloadVisualize
BU of 5jvn by Molmil
C3-type pyruvate phosphate dikinase: intermediate state of the central domain in the swiveling mechanism
分子名称: 2'-Bromo-2'-deoxyadenosine 5'-[beta,gamma-imide]triphosphoric acid, MAGNESIUM ION, PHOSPHOENOLPYRUVATE, ...
著者Minges, A, Hoeppner, A, Groth, G.
登録日2016-05-11
公開日2017-04-05
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Structural intermediates and directionality of the swiveling motion of Pyruvate Phosphate Dikinase.
Sci Rep, 7, 2017
6I38
DownloadVisualize
BU of 6i38 by Molmil
Crystal structure of nv2Pizza6-AYW, a circularly permuted designer protein
分子名称: nv2Pizza6-AYW
著者Mylemans, B, Noguchi, H, Deridder, E, Voet, A.R.D.
登録日2018-11-05
公開日2019-11-20
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.58 Å)
主引用文献Influence of circular permutations on the structure and stability of a six-fold circular symmetric designer protein.
Protein Sci., 2020
8TXA
DownloadVisualize
BU of 8txa by Molmil
Apo Structure of (N1G37) tRNA Methyltransferase from Mycobacterium marinum
分子名称: tRNA (guanine-N(1)-)-methyltransferase
著者Balsamo, A, Bruno, C, Edele, C, Fabian, T, Jannotta, R, Lee, R, Schryver, D, Warsaw, J, Warsaw, L, Stojanoff, V, Battaile, K, Perez, A, Bolen, R.
登録日2023-08-23
公開日2024-04-10
実験手法X-RAY DIFFRACTION (1.591 Å)
主引用文献Apo Structure of (N1G37) tRNA Methyltransferase from Mycobacterium marinum
To Be Published
3OLN
DownloadVisualize
BU of 3oln by Molmil
Crystal structure of the SRA domain of E3 ubiquitin-protein ligase UHRF2
分子名称: E3 ubiquitin-protein ligase UHRF2
著者Walker, J.R, Xue, S, Avvakumov, G.V, Bountra, C, Weigelt, J, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A, Dhe-Paganon, S, Structural Genomics Consortium (SGC)
登録日2010-08-26
公開日2010-10-13
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献The Set and Ring Associated (SRA) domain of human ubiquitin-like containing PHD and RING finger domains 2 (UHRF2)
To be Published
4EIH
DownloadVisualize
BU of 4eih by Molmil
Crystal structure of Arg SH2 domain
分子名称: Abelson tyrosine-protein kinase 2, CHLORIDE ION
著者Liu, W, MacGrath, S.M, Koleske, A.J, Boggon, T.J.
登録日2012-04-05
公開日2013-04-10
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Two Amino Acid Residues Confer Different Binding Affinities of Abelson Family Kinase Src Homology 2 Domains for Phosphorylated Cortactin.
J.Biol.Chem., 289, 2014
1A0N
DownloadVisualize
BU of 1a0n by Molmil
NMR STUDY OF THE SH3 DOMAIN FROM FYN PROTO-ONCOGENE TYROSINE KINASE COMPLEXED WITH THE SYNTHETIC PEPTIDE P2L CORRESPONDING TO RESIDUES 91-104 OF THE P85 SUBUNIT OF PI3-KINASE, FAMILY OF 25 STRUCTURES
分子名称: FYN, PRO-PRO-ARG-PRO-LEU-PRO-VAL-ALA-PRO-GLY-SER-SER-LYS-THR
著者Renzoni, D.A, Pugh, D.J.R, Siligardi, G, Das, P, Morton, C.J, Rossi, C, Waterfield, M.D, Campbell, I.D, Ladbury, J.E.
登録日1997-12-05
公開日1998-02-25
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Structural and thermodynamic characterization of the interaction of the SH3 domain from Fyn with the proline-rich binding site on the p85 subunit of PI3-kinase.
Biochemistry, 35, 1996
5G4G
DownloadVisualize
BU of 5g4g by Molmil
Structure of the ATPgS-bound VAT complex
分子名称: VCP-LIKE ATPASE
著者Huang, R, Ripstein, Z.A, Augustyniak, R, Lazniewski, M, Ginalski, K, Kay, L.E, Rubinstein, J.L.
登録日2016-05-12
公開日2016-07-27
最終更新日2024-05-08
実験手法ELECTRON MICROSCOPY (7.8 Å)
主引用文献Unfolding the Mechanism of the Aaa+ Unfoldase Vat by a Combined Cryo-Em, Solution NMR Study.
Proc.Natl.Acad.Sci.USA, 113, 2016
5MGG
DownloadVisualize
BU of 5mgg by Molmil
Crystal Structure of BAZ2B bromodomain in complex with 4-chloropyridine derivative 3
分子名称: 4-chloranyl-~{N}-methyl-pyridine-2-carboxamide, Bromodomain adjacent to zinc finger domain protein 2B
著者Lolli, G, Spiliotopoulos, D, Caflisch, A.
登録日2016-11-21
公開日2017-04-12
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Discovery of BAZ2A bromodomain ligands.
Eur J Med Chem, 139, 2017
4EJW
DownloadVisualize
BU of 4ejw by Molmil
Staphylococcus epidermidis TcaR in complex with streptomycin
分子名称: STREPTOMYCIN, Transcriptional regulator TcaR
著者Chang, Y.M, Chen, C.K.M, Wang, A.H.J.
登録日2012-04-07
公開日2013-05-08
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structural analysis of the antibiotic recognition mechanism of MarR family proteins
Acta Crystallogr.,Sect.D, 2013
3ZUN
DownloadVisualize
BU of 3zun by Molmil
pVHL54-213-EloB-EloC complex_(2S,4R)-4-hydroxy-1-(2-(3-methylisoxazol- 5-yl)acetyl)-N-(4-nitrobenzyl)pyrrolidine-2-carboxamide bound
分子名称: (4R)-N-[4-(DIHYDROXYAMINO)BENZYL]-4-HYDROXY-1-[(3-METHYLISOXAZOL-5-YL)ACETYL]-L-PROLINAMIDE, GLYCEROL, TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 1, ...
著者Van Molle, I, Buckley, D, Crews, C.M, Ciulli, A.
登録日2011-07-19
公開日2012-07-25
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Elongin-B, Elongin-C, Von Hippel-Lindau Disease Tumor Suppressor Complex
To be Published
5MGL
DownloadVisualize
BU of 5mgl by Molmil
Crystal Structure of BAZ2A bromodomain in complex with 4-chloropyridine derivative 3
分子名称: 4-chloranyl-~{N}-methyl-pyridine-2-carboxamide, Bromodomain adjacent to zinc finger domain protein 2A
著者Lolli, G, Spiliotopoulos, D, Caflisch, A.
登録日2016-11-21
公開日2017-04-12
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.651 Å)
主引用文献Discovery of BAZ2A bromodomain ligands.
Eur J Med Chem, 139, 2017
2YLJ
DownloadVisualize
BU of 2ylj by Molmil
Horse Radish Peroxidase, mutant S167Y
分子名称: ACETATE ION, CALCIUM ION, PEROXIDASE C1A, ...
著者Roe, S.M, Al-Fartusie, F.S, Smith, A.T.
登録日2011-06-02
公開日2012-06-13
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.69 Å)
主引用文献Engineering and Characterisation of Novel Protein Covalent Linkages in Horseradish Peroxidase (Hrp): Effect on Structure and Function.
Ph D Thesis
3ZM0
DownloadVisualize
BU of 3zm0 by Molmil
Catalytic domain of human SHP2
分子名称: TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 11
著者Bohm, K, Schuetz, A, Roske, Y, Heinemann, U.
登録日2013-02-04
公開日2014-04-23
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Selective Inhibitors of the Protein Tyrosine Phosphatase Shp2 Block Cellular Motility and Growth of Cancer Cells in Vitro and in Vivo.
Chemmedchem, 10, 2015
5GHL
DownloadVisualize
BU of 5ghl by Molmil
Crystal structure Analysis of the starch-binding domain of glucoamylase from Aspergillus niger
分子名称: GLYCEROL, Glucoamylase, SULFATE ION
著者Miyake, H, Suyama, Y, Muraki, N, Kusunoki, M, Tanaka, A.
登録日2016-06-20
公開日2017-10-18
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of the starch-binding domain of glucoamylase from Aspergillus niger.
Acta Crystallogr.,Sect.F, 73, 2017
8DTX
DownloadVisualize
BU of 8dtx by Molmil
Crystal structure of SARS-CoV-2 spike stem helix peptide in complex with neutralizing antibody COV89-22
分子名称: COV89-22 heavy chain, COV89-22 light chain, Spike protein S2' stem helix peptide
著者Lin, T.H, Lee, C.C.D, Wilson, I.A.
登録日2022-07-26
公開日2022-11-23
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Rare, convergent antibodies targeting the stem helix broadly neutralize diverse betacoronaviruses.
Cell Host Microbe, 31, 2023
5K0Z
DownloadVisualize
BU of 5k0z by Molmil
Cryo-EM structure of lactate dehydrogenase (LDH) in inhibitor-bound state
分子名称: L-lactate dehydrogenase B chain
著者Merk, A, Bartesaghi, A, Banerjee, S, Falconieri, V, Rao, P, Earl, L, Milne, J, Subramaniam, S.
登録日2016-05-17
公開日2016-06-08
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Breaking Cryo-EM Resolution Barriers to Facilitate Drug Discovery.
Cell, 165, 2016
6UV4
DownloadVisualize
BU of 6uv4 by Molmil
Crystal structure of the core domain of RNA helicase DDX17 with RNA pri-18a-oligo1
分子名称: 18a_oligo1, ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, ...
著者Ngo, T.D, Partin, A.C, Nam, Y.
登録日2019-11-01
公開日2020-01-01
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献RNA Specificity and Autoregulation of DDX17, a Modulator of MicroRNA Biogenesis.
Cell Rep, 29, 2019
8DYS
DownloadVisualize
BU of 8dys by Molmil
Crystal structure of human Eukaryotic translation initiation factor 2A (eIF2A)
分子名称: 1,2-ETHANEDIOL, Eukaryotic translation initiation factor 2A, GLYCEROL, ...
著者Righetto, G.L, Zeng, H, Dong, A, Li, Y, Hutchinson, A, Seitova, A, Arrowsmith, C.H, Edwards, A.M, Halabelian, L, Structural Genomics Consortium (SGC)
登録日2022-08-05
公開日2022-08-17
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of human Eukaryotic translation initiation factor 2A (eIF2A)
To Be Published
5O9I
DownloadVisualize
BU of 5o9i by Molmil
Crystal structure of transcription factor IIB Mvu mini-intein
分子名称: Transcription initiation factor IIB,Transcription initiation factor IIB
著者Mikula, K.M, Iwai, H, Li, M, Wlodawer, A.
登録日2017-06-19
公開日2017-11-01
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural Basis for the Persistence of Homing Endonucleases in Transcription Factor IIB Inteins.
J. Mol. Biol., 429, 2017
5K3O
DownloadVisualize
BU of 5k3o by Molmil
Wolinella succinogenes L-asparaginase P121 and L-Aspartic acid
分子名称: ASPARTIC ACID, L-asparaginase
著者Nguyen, H.A, Lave, A.
登録日2016-05-19
公開日2017-03-29
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.696 Å)
主引用文献The differential ability of asparagine and glutamine in promoting the closed/active enzyme conformation rationalizes the Wolinella succinogenes L-asparaginase substrate specificity.
Sci Rep, 7, 2017
5K45
DownloadVisualize
BU of 5k45 by Molmil
Wolinella succinogenes L-asparaginase P121 + L-Glutamic acid
分子名称: GLUTAMIC ACID, L-asparaginase
著者Nguyen, H.A, Lave, A.
登録日2016-05-20
公開日2017-03-29
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.63 Å)
主引用文献The differential ability of asparagine and glutamine in promoting the closed/active enzyme conformation rationalizes the Wolinella succinogenes L-asparaginase substrate specificity.
Sci Rep, 7, 2017
1AE2
DownloadVisualize
BU of 1ae2 by Molmil
MUTANT L32R OF GENE V PROTEIN (SINGLE-STRANDED DNA BINDING PROTEIN)
分子名称: GENE V PROTEIN
著者Su, S, Gao, Y.-G, Zhang, H, Terwilliger, T.C, Wang, A.H.-J.
登録日1997-03-04
公開日1997-09-04
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Analyses of the stability and function of three surface mutants (R82C, K69H, and L32R) of the gene V protein from Ff phage by X-ray crystallography.
Protein Sci., 6, 1997
8DTR
DownloadVisualize
BU of 8dtr by Molmil
Crystal structure of SARS-CoV-2 spike stem helix peptide in complex with neutralizing antibody COV30-14
分子名称: COV30-14 heavy chain, COV30-14 light chain, Spike protein S2' stem helix peptide
著者Lee, C.C.D, Lin, T.H, Wilson, I.A.
登録日2022-07-26
公開日2022-11-23
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Rare, convergent antibodies targeting the stem helix broadly neutralize diverse betacoronaviruses.
Cell Host Microbe, 31, 2023

226262

件を2024-10-16に公開中

PDB statisticsPDBj update infoContact PDBjnumon