1BYJ
| GENTAMICIN C1A A-SITE COMPLEX | 分子名称: | 2,6-diamino-2,3,4,6-tetradeoxy-alpha-D-erythro-hexopyranose, 3,5-DIAMINO-CYCLOHEXANOL, 3-deoxy-4-C-methyl-3-(methylamino)-beta-L-arabinopyranose, ... | 著者 | Yoshizawa, S, Fourmy, D, Puglisi, J.D. | 登録日 | 1998-10-16 | 公開日 | 1999-10-29 | 最終更新日 | 2023-12-27 | 実験手法 | SOLUTION NMR | 主引用文献 | Structural origins of gentamicin antibiotic action. EMBO J., 17, 1998
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1WSU
| C-terminal domain of elongation factor selB complexed with SECIS RNA | 分子名称: | 5'-R(*GP*GP*CP*GP*UP*UP*GP*CP*CP*GP*GP*UP*CP*U*GP*GP*CP*AP*AP*CP*GP*CP*C)-3', Selenocysteine-specific elongation factor | 著者 | Yoshizawa, S, Rasubala, L, Ose, T, Kohda, D, Fourmy, D, Maenaka, K. | 登録日 | 2004-11-11 | 公開日 | 2005-01-25 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | Structural basis for mRNA recognition by elongation factor SelB Nat.Struct.Mol.Biol., 12, 2005
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1A3M
| PAROMOMYCIN BINDING INDUCES A LOCAL CONFORMATIONAL CHANGE IN THE A SITE OF 16S RRNA, NMR, 20 STRUCTURES | 分子名称: | 16S RRNA (5'-R(*GP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*UP*UP*C)-3'), 16S RRNA (5'-R(*GP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*CP*C)-3') | 著者 | Fourmy, D, Yoshizawa, S, Puglisi, J.D. | 登録日 | 1998-01-22 | 公開日 | 1998-04-29 | 最終更新日 | 2022-02-16 | 実験手法 | SOLUTION NMR | 主引用文献 | Paromomycin binding induces a local conformational change in the A-site of 16 S rRNA. J.Mol.Biol., 277, 1998
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1MT4
| Structure of 23S ribosomal RNA hairpin 35 | 分子名称: | 23S ribosomal Hairpin 35 | 著者 | Lebars, I, Yoshizawa, S, Stenholm, A.R, Guittet, E, Douthwaite, S, Fourmy, D. | 登録日 | 2002-09-20 | 公開日 | 2003-01-14 | 最終更新日 | 2022-02-23 | 実験手法 | SOLUTION NMR | 主引用文献 | Structure of 23S rRNA hairpin 35 and its interaction with the tylosin-resistance methyltransferase RlmAII Embo J., 22, 2003
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2PLY
| Structure of the mRNA binding fragment of elongation factor SelB in complex with SECIS RNA. | 分子名称: | CALCIUM ION, CHLORIDE ION, MAGNESIUM ION, ... | 著者 | Soler, N, Fourmy, D, Yoshizawa, S. | 登録日 | 2007-04-20 | 公開日 | 2007-11-06 | 最終更新日 | 2023-08-30 | 実験手法 | X-RAY DIFFRACTION (2.6 Å) | 主引用文献 | Structural insight into a molecular switch in tandem winged-helix motifs from elongation factor SelB. J.Mol.Biol., 370, 2007
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2PJP
| Structure of the mRNA-binding domain of elongation factor SelB from E.coli in complex with SECIS RNA | 分子名称: | CALCIUM ION, CHLORIDE ION, MAGNESIUM ION, ... | 著者 | Soler, N, Fourmy, D, Yoshizawa, S. | 登録日 | 2007-04-16 | 公開日 | 2007-10-30 | 最終更新日 | 2023-08-30 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | Structural insight into a molecular switch in tandem winged-helix motifs from elongation factor SelB. J.Mol.Biol., 370, 2007
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2GV3
| Translocation of a tRNA with an extended anticodon through the ribosome | 分子名称: | 5'-R(*GP*GP*CP*CP*AP*GP*AP*CP*UP*CP*CP*CP*GP*AP*AP*UP*CP*UP*GP*GP*CP*C)-3' | 著者 | Phelps, S.S, Gaudin, C, Yoshizawa, S, Benitez, C, Fourmy, D, Joseph, S. | 登録日 | 2006-05-02 | 公開日 | 2006-08-08 | 最終更新日 | 2022-03-09 | 実験手法 | SOLUTION NMR | 主引用文献 | Translocation of a tRNA with an Extended Anticodon Through the Ribosome. J.Mol.Biol., 360, 2006
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1ZC5
| Structure of the RNA signal essential for translational frameshifting in HIV-1 | 分子名称: | HIV-1 frameshift RNA signal | 著者 | Gaudin, C, Mazauric, M.H, Traikia, M, Guittet, E, Yoshizawa, S, Fourmy, D. | 登録日 | 2005-04-11 | 公開日 | 2005-06-07 | 最終更新日 | 2022-03-02 | 実験手法 | SOLUTION NMR | 主引用文献 | Structure of the RNA Signal Essential for Translational Frameshifting in HIV-1 J.Mol.Biol., 349, 2005
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1K6H
| Solution Structure of Conserved AGNN Tetraloops: Insights into Rnt1p RNA processing | 分子名称: | RNA (5'-R(P*GP*GP*CP*GP*UP*GP*UP*UP*CP*AP*GP*AP*AP*GP*AP*AP*CP*GP*CP*GP*CP*C)-3') | 著者 | Lebars, I, Lamontagne, B, Yoshizawa, S, Abou Elela, S, Fourmy, D. | 登録日 | 2001-10-16 | 公開日 | 2001-12-19 | 最終更新日 | 2022-02-23 | 実験手法 | SOLUTION NMR | 主引用文献 | Solution structure of conserved AGNN tetraloops: insights into Rnt1p RNA processing. EMBO J., 20, 2001
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1K6G
| Solution Structure of Conserved AGNN Tetraloops: Insights into Rnt1p RNA Processing | 分子名称: | RNA (5'-R(P*GP*GP*CP*GP*UP*CP*AP*UP*GP*AP*GP*UP*CP*CP*AP*UP*GP*GP*CP*GP*CP*C)-3') | 著者 | Lebars, I, Lamontagne, B, Yoshizawa, S, Abou Elela, S, Fourmy, D. | 登録日 | 2001-10-16 | 公開日 | 2001-12-19 | 最終更新日 | 2022-02-23 | 実験手法 | SOLUTION NMR | 主引用文献 | Solution structure of conserved AGNN tetraloops: insights into Rnt1p RNA processing. EMBO J., 20, 2001
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2HNS
| Structure of the AAGU tetraloop | 分子名称: | 5'-R(*GP*GP*CP*GP*UP*GP*AP*UP*CP*AP*AP*GP*UP*GP*AP*UP*CP*GP*CP*GP*CP*C)-3' | 著者 | Gaudin, C, Fourmy, F, Yoshizawa, S. | 登録日 | 2006-07-13 | 公開日 | 2006-10-31 | 最終更新日 | 2022-03-09 | 実験手法 | SOLUTION NMR | 主引用文献 | Structure of an AAGU Tetraloop and its Contribution to Substrate Selection by yeast RNase III. J.Mol.Biol., 363, 2006
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1MFK
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2UWM
| C-TERMINAL DOMAIN(WH2-WH4) OF ELONGATION FACTOR SELB IN COMPLEX WITH SECIS RNA | 分子名称: | 5'-R(*GP*GP*CP*GP*UP*UP*GP*CP*CP*GP *GP*UP*CP*UP*GP*GP*CP*AP*AP*CP*GP*CP*C)-3', SELENOCYSTEINE-SPECIFIC ELONGATION FACTOR | 著者 | Ose, T, Soler, N, Rasubala, L, Kuroki, K, Kohda, D, Fourmy, D, Yoshizawa, S, Maenaka, K. | 登録日 | 2007-03-22 | 公開日 | 2007-05-08 | 最終更新日 | 2023-12-13 | 実験手法 | X-RAY DIFFRACTION (2.31 Å) | 主引用文献 | Structural Basis for Dynamic Interdomain Movement and RNA Recognition of the Selenocysteine-Specific Elongation Factor Selb. Structure, 15, 2007
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3X3B
| Crystal structure of the light-driven sodium pump KR2 in acidic state | 分子名称: | DI(HYDROXYETHYL)ETHER, OLEIC ACID, RETINAL, ... | 著者 | Kato, H.E, Inoue, K, Abe-Yoshizumi, R, Kato, Y, Ono, H, Konno, M, Ishizuka, T, Hoque, M.R, Hososhima, S, Kunitomo, H, Ito, J, Yoshizawa, S, Yamashita, K, Takemoto, M, Nishizawa, T, Taniguchi, R, Kogure, K, Maturana, A.D, Iino, Y, Yawo, H, Ishitani, R, Kandori, H, Nureki, O. | 登録日 | 2015-01-18 | 公開日 | 2015-04-08 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | Structural basis for Na(+) transport mechanism by a light-driven Na(+) pump Nature, 521, 2015
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3X3C
| Crystal structure of the light-driven sodium pump KR2 in neutral state | 分子名称: | OLEIC ACID, RETINAL, Sodium pumping rhodopsin | 著者 | Kato, H.E, Inoue, K, Abe-Yoshizumi, R, Kato, Y, Ono, H, Konno, M, Ishizuka, T, Hoque, M.R, Hososhima, S, Kunitomo, H, Ito, J, Yoshizawa, S, Yamashita, K, Takemoto, M, Nishizawa, T, Taniguchi, R, Kogure, K, Maturana, A.D, Iino, Y, Yawo, H, Ishitani, R, Kandori, H, Nureki, O. | 登録日 | 2015-01-18 | 公開日 | 2015-04-08 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | Structural basis for Na(+) transport mechanism by a light-driven Na(+) pump Nature, 521, 2015
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7VGT
| Time-resolved serial femtosecond crystallography structure of light-driven chloride ion-pumping rhodopsin, NM-R3: resting state structure with bromide ion | 分子名称: | BROMIDE ION, Chloride pumping rhodopsin, DECANE, ... | 著者 | Hosaka, T, Nango, E, Nakane, T, Luo, F, Kimura-Someya, T, Shirouzu, M. | 登録日 | 2021-09-18 | 公開日 | 2022-02-16 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | 主引用文献 | Conformational alterations in unidirectional ion transport of a light-driven chloride pump revealed using X-ray free electron lasers. Proc.Natl.Acad.Sci.USA, 119, 2022
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7VGV
| Anion free form of light-driven chloride ion-pumping rhodopsin, NM-R3, structure determined by serial femtosecond crystallography at SACLA | 分子名称: | CHLORIDE ION, Chloride pumping rhodopsin, HEXADECANE, ... | 著者 | Hosaka, T, Nango, E, Nakane, T, Luo, F, Kimura-Someya, T, Shirouzu, M. | 登録日 | 2021-09-18 | 公開日 | 2022-02-16 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | Conformational alterations in unidirectional ion transport of a light-driven chloride pump revealed using X-ray free electron lasers. Proc.Natl.Acad.Sci.USA, 119, 2022
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7VGU
| Time-resolved serial femtosecond crystallography structure of light-driven chloride ion-pumping rhodopsin, NM-R3 : structure obtained 1 msec after photoexcitation with bromide ion | 分子名称: | BROMIDE ION, Chloride pumping rhodopsin, DECANE, ... | 著者 | Hosaka, T, Nango, E, Nakane, T, Luo, F, Kimura-Someya, T, Shirouzu, M. | 登録日 | 2021-09-18 | 公開日 | 2022-02-16 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | 主引用文献 | Conformational alterations in unidirectional ion transport of a light-driven chloride pump revealed using X-ray free electron lasers. Proc.Natl.Acad.Sci.USA, 119, 2022
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7YTB
| Crystal structure of Kin4B8 | 分子名称: | (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Kin4B8, RETINAL | 著者 | Murakoshi, S, Chazan, A, Shihoya, W, Beja, O, Nureki, O. | 登録日 | 2022-08-14 | 公開日 | 2023-03-15 | 最終更新日 | 2023-03-29 | 実験手法 | X-RAY DIFFRACTION (3 Å) | 主引用文献 | Phototrophy by antenna-containing rhodopsin pumps in aquatic environments. Nature, 615, 2023
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8I2Z
| Cryo-EM structure of the zeaxanthin-bound kin4B8 | 分子名称: | RETINAL, Xanthorhodopsin, Zeaxanthin | 著者 | Murakoshi, S, Chazan, A, Shihoya, W, Beja, O, Nureki, O. | 登録日 | 2023-01-15 | 公開日 | 2023-03-29 | 最終更新日 | 2023-04-19 | 実験手法 | ELECTRON MICROSCOPY (2 Å) | 主引用文献 | Phototrophy by antenna-containing rhodopsin pumps in aquatic environments. Nature, 615, 2023
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5B2N
| Crystal structure of the light-driven chloride ion-pumping rhodopsin, ClP, from Nonlabens marinus | 分子名称: | CHLORIDE ION, Chloride pumping rhodopsin, DECANE, ... | 著者 | Hosaka, T, Kimura-Someya, T, Shirouzu, M. | 登録日 | 2016-01-20 | 公開日 | 2016-07-13 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.581 Å) | 主引用文献 | Structural Mechanism for Light-driven Transport by a New Type of Chloride Ion Pump, Nonlabens marinus Rhodopsin-3 J.Biol.Chem., 291, 2016
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8H79
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6JO0
| Crystal structure of the DTS-motif rhodopsin from Phaeocystis globosa virus 12T | 分子名称: | (2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, DECANE, DODECANE, ... | 著者 | Hosaka, T, Kimura-Someya, T, Shirouzu, M. | 登録日 | 2019-03-19 | 公開日 | 2019-10-02 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.651 Å) | 主引用文献 | A distinct lineage of giant viruses brings a rhodopsin photosystem to unicellular marine predators. Proc.Natl.Acad.Sci.USA, 116, 2019
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6LM0
| The crystal structure of cyanorhodopsin (CyR) N2098R from cyanobacteria Calothrix sp. NIES-2098 | 分子名称: | DECANE, HEXANE, N-OCTANE, ... | 著者 | Hosaka, T, Kimura-Someya, T, Shirouzu, M. | 登録日 | 2019-12-24 | 公開日 | 2020-10-21 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.65 Å) | 主引用文献 | A unique clade of light-driven proton-pumping rhodopsins evolved in the cyanobacterial lineage. Sci Rep, 10, 2020
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6LM1
| The crystal structure of cyanorhodopsin (CyR) N4075R from cyanobacteria Tolypothrix sp. NIES-4075 | 分子名称: | DECANE, DODECANE, HEXADECANE, ... | 著者 | Hosaka, T, Kimura-Someya, T, Shirouzu, M. | 登録日 | 2019-12-24 | 公開日 | 2020-10-21 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | 主引用文献 | A unique clade of light-driven proton-pumping rhodopsins evolved in the cyanobacterial lineage. Sci Rep, 10, 2020
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