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2Z3Z
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BU of 2z3z by Molmil
Prolyl tripeptidyl aminopeptidase mutant E636A complexd with an inhibitor
分子名称: Dipeptidyl aminopeptidase IV, SULFATE ION, [(2R)-1-(L-ALANYL-L-ISOLEUCYL)PYRROLIDIN-2-YL]BORONIC ACID
著者Xu, Y, Nakajima, Y, Ito, K, Yoshimoto, T.
登録日2007-06-09
公開日2008-02-19
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Novel inhibitor for prolyl tripeptidyl aminopeptidase from Porphyromonas gingivalis and details of substrate-recognition mechanism
J.Mol.Biol., 375, 2008
1NH5
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BU of 1nh5 by Molmil
AUTOMATIC ASSIGNMENT OF NMR DATA AND DETERMINATION OF THE PROTEIN STRUCTURE OF A NEW WORLD SCORPION NEUROTOXIN USING NOAH/DIAMOD
分子名称: Neurotoxin 5
著者Xu, Y, Jablonsky, M.J, Jackson, P.L, Krishna, N.R, Braun, W.
登録日2002-12-18
公開日2003-01-07
最終更新日2018-01-24
実験手法SOLUTION NMR
主引用文献Automatic assignment of NOESY Cross peaks and determination of the protein structure of a new world scorpion neurotoxin Using NOAH/DIAMOD
J.Magn.Reson., 148, 2001
3BOB
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BU of 3bob by Molmil
Carbonic anhydrase from marine diatom Thalassiosira weissflogii- cadmium bound domain 2
分子名称: CADMIUM ION, Cadmium-specific carbonic anhydrase
著者Xu, Y, Feng, L, Jeffrey, P.D, Shi, Y, Morel, F.M.M.
登録日2007-12-17
公開日2008-01-22
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Structure and metal exchange in the cadmium carbonic anhydrase of marine diatoms.
Nature, 452, 2008
3BOC
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BU of 3boc by Molmil
Carbonic anhydrase from marine diatom Thalassiosira weissflogii- zinc bound domain 2 (CDCA1-R2)
分子名称: Cadmium-specific carbonic anhydrase, ZINC ION
著者Xu, Y, Feng, L, Jeffrey, P.D, Shi, Y, Morel, F.M.M.
登録日2007-12-17
公開日2008-01-22
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structure and metal exchange in the cadmium carbonic anhydrase of marine diatoms.
Nature, 452, 2008
3BOE
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BU of 3boe by Molmil
Carbonic anhydrase from marine diatom Thalassiosira weissflogii- cadmium bound domain 2 with acetate (CDCA1-R2)
分子名称: ACETATE ION, CADMIUM ION, Cadmium-specific carbonic anhydrase
著者Xu, Y, Feng, L, Jeffrey, P.D, Shi, Y, Morel, F.M.M.
登録日2007-12-17
公開日2008-01-22
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Structure and metal exchange in the cadmium carbonic anhydrase of marine diatoms.
Nature, 452, 2008
3BOJ
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BU of 3boj by Molmil
Carbonic anhydrase from marine diatom Thalassiosira weissflogii- cadmium bound domain 1 without bound metal (CDCA1-R1)
分子名称: ACETATE ION, Cadmium-specific carbonic anhydrase
著者Xu, Y, Feng, L, Jeffrey, P.D, Shi, Y, Morel, F.M.M.
登録日2007-12-17
公開日2008-01-22
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Structure and metal exchange in the cadmium carbonic anhydrase of marine diatoms.
Nature, 452, 2008
3BOH
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BU of 3boh by Molmil
Carbonic anhydrase from marine diatom Thalassiosira weissflogii- cadmium bound domain 1 with acetate (CDCA1-R1)
分子名称: ACETATE ION, CADMIUM ION, Cadmium-specific carbonic anhydrase
著者Xu, Y, Feng, L, Jeffrey, P.D, Shi, Y, Morel, F.M.M.
登録日2007-12-17
公開日2008-01-22
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structure and metal exchange in the cadmium carbonic anhydrase of marine diatoms.
Nature, 452, 2008
2EEP
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BU of 2eep by Molmil
Prolyl Tripeptidyl Aminopeptidase Complexed with an Inhibitor
分子名称: Dipeptidyl aminopeptidase IV, putative, SULFATE ION, ...
著者Xu, Y, Nakajima, Y, Ito, K, Yoshimoto, T.
登録日2007-02-16
公開日2008-02-19
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Novel inhibitor for prolyl tripeptidyl aminopeptidase from Porphyromonas gingivalis and details of substrate-recognition mechanism
J.Mol.Biol., 375, 2008
2H25
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BU of 2h25 by Molmil
Solution Structure of Maltose Binding Protein complexed with beta-cyclodextrin
分子名称: Maltose-binding periplasmic protein
著者Xu, Y, Lin, Z, Zheng, Y, Yang, D.
登録日2006-05-18
公開日2006-10-31
最終更新日2022-03-09
実験手法SOLUTION NMR
主引用文献A new strategy for structure determination of large proteins in solution without deuteration
Nat.Methods, 3, 2006
1QR6
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BU of 1qr6 by Molmil
HUMAN MITOCHONDRIAL NAD(P)-DEPENDENT MALIC ENZYME
分子名称: MALIC ENZYME 2, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
著者Xu, Y, Bhargava, G, Wu, H, Loeber, G, Tong, L.
登録日1999-06-18
公開日1999-07-05
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structure of human mitochondrial NAD(P)(+)-dependent malic enzyme: a new class of oxidative decarboxylases.
Structure, 7, 1999
7S8V
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BU of 7s8v by Molmil
Leg region of a complex of IGF-I with the ectodomain of a hybrid insulin receptor / type 1 insulin-like growth factor receptor
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Insulin receptor, ...
著者Xu, Y, Lawrence, M.C.
登録日2021-09-20
公開日2022-07-06
最終更新日2022-08-17
実験手法ELECTRON MICROSCOPY (3.73 Å)
主引用文献How insulin-like growth factor I binds to a hybrid insulin receptor type 1 insulin-like growth factor receptor.
Structure, 30, 2022
7S0Q
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BU of 7s0q by Molmil
Head region of a complex of IGF-I with the ectodomain of a hybrid insulin receptor / type 1 insulin-like growth factor receptor
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Insulin receptor, ...
著者Xu, Y, Lawrence, M.C.
登録日2021-08-30
公開日2022-07-06
最終更新日2022-08-17
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献How insulin-like growth factor I binds to a hybrid insulin receptor type 1 insulin-like growth factor receptor.
Structure, 30, 2022
1QY7
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BU of 1qy7 by Molmil
The structure of the PII protein from the cyanobacteria Synechococcus sp. PCC 7942
分子名称: NICKEL (II) ION, Nitrogen regulatory protein P-II, SULFATE ION
著者Xu, Y, Carr, P.D, Clancy, P, Garcia-Dominguez, M, Forchhammer, K, Florencio, F, Tandeau de Marsac, N, Vasudevan, S.G, Ollis, D.L.
登録日2003-09-09
公開日2003-09-23
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献The structures of the PII proteins from the cyanobacteria Synechococcus sp. PCC 7942 and Synechocystis sp. PCC 6803.
Acta Crystallogr.,Sect.D, 59, 2003
1U9I
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BU of 1u9i by Molmil
Crystal Structure of Circadian Clock Protein KaiC with Phosphorylation Sites
分子名称: ADENOSINE-5'-TRIPHOSPHATE, KaiC, MAGNESIUM ION
著者Xu, Y, Mori, T, Pattanayek, R, Pattanayek, S, Egli, M, Johnson, C.H.
登録日2004-08-09
公開日2005-04-19
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Identification of key phosphorylation sites in the circadian clock protein KaiC by crystallographic and mutagenetic analyses
PROC.NATL.ACAD.SCI.USA, 101, 2004
1UL3
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BU of 1ul3 by Molmil
Crystal Structure of PII from Synechocystis sp. PCC 6803
分子名称: CALCIUM ION, GLYCEROL, Nitrogen regulatory protein P-II
著者Xu, Y, Carr, P.D, Clancy, P, Garcia-Dominguez, M, Forchhammer, K, Florencio, F, Tandeau de Marsac, N, Vasudevan, S.G, Ollis, D.L.
登録日2003-09-09
公開日2003-12-16
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献The structures of the PII proteins from the cyanobacteria Synechococcus sp. PCC 7942 and Synechocystis sp. PCC 6803.
Acta Crystallogr.,Sect.D, 59, 2003
1V4A
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BU of 1v4a by Molmil
Structure of the N-terminal Domain of Escherichia coli Glutamine Synthetase adenylyltransferase
分子名称: Glutamate-ammonia-ligase adenylyltransferase
著者Xu, Y, Zhang, R, Joachimiak, A, Carr, P.D, Ollis, D.L, Vasudevan, S.G.
登録日2003-11-12
公開日2004-07-27
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure of the n-terminal domain of Escherichia coli glutamine synthetase adenylyltransferase
Structure, 12, 2004
1UX4
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BU of 1ux4 by Molmil
Crystal structures of a Formin Homology-2 domain reveal a tethered-dimer architecture
分子名称: BNI1 PROTEIN
著者Xu, Y, Moseley, J.B, Sagot, I, Poy, F, Pellman, D, Goode, B.L, Eck, M.J.
登録日2004-02-19
公開日2004-03-11
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Crystal Structures of a Formin Homology-2 Domain Reveal a Tethered Dimer Architecture
Cell(Cambridge,Mass.), 116, 2004
1UX5
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Crystal Structures of a Formin Homology-2 domain reveal a flexibly tethered dimer architecture
分子名称: BNI1 PROTEIN
著者Xu, Y, Moseley, J.B, Sagot, I, Poy, F, Pellman, D, Goode, B.L, Eck, M.J.
登録日2004-02-19
公開日2004-03-11
最終更新日2019-05-08
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal Structures of a Formin Homology-2 Domain Reveal a Tethered Dimer Architecture
Cell(Cambridge,Mass.), 116, 2004
1WDF
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BU of 1wdf by Molmil
crystal structure of MHV spike protein fusion core
分子名称: E2 glycoprotein
著者Xu, Y, Liu, Y, Lou, Z, Qin, L, Li, X, Bai, Z, Tien, P, Gao, G.F, Rao, Z.
登録日2004-05-14
公開日2004-06-15
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural Basis for Coronavirus-mediated Membrane Fusion: CRYSTAL STRUCTURE OF MOUSE HEPATITIS VIRUS SPIKE PROTEIN FUSION CORE
J.Biol.Chem., 279, 2004
1WDG
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BU of 1wdg by Molmil
crystal structure of MHV spike protein fusion core
分子名称: E2 glycoprotein
著者Xu, Y, Liu, Y, Lou, Z, Qin, L, Li, X, Bai, Z, Tien, P, Gao, G.F, Rao, Z.
登録日2004-05-14
公開日2004-06-15
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.06 Å)
主引用文献Structural Basis for Coronavirus-mediated Membrane Fusion: CRYSTAL STRUCTURE OF MOUSE HEPATITIS VIRUS SPIKE PROTEIN FUSION CORE
J.Biol.Chem., 279, 2004
1WP7
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BU of 1wp7 by Molmil
crystal structure of Nipah Virus fusion core
分子名称: fusion protein
著者Xu, Y, Liu, Y, Lou, Z, Su, N, Bai, Z, Gao, G.F, Rao, Z.
登録日2004-08-31
公開日2005-11-15
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of Nipah Virus fusion core
To be Published
1WNC
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BU of 1wnc by Molmil
Crystal structure of the SARS-CoV Spike protein fusion core
分子名称: E2 glycoprotein
著者Xu, Y, Lou, Z, Liu, Y, Pang, H, Tien, P, Gao, G.F, Rao, Z.
登録日2004-07-29
公開日2004-09-07
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal structure of severe acute respiratory syndrome coronavirus spike protein fusion core
J.Biol.Chem., 279, 2004
5B7N
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Crystal structure of periplasmic 5-methylthioadenosine/S-adenosylhomocysteine nucleosidase from Aeromonas hydrophila
分子名称: GLYCEROL, MTA/SAH nucleosidase, S-ADENOSYL-L-HOMOCYSTEINE
著者Xu, Y.
登録日2016-06-08
公開日2016-12-21
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.399 Å)
主引用文献Structural and Functional Analyses of Periplasmic 5'-Methylthioadenosine/S-Adenosylhomocysteine Nucleosidase from Aeromonas hydrophila.
Biochemistry, 56, 2017
5B7P
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Structures and functional analysis of periplasmic 5-methylthioadenosine/S-adenosylhomocysteine nucleosidase from Aeromonas hydrophila
分子名称: 5'-DEOXY-5'-METHYLTHIOADENOSINE, MTA/SAH nucleosidase
著者Xu, Y.
登録日2016-06-08
公開日2016-12-14
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.49 Å)
主引用文献Structural and Functional Analyses of Periplasmic 5'-Methylthioadenosine/S-Adenosylhomocysteine Nucleosidase from Aeromonas hydrophila.
Biochemistry, 56, 2017
5B7G
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Structures and functional analysis of periplasmic 5-methylthioadenosine/S-adenosylhomocysteine nucleosidase from Aeromonas hydrophila
分子名称: ADENINE, GLYCEROL, MTA/SAH nucleosidase
著者Xu, Y.
登録日2016-06-07
公開日2017-01-25
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.399 Å)
主引用文献Structural and Functional Analyses of Periplasmic 5'-Methylthioadenosine/S-Adenosylhomocysteine Nucleosidase from Aeromonas hydrophila.
Biochemistry, 56, 2017

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