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3M4Y
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BU of 3m4y by Molmil
Structural characterization of the subunit A mutant P235A of the A-ATP synthase
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETIC ACID, ...
著者Manimekalai, M.S, Balakrishna, A.M, Kumar, A, Priya, R, Biukovic, G, Jeyakanthan, J, Gruber, G.
登録日2010-03-12
公開日2011-01-26
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.38 Å)
主引用文献The critical roles of residues P235 and F236 of subunit A of the motor protein A-ATP synthase in P-loop formation and nucleotide binding.
J.Mol.Biol., 401, 2010
3SDZ
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BU of 3sdz by Molmil
Structural characterization of the subunit A mutant F427W of the A-ATP synthase from Pyrococcus horikoshii
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETIC ACID, ...
著者Tadwal, V.S, Manimekalai, M.S.S, Balakrishna, A.M, Gruber, G.
登録日2011-06-09
公開日2012-01-25
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.53 Å)
主引用文献Engineered tryptophan in the adenine-binding pocket of catalytic subunit A of A-ATP synthase demonstrates the importance of aromatic residues in adenine binding, forming a tool for steady-state and time-resolved fluorescence spectroscopy.
Acta Crystallogr.,Sect.F, 67, 2011
3SE0
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BU of 3se0 by Molmil
Structural characterization of the subunit A mutant F508W of the A-ATP synthase from Pyrococcus horikoshii
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETIC ACID, ...
著者Tadwal, V.S, Manimekalai, M.S.S, Balakrishna, A.M, Gruber, G.
登録日2011-06-09
公開日2012-01-25
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.62 Å)
主引用文献Engineered tryptophan in the adenine-binding pocket of catalytic subunit A of A-ATP synthase demonstrates the importance of aromatic residues in adenine binding, forming a tool for steady-state and time-resolved fluorescence spectroscopy.
Acta Crystallogr.,Sect.F, 67, 2011
3IKJ
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BU of 3ikj by Molmil
Structural characterization for the nucleotide binding ability of subunit A mutant S238A of the A1AO ATP synthase
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, V-type ATP synthase alpha chain
著者Kumar, A, Manimekali, M.S.S, Balakrishna, A.M, Jeyakanthan, J, Gruber, G.
登録日2009-08-06
公開日2010-01-12
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Nucleotide binding states of subunit A of the A-ATP synthase and the implication of P-loop switch in evolution.
J.Mol.Biol., 396, 2010
3MFY
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BU of 3mfy by Molmil
Structural characterization of the subunit A mutant F236A of the A-ATP synthase from Pyrococcus horikoshii
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETIC ACID, ...
著者Balakrishna, A.M, Kumar, A, Manimekali, M.S.S, Jeyakanthan, J, Gruber, G.
登録日2010-04-05
公開日2010-07-07
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献The critical roles of residues P235 and F236 of subunit A of the motor protein A-ATP synthase in P-loop formation and nucleotide binding.
J.Mol.Biol., 401, 2010
3ND9
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BU of 3nd9 by Molmil
Structural characterization for the nucleotide binding ability of subunit A of the A1AO ATP synthase
分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, V-type ATP synthase alpha chain
著者Kumar, A, Jeyakanthan, J, Gruber, G.
登録日2010-06-07
公開日2011-03-30
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献The transition-like state and Pi entrance into the catalytic a subunit of the biological engine A-ATP synthase.
J.Mol.Biol., 408, 2011
3ND8
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BU of 3nd8 by Molmil
Structural characterization for the nucleotide binding ability of subunit A of the A1AO ATP synthase
分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, ACETIC ACID, ...
著者Kumar, A, Gruber, G.
登録日2010-06-07
公開日2011-03-30
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献The transition-like state and Pi entrance into the catalytic a subunit of the biological engine A-ATP synthase.
J.Mol.Biol., 408, 2011
2YVE
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BU of 2yve by Molmil
Crystal structure of the methylene blue-bound form of the multi-drug binding transcriptional repressor CgmR
分子名称: 3,7-BIS(DIMETHYLAMINO)PHENOTHIAZIN-5-IUM, CHLORIDE ION, GLYCEROL, ...
著者Itou, H, Shirakihara, Y, Tanaka, I.
登録日2007-04-12
公開日2008-04-15
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Crystal Structures of the Multidrug Binding Repressor Corynebacteriumglutamicum CgmR in Complex with Inducers and with an Operator
J.Mol.Biol., 403, 2010
2YVH
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BU of 2yvh by Molmil
Crystal structure of the operator-binding form of the multi-drug binding transcriptional repressor CgmR
分子名称: 5'-D(*DGP*DGP*DTP*DCP*DGP*DGP*DTP*DAP*DCP*DAP*DGP*DTP*DTP*DA)-3', 5'-D(*DTP*DAP*DAP*DCP*DTP*DGP*DTP*DAP*DCP*DCP*DGP*DAP*DCP*DC)-3', Transcriptional regulator
著者Itou, H, Shirakihara, Y, Tanaka, I.
登録日2007-04-12
公開日2008-04-15
最終更新日2017-01-11
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal Structures of the Multidrug Binding Repressor Corynebacteriumglutamicum CgmR in Complex with Inducers and with an Operator
J.Mol.Biol., 403, 2010
2ZKL
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BU of 2zkl by Molmil
Crystal Structure of capsular polysaccharide assembling protein CapF from staphylococcus aureus
分子名称: Capsular polysaccharide synthesis enzyme Cap5F, GLYCEROL, ZINC ION
著者Miyafusa, T, Tanaka, Y, Yao, M, Tanaka, I, Tsumoto, K.
登録日2008-03-25
公開日2009-03-31
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.61 Å)
主引用文献Crystal structure of capsular polysaccharide assembling protein from Staphylococcus aureus
to be published
2ZOZ
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BU of 2zoz by Molmil
Crystal structure of the ethidium-bound form of the multi-drug binding transcriptional repressor CgmR
分子名称: ETHIDIUM, GLYCEROL, SULFATE ION, ...
著者Itou, H, Shirakihara, Y, Tanaka, I.
登録日2008-06-20
公開日2008-07-08
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Crystal Structures of the Multidrug Binding Repressor Corynebacteriumglutamicum CgmR in Complex with Inducers and with an Operator
J.Mol.Biol., 403, 2010
2ZQ0
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BU of 2zq0 by Molmil
Crystal structure of SusB complexed with acarbose
分子名称: 4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, Alpha-glucosidase (Alpha-glucosidase SusB), CALCIUM ION
著者Yao, M, Tanaka, I, Kitamura, M.
登録日2008-07-31
公開日2008-10-28
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structural and functional analysis of a glycoside hydrolase family 97 enzyme from Bacteroides thetaiotaomicron.
J.Biol.Chem., 283, 2008
2ZGI
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BU of 2zgi by Molmil
Crystal Structure of Putative 4-amino-4-deoxychorismate lyase
分子名称: DI(HYDROXYETHYL)ETHER, PYRIDOXAL-5'-PHOSPHATE, Putative 4-amino-4-deoxychorismate lyase, ...
著者Padmanabhan, B, Bessho, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2008-01-22
公開日2008-07-22
最終更新日2017-10-11
実験手法X-RAY DIFFRACTION (1.93 Å)
主引用文献Structure of putative 4-amino-4-deoxychorismate lyase from Thermus thermophilus HB8.
Acta Crystallogr.,Sect.F, 65, 2009
3AII
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BU of 3aii by Molmil
Archaeal non-discriminating glutamyl-tRNA synthetase from Methanothermobacter thermautotrophicus
分子名称: 1,2-ETHANEDIOL, ACETIC ACID, CALCIUM ION, ...
著者Nureki, O, Ishitani, R.
登録日2010-05-14
公開日2010-08-04
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Structure of an archaeal non-discriminating glutamyl-tRNA synthetase: a missing link in the evolution of Gln-tRNAGln formation
Nucleic Acids Res., 2010
2D5A
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BU of 2d5a by Molmil
hypothetical protein from Pyrococcus horikoshii OT3
分子名称: COENZYME A, hypothetical protein PH1109
著者Hiyama, T.B, Sekine, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-10-31
公開日2006-10-31
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structural basis of CoA recognition by the Pyrococcus single-domain CoA-binding proteins.
J.STRUCT.FUNCT.GENOM., 7, 2006
2D59
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BU of 2d59 by Molmil
hypothetical protein from Pyrococcus horikoshii OT3
分子名称: hypothetical protein PH1109
著者Hiyama, T.B, Sekine, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-10-31
公開日2006-10-31
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Structural basis of CoA recognition by the Pyrococcus single-domain CoA-binding proteins.
J.STRUCT.FUNCT.GENOM., 7, 2006
2D73
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BU of 2d73 by Molmil
Crystal Structure Analysis of SusB
分子名称: CALCIUM ION, alpha-glucosidase SusB
著者Kitamura, M, Yao, M.
登録日2005-11-15
公開日2007-02-27
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structural and functional analysis of a glycoside hydrolase family 97 enzyme from Bacteroides thetaiotaomicron.
J.Biol.Chem., 283, 2008
2DDX
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BU of 2ddx by Molmil
Crystal structure of beta-1,3-xylanase from Vibrio sp. AX-4
分子名称: GLYCEROL, MAGNESIUM ION, beta-1,3-xylanase
著者Sakaguchi, K.
登録日2006-02-06
公開日2007-02-13
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (0.86 Å)
主引用文献Atomic resolution analysis of beta-1,3-xylanase catalytic module from Vibrio sp. AX-4
To be Published
2DI3
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BU of 2di3 by Molmil
Crystal structure of the transcriptional factor CGL2915 from Corynebacterium glutamicum
分子名称: Bacterial regulatory proteins, GntR family, ZINC ION
著者Gao, Y.G, Yao, M, Tanaka, I.
登録日2006-03-28
公開日2007-03-28
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Structural and functional characterization of the LldR from Corynebacterium glutamicum: a transcriptional repressor involved in L-lactate and sugar utilization
Nucleic Acids Res., 36, 2008
6MGL
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BU of 6mgl by Molmil
Crystal structure of the catalytic domain from GH74 enzyme PoGH74 from Paenibacillus odorifer, D60A mutant in complex with XXLG and XGXXLG xyloglucan
分子名称: 3,6,9,12,15,18,21,24,27,30,33,36,39-TRIDECAOXAHENTETRACONTANE-1,41-DIOL, CHLORIDE ION, GLYCEROL, ...
著者Stogios, P.J, Skarina, T, Arnal, G, Watanabe, N, Brumer, H, Savchenko, A.
登録日2018-09-14
公開日2019-01-23
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structural enzymology reveals the molecular basis of substrate regiospecificity and processivity of an exemplar bacterial glycoside hydrolase family 74endo-xyloglucanase.
Biochem. J., 475, 2018
2D5K
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BU of 2d5k by Molmil
Crystal structure of Dps from Staphylococcus aureus
分子名称: Dps family protein, GLYCEROL
著者Tanaka, Y, Yao, M, Watanabe, N, Tanaka, I.
登録日2005-11-02
公開日2006-10-17
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Nucleoid compaction by MrgA(Asp56Ala/Glu60Ala) does not contribute to staphylococcal cell survival against oxidative stress and phagocytic killing by macrophages
FEMS Microbiol. Lett., 360, 2014

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