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2ZOY
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The multi-drug binding transcriptional repressor CgmR (CGL2612 protein) from C.glutamicum
分子名称: GLYCEROL, Transcriptional regulator
著者Itou, H, Yao, M, Watanabe, N, Tanaka, I.
登録日2008-06-20
公開日2008-07-08
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献The CGL2612 protein from Corynebacterium glutamicum is a drug resistance-related transcriptional repressor: structural and functional analysis of a newly identified transcription factor from genomic DNA analysis
J.Biol.Chem., 280, 2005
5B5T
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BU of 5b5t by Molmil
Crystal Structure of Escherichia coli Gamma-Glutamyltranspeptidase in Complex with peptidyl phosphonate inhibitor 1b
分子名称: (2~{S})-2-azanyl-4-[(2~{R})-1-(2-hydroxy-2-oxoethylamino)-1-oxidanylidene-butan-2-yl]oxyphosphonoyl-butanoic acid, CALCIUM ION, Gamma-glutamyltranspeptidase large chain, ...
著者Wada, K, Fukuyama, K.
登録日2016-05-18
公開日2016-09-28
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Phosphonate-based irreversible inhibitors of human gamma-glutamyl transpeptidase (GGT). GGsTop is a non-toxic and highly selective inhibitor with critical electrostatic interaction with an active-site residue Lys562 for enhanced inhibitory activity
Bioorg.Med.Chem., 24, 2016
2DG5
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BU of 2dg5 by Molmil
Crystal Structure of Gamma-glutamyl transpeptidase from Escherichia coli in complex with hydrolyzed Glutathione
分子名称: CALCIUM ION, GLUTAMIC ACID, GLYCEROL, ...
著者Okada, T, Wada, K, Fukuyama, K.
登録日2006-03-08
公開日2006-04-18
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal structures of gamma-glutamyltranspeptidase from Escherichia coli, a key enzyme in glutathione metabolism, and its reaction intermediate.
Proc.Natl.Acad.Sci.Usa, 103, 2006
2DI3
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BU of 2di3 by Molmil
Crystal structure of the transcriptional factor CGL2915 from Corynebacterium glutamicum
分子名称: Bacterial regulatory proteins, GntR family, ZINC ION
著者Gao, Y.G, Yao, M, Tanaka, I.
登録日2006-03-28
公開日2007-03-28
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Structural and functional characterization of the LldR from Corynebacterium glutamicum: a transcriptional repressor involved in L-lactate and sugar utilization
Nucleic Acids Res., 36, 2008
2Z8I
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Crystal Structure of Escherichia coli Gamma-Glutamyltranspeptidase in Complex with Azaserine
分子名称: Gamma-glutamyltranspeptidase, O-DIAZOACETYL-L-SERINE
著者Wada, K, Irie, M, Fukuyama, K.
登録日2007-09-05
公開日2008-06-24
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Crystal structures of Escherichia coli gamma-glutamyltranspeptidase in complex with azaserine and acivicin: novel mechanistic implication for inhibition by glutamine antagonists
J.Mol.Biol., 380, 2008
2Z8K
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BU of 2z8k by Molmil
Crystal Structure of Escherichia coli gamma-Glutamyltranspeptidase in Complex with Acivicin
分子名称: (2S)-AMINO[(5S)-3-CHLORO-4,5-DIHYDROISOXAZOL-5-YL]ACETIC ACID, Gamma-glutamyltranspeptidase
著者Wada, K, Irie, M, Fukuyama, K.
登録日2007-09-05
公開日2008-06-24
最終更新日2012-04-04
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Crystal structures of Escherichia coli gamma-glutamyltranspeptidase in complex with azaserine and acivicin: novel mechanistic implication for inhibition by glutamine antagonists
J.Mol.Biol., 380, 2008
2Z8J
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BU of 2z8j by Molmil
Crystal Structure of Escherichia coli gamma-Glutamyltranspeptidase in Complex with Azaserine prepared in the dark
分子名称: Gamma-glutamyltranspeptidase, O-DIAZOACETYL-L-SERINE
著者Wada, K, Irie, M, Fukuyama, K.
登録日2007-09-05
公開日2008-06-24
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Crystal structures of Escherichia coli gamma-glutamyltranspeptidase in complex with azaserine and acivicin: novel mechanistic implication for inhibition by glutamine antagonists
J.Mol.Biol., 380, 2008
7DTI
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BU of 7dti by Molmil
Solution structure of the complex between RNA polymerase subunit RPB6 and TFIIH p62 PH domain
分子名称: DNA-directed RNA polymerases I, II, and III subunit RPABC2, ...
著者Okuda, M, Nishimura, Y.
登録日2021-01-05
公開日2022-08-10
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Three human RNA polymerases interact with TFIIH via a common RPB6 subunit.
Nucleic Acids Res., 50, 2022
7DTH
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Solution structure of RPB6, common subunit of RNA polymerases I, II, and III
分子名称: DNA-directed RNA polymerases I, II, and III subunit RPABC2
著者Okuda, M, Nishimura, Y.
登録日2021-01-05
公開日2022-01-19
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Three human RNA polymerases interact with TFIIH via a common RPB6 subunit.
Nucleic Acids Res., 50, 2022
8JYQ
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Crystal structure of cancer-specific anti-HER2 antibody H2Mab-214 in complex with epitope peptide
分子名称: H2CasMab-1 VH(S112C),SARAH, H2CasMab-1 VL,SARAH(S37C), H2CasMab-1 epitope peptide
著者Arimori, T, Takagi, J.
登録日2023-07-03
公開日2024-03-13
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Locally misfolded HER2 expressed on cancer cells is a promising target for development of cancer-specific antibodies.
Structure, 32, 2024
8JYR
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Crystal structure of anti-HER2 antibody H2Mab-119 in complex with HER2 domain I
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, H2Mab-119 VH-CH1, H2Mab-119 light chain, ...
著者Arimori, T, Takagi, J.
登録日2023-07-03
公開日2024-03-13
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (1.69 Å)
主引用文献Locally misfolded HER2 expressed on cancer cells is a promising target for development of cancer-specific antibodies.
Structure, 32, 2024
5YEC
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BU of 5yec by Molmil
Crystal structure of Atg7CTD-Atg8-MgATP complex in form II
分子名称: ADENOSINE-5'-TRIPHOSPHATE, Autophagy-related protein 8, MAGNESIUM ION, ...
著者Yamaguchi, M, Satoo, K, Noda, N.N.
登録日2017-09-16
公開日2018-03-28
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.147 Å)
主引用文献Atg7 Activates an Autophagy-Essential Ubiquitin-like Protein Atg8 through Multi-Step Recognition.
J. Mol. Biol., 430, 2018
5WZN
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BU of 5wzn by Molmil
Alpha-N-acetylgalactosaminidase NagBb from Bifidobacterium bifidum - GalNAc complex
分子名称: 2-acetamido-2-deoxy-alpha-D-galactopyranose, Alpha-N-acetylgalactosaminidase, CALCIUM ION, ...
著者Sato, M, Arakawa, T, Ashida, H, Fushinobu, S.
登録日2017-01-18
公開日2017-06-07
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献The first crystal structure of a family 129 glycoside hydrolase from a probiotic bacterium reveals critical residues and metal cofactors
J. Biol. Chem., 292, 2017
5WZP
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Alpha-N-acetylgalactosaminidase NagBb from Bifidobacterium bifidum - ligand free
分子名称: Alpha-N-acetylgalactosaminidase, CALCIUM ION, ZINC ION
著者Sato, M, Arakawa, T, Ashida, H, Fushinobu, S.
登録日2017-01-18
公開日2017-06-07
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.64 Å)
主引用文献The first crystal structure of a family 129 glycoside hydrolase from a probiotic bacterium reveals critical residues and metal cofactors
J. Biol. Chem., 292, 2017
5WZQ
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BU of 5wzq by Molmil
Alpha-N-acetylgalactosaminidase NagBb from Bifidobacterium bifidum - quadruple mutant
分子名称: Alpha-N-acetylgalactosaminidase, GLYCEROL, ZINC ION
著者Sato, M, Arakawa, T, Ashida, H, Fushinobu, S.
登録日2017-01-18
公開日2017-06-07
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献The first crystal structure of a family 129 glycoside hydrolase from a probiotic bacterium reveals critical residues and metal cofactors
J. Biol. Chem., 292, 2017
5WZR
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BU of 5wzr by Molmil
Alpha-N-acetylgalactosaminidase NagBb from Bifidobacterium bifidum - Gal-NHAc-DNJ complex
分子名称: Alpha-N-acetylgalactosaminidase, CALCIUM ION, N-[(3S,4R,5S,6R)-4,5-dihydroxy-6-(hydroxymethyl)piperidin-3-yl]acetamide, ...
著者Sato, M, Arakawa, T, Ashida, H, Fushinobu, S.
登録日2017-01-18
公開日2017-06-07
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.79 Å)
主引用文献The first crystal structure of a family 129 glycoside hydrolase from a probiotic bacterium reveals critical residues and metal cofactors
J. Biol. Chem., 292, 2017
3A75
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Crystal structure of glutamate complex of halotolerant γ-glutamyltranspeptidase from Bacillus subtilis
分子名称: GLUTAMIC ACID, Gamma-glutamyltranspeptidase large chain, Gamma-glutamyltranspeptidase small chain
著者Wada, K, Fukuyama, K.
登録日2009-09-14
公開日2010-03-09
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Crystal structure of the halotolerant gamma-glutamyltranspeptidase from Bacillus subtilis in complex with glutamate reveals a unique architecture of the solvent-exposed catalytic pocket
Febs J., 277, 2010
2DW3
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BU of 2dw3 by Molmil
Solution structure of the Rhodobacter sphaeroides PufX membrane protein
分子名称: Intrinsic membrane protein pufX
著者Wang, Z.Y.
登録日2006-08-02
公開日2007-06-26
最終更新日2022-03-09
実験手法SOLUTION NMR
主引用文献Solution structure of the Rhodobacter sphaeroides PufX membrane protein: implications for the quinone exchange and protein-protein interactions
Biochemistry, 46, 2007
3WHQ
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Crystal structure of gamma-glutamyltranspeptidase from Bacillus subtilis (crystal soaked for 0 min. in acivicin soln. )
分子名称: Gamma-glutamyltranspeptidase large chain, Gamma-glutamyltranspeptidase small chain
著者Wada, K, Fukuyama, K.
登録日2013-08-30
公開日2014-02-19
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Structure of Bacillus subtilis gamma-glutamyltranspeptidase in complex with acivicin: diversity of the binding mode of a classical and electrophilic active-site-directed glutamate analogue.
Acta Crystallogr.,Sect.D, 70, 2014
3WHS
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BU of 3whs by Molmil
Crystal structure of Bacillus subtilis gamma-glutamyltranspeptidase in complex with acivicin
分子名称: (2S)-AMINO[(5S)-3-CHLORO-4,5-DIHYDROISOXAZOL-5-YL]ACETIC ACID, Gamma-glutamyltranspeptidase large chain, Gamma-glutamyltranspeptidase small chain
著者Wada, K, Fukuyama, K.
登録日2013-08-30
公開日2014-02-19
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structure of Bacillus subtilis gamma-glutamyltranspeptidase in complex with acivicin: diversity of the binding mode of a classical and electrophilic active-site-directed glutamate analogue.
Acta Crystallogr.,Sect.D, 70, 2014
3WCK
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Crystal structure of monomeric photosensitizing fluorescent protein, Supernova
分子名称: Monomeric photosenitizing fluorescent protein supernova
著者Sakai, N, Matsuda, T, Takemoto, K, Nagai, T.
登録日2013-05-27
公開日2013-10-02
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献SuperNova, a monomeric photosensitizing fluorescent protein for chromophore-assisted light inactivation
Sci Rep, 3, 2013

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