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5MUV
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BU of 5muv by Molmil
Atomic structure fitted into a localized reconstruction of bacteriophage phi6 packaging hexamer P4
分子名称: ADENOSINE-5'-DIPHOSPHATE, CALCIUM ION, Packaging enzyme P4
著者Sun, Z, El Omari, K, Sun, X, Ilca, S, Kotecha, A, Stuart, D.I, Poranen, M.M, Huiskonen, J.T.
登録日2017-01-14
公開日2017-03-22
最終更新日2019-04-24
実験手法ELECTRON MICROSCOPY (9.1 Å)
主引用文献Double-stranded RNA virus outer shell assembly by bona fide domain-swapping.
Nat Commun, 8, 2017
5MUW
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BU of 5muw by Molmil
Atomic structure of P4 packaging enzyme fitted into a localized reconstruction of bacteriophage phi6 vertex
分子名称: ADENOSINE-5'-DIPHOSPHATE, CALCIUM ION, Packaging enzyme P4
著者Sun, Z, El Omari, K, Sun, X, Ilca, S, Kotecha, A, Stuart, D.I, Poranen, M.M, Huiskonen, J.T.
登録日2017-01-14
公開日2017-03-22
最終更新日2019-12-11
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Double-stranded RNA virus outer shell assembly by bona fide domain-swapping.
Nat Commun, 8, 2017
5MUU
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BU of 5muu by Molmil
dsRNA bacteriophage phi6 nucleocapsid
分子名称: Major inner protein P1, Major outer capsid protein, Packaging enzyme P4
著者Sun, Z, El Omari, K, Sun, X, Ilca, S.L, Kotecha, A, Stuart, D.I, Poranen, M.M, Huiskonen, J.T.
登録日2017-01-14
公開日2017-03-22
最終更新日2019-10-23
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献Double-stranded RNA virus outer shell assembly by bona fide domain-swapping.
Nat Commun, 8, 2017
2VRF
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BU of 2vrf by Molmil
CRYSTAL STRUCTURE OF THE HUMAN BETA-2-SYNTROPHIN PDZ DOMAIN
分子名称: 1,2-ETHANEDIOL, BETA-2-SYNTROPHIN
著者Sun, Z, Roos, A.K, Pike, A.C.W, Pilka, E.S, Cooper, C, Elkins, J.M, Murray, J, Arrowsmith, C.H, Doyle, D, Edwards, A, von Delft, F, Bountra, C, Oppermann, U.
登録日2008-03-31
公開日2008-04-22
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal Structure of the Human Beta-2-Syntrophin Pdz Domain
To be Published
6Q1L
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BU of 6q1l by Molmil
Crystal structure of oxidized iodotyrosine deiodinase (IYD) bound to FMN and 3-iodo-L-tyrosine
分子名称: 3-IODO-TYROSINE, CHLORIDE ION, FLAVIN MONONUCLEOTIDE, ...
著者Sun, Z, Kavran, J.M, Rokita, S.E.
登録日2019-08-05
公開日2021-04-07
最終更新日2022-04-20
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献The minimal structure for iodotyrosine deiodinase function is defined by an outlier protein from the thermophilic bacterium Thermotoga neapolitana.
J.Biol.Chem., 297, 2021
1ZVO
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BU of 1zvo by Molmil
Semi-extended solution structure of human myeloma immunoglobulin D determined by constrained X-ray scattering
分子名称: Immunoglobulin delta heavy chain, myeloma immunoglobulin D lambda
著者Sun, Z, Almogren, A, Furtado, P.B, Chowdhury, B, Kerr, M.A, Perkins, S.J.
登録日2005-06-02
公開日2005-10-25
最終更新日2024-02-14
実験手法SOLUTION SCATTERING
主引用文献Semi-extended Solution Structure of Human Myeloma Immunoglobulin D Determined by Constrained X-ray Scattering.
J.Mol.Biol., 353, 2005
1W0S
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BU of 1w0s by Molmil
Solution structure of trimeric form of properdin by X-ray solution scattering and analytical ultracentrifugation
分子名称: PROPERDIN
著者Sun, Z, Reid, K.B.M, Perkins, S.J.
登録日2004-06-09
公開日2005-07-06
実験手法SOLUTION SCATTERING
主引用文献The Dimeric and Trimeric Solution Structures of the Multidomain Complement Protein Properdin by X-Ray Scattering, Analytical Ultracentrifugation and Constrained Modelling.
J.Mol.Biol., 343, 2004
1W0R
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BU of 1w0r by Molmil
Solution structure of dimeric form of properdin by X-ray solution scattering and analytical ultracentrifugation
分子名称: PROPERDIN
著者Sun, Z, Reid, K.B.M, Perkins, S.J.
登録日2004-06-09
公開日2005-07-06
実験手法SOLUTION SCATTERING
主引用文献The Dimeric and Trimeric Solution Structures of the Multidomain Complement Protein Properdin by X-Ray Scattering, Analytical Ultracentrifugation and Constrained Modelling.
J.Mol.Biol., 343, 2004
8HR2
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BU of 8hr2 by Molmil
Ternary Crystal Complex Structure of RBD with NB1B5 and NB1C6
分子名称: NB1B5, NB1C6, Spike protein S1
著者Sun, Z.
登録日2022-12-14
公開日2023-08-16
実験手法X-RAY DIFFRACTION (1.94 Å)
主引用文献Structure basis of two nanobodies neutralizing SARS-CoV-2 Omicron variant by targeting ultra-conservative epitopes.
J.Struct.Biol., 215, 2023
6Q1B
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BU of 6q1b by Molmil
Crystal structure of oxidized iodotyrosine deiodinase (IYD) bound to FMN and 3-fluoro-L-tyrosine
分子名称: 3-FLUOROTYROSINE, CHLORIDE ION, FLAVIN MONONUCLEOTIDE, ...
著者Sun, Z, Kavran, J.M, Rokita, S.E.
登録日2019-08-03
公開日2021-02-03
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.596 Å)
主引用文献Crystal structure of oxidized Tn IYD bound to FMN and 3-fluoro-L-tyrosine
To Be Published
6PZ0
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BU of 6pz0 by Molmil
Crystal structure of oxidized iodotyrosine deiodinase (IYD) bound to FMN and L-Tyrosine
分子名称: CHLORIDE ION, FLAVIN MONONUCLEOTIDE, TYROSINE, ...
著者Sun, Z, Kavran, J.M, Rokita, S.E.
登録日2019-07-31
公開日2021-02-03
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献The minimal structure for iodotyrosine deiodinase function is defined by an outlier protein from the thermophilic bacterium Thermotoga neapolitana.
J.Biol.Chem., 297, 2021
8TMR
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BU of 8tmr by Molmil
Crystal structure of KPC-44 carbapenemase complexed with avibactam
分子名称: (2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide, 1,2-ETHANEDIOL, PHOSPHATE ION, ...
著者Sun, Z, Palzkill, T, Hu, L, Lin, H, Sankaran, B, Wang, J, Prasad, B.
登録日2023-07-30
公開日2023-12-06
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.37 Å)
主引用文献Klebsiella pneumoniae carbapenemase variant 44 acquires ceftazidime-avibactam resistance by altering the conformation of active-site loops.
J.Biol.Chem., 300, 2023
8TMT
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BU of 8tmt by Molmil
Crystal structure of KPC-44 carbapenemase in complex with vaborbactam
分子名称: 1,2-ETHANEDIOL, GLYCEROL, LITHIUM ION, ...
著者Sun, Z, Palzkill, T, Hu, L, Neetu, N, Lin, H, Sankaran, B, Wang, J, Prasad, B.
登録日2023-07-30
公開日2023-12-06
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Klebsiella pneumoniae carbapenemase variant 44 acquires ceftazidime-avibactam resistance by altering the conformation of active-site loops.
J.Biol.Chem., 300, 2023
8TJM
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BU of 8tjm by Molmil
Crystal structure of KPC-44 carbapenemase
分子名称: 1,2-ETHANEDIOL, SULFATE ION, beta-lactamase
著者Sun, Z, Palzkill, T, Hu, L, Lin, H, Sankaran, B, Wang, J, Prasad, B.
登録日2023-07-23
公開日2023-12-06
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.28 Å)
主引用文献Klebsiella pneumoniae carbapenemase variant 44 acquires ceftazidime-avibactam resistance by altering the conformation of active-site loops.
J.Biol.Chem., 300, 2023
8TN0
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BU of 8tn0 by Molmil
Crystal structure of KPC-44 carbapenemase w/o cryoprotectant
分子名称: SULFATE ION, beta-lactamase
著者Sun, Z, Palzkill, T, Hu, L, Lin, H, Sankaran, B, Wang, J, Prasad, B.
登録日2023-07-31
公開日2023-12-06
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.31 Å)
主引用文献Klebsiella pneumoniae carbapenemase variant 44 acquires ceftazidime-avibactam resistance by altering the conformation of active-site loops.
J.Biol.Chem., 300, 2023
6TYK
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BU of 6tyk by Molmil
Crystal structure of iodotyrosine deiodinase (IYD) in the semiquinone form bound to FMN and 3-iodo-L-tyrosine
分子名称: 3-IODO-TYROSINE, CHLORIDE ION, FLAVIN MONONUCLEOTIDE, ...
著者Sun, Z, Kavran, J.M, Rokita, S.E.
登録日2019-08-09
公開日2021-04-07
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Structure of Tn IYD bound in the semiquinone form bound to FMN and 3-iodo-L-tyrosine
To Be Published
7X6W
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BU of 7x6w by Molmil
SFTSV 2 fold hexamer
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelopment polyprotein, alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
著者Sun, Z, Lou, Z.
登録日2022-03-08
公開日2023-07-19
最終更新日2023-12-13
実験手法ELECTRON MICROSCOPY (5.18 Å)
主引用文献Architecture of severe fever with thrombocytopenia syndrome virus.
Protein Cell, 14, 2023
7X72
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BU of 7x72 by Molmil
SFTSV 5 fold pentamer
分子名称: Envelopment polyprotein, alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
著者Sun, Z, Lou, Z.
登録日2022-03-08
公開日2023-08-16
最終更新日2023-12-13
実験手法ELECTRON MICROSCOPY (7.2 Å)
主引用文献Architecture of severe fever with thrombocytopenia syndrome virus.
Protein Cell, 14, 2023
7X6U
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BU of 7x6u by Molmil
SFTSV 3 fold hexmer
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelopment polyprotein, alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
著者Sun, Z, Lou, Z.
登録日2022-03-08
公開日2023-08-16
最終更新日2023-12-13
実験手法ELECTRON MICROSCOPY (4.5 Å)
主引用文献Architecture of severe fever with thrombocytopenia syndrome virus.
Protein Cell, 14, 2023
4XBX
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BU of 4xbx by Molmil
Crystal Structure of the L74F/M78F/L103V/L114V/I116V/F139V/L147V mutant of LEH
分子名称: Limonene-1,2-epoxide hydrolase
著者Kong, X.D, Sun, Z, Xu, J.H, Reetz, M.T, Zhou, J.
登録日2014-12-17
公開日2015-07-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.53 Å)
主引用文献Reshaping an Enzyme Binding Pocket for Enhanced and Inverted Stereoselectivity: Use of Smallest Amino Acid Alphabets in Directed Evolution
Angew.Chem.Int.Ed.Engl., 54, 2015
4XBT
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BU of 4xbt by Molmil
Crystal Structure of the L74F/M78F/L103V/L114V/I116V/F139V/L147V mutant of LEH complexed with (S,S)-cyclohexanediol
分子名称: (1S,2S)-cyclohexane-1,2-diol, CITRATE ANION, Limonene-1,2-epoxide hydrolase
著者Kong, X.D, Sun, Z, Lonsdale, R, Xu, J.H, Reetz, M.T, Zhou, J.
登録日2014-12-17
公開日2015-07-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Reshaping an Enzyme Binding Pocket for Enhanced and Inverted Stereoselectivity: Use of Smallest Amino Acid Alphabets in Directed Evolution
Angew.Chem.Int.Ed.Engl., 54, 2015
4XDV
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BU of 4xdv by Molmil
Crystal Structure of the L74F/M78V/I80V/L114F mutant of LEH complexed with cyclohexanediol
分子名称: (1R,2R)-cyclohexane-1,2-diol, Limonene-1,2-epoxide hydrolase
著者Kong, X.D, Sun, Z, Lonsdale, R, Xu, J.H, Reetz, M.T, Zhou, J.
登録日2014-12-20
公開日2015-07-15
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Reshaping an Enzyme Binding Pocket for Enhanced and Inverted Stereoselectivity: Use of Smallest Amino Acid Alphabets in Directed Evolution
Angew.Chem.Int.Ed.Engl., 54, 2015
4XBY
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BU of 4xby by Molmil
Crystal Structure of the L74F/M78V/I80V/L114F mutant of LEH complexed with cyclopentene oxide
分子名称: (1R,5S)-6-oxabicyclo[3.1.0]hexane, Limonene-1,2-epoxide hydrolase
著者Kong, X.D, Sun, Z, Xu, J.H, Reetz, M.T, Zhou, J.
登録日2014-12-17
公開日2015-07-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Reshaping an Enzyme Binding Pocket for Enhanced and Inverted Stereoselectivity: Use of Smallest Amino Acid Alphabets in Directed Evolution
Angew.Chem.Int.Ed.Engl., 54, 2015
4XDW
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BU of 4xdw by Molmil
Crystal Structure of the L74F/M78V/I80V/L114F mutant of LEH
分子名称: Limonene-1,2-epoxide hydrolase
著者Kong, X.D, Sun, Z, Lonsdale, R, Xu, J.H, Reetz, M.T, Zhou, J.
登録日2014-12-20
公開日2015-07-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Reshaping an Enzyme Binding Pocket for Enhanced and Inverted Stereoselectivity: Use of Smallest Amino Acid Alphabets in Directed Evolution
Angew.Chem.Int.Ed.Engl., 54, 2015
6L62
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BU of 6l62 by Molmil
Neutralization mechanism of a monoclonal antibody targeting a porcine circovirus type 2 Cap protein conformational epitope
分子名称: Capsid protein, Heavy chain of Fab fragment, Light chain of Fab fragment
著者Sun, Z, Huang, L, Xia, D, Wei, Y, Sun, E, Zhu, H, Bian, H, Wu, H, Feng, L, Wang, J, Liu, C.
登録日2019-10-25
公開日2020-02-12
最終更新日2020-04-29
実験手法ELECTRON MICROSCOPY (7.2 Å)
主引用文献Neutralization Mechanism of a Monoclonal Antibody Targeting a Porcine Circovirus Type 2 Cap Protein Conformational Epitope.
J.Virol., 94, 2020

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