Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
8CVV
DownloadVisualize
BU of 8cvv by Molmil
20ns Temperature-Jump (Dark1) XFEL structure of Lysozyme
Descriptor: ACETATE ION, CHLORIDE ION, Lysozyme C, ...
Authors:Wolff, A.M, Thompson, M.C, Fraser, J.S, Nango, E.
Deposit date:2022-05-18
Release date:2022-06-22
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Mapping protein dynamics at high spatial resolution with temperature-jump X-ray crystallography.
Nat.Chem., 15, 2023
8CWE
DownloadVisualize
BU of 8cwe by Molmil
20ns Temperature-Jump (Dark2) XFEL structure of Lysozyme Bound to N,N'-diacetylchitobiose
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose, CHLORIDE ION, Lysozyme C, ...
Authors:Wolff, A.M, Thompson, M.C, Fraser, J.S, Nango, E.
Deposit date:2022-05-19
Release date:2022-06-22
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Mapping protein dynamics at high spatial resolution with temperature-jump X-ray crystallography.
Nat.Chem., 15, 2023
8CWG
DownloadVisualize
BU of 8cwg by Molmil
200us Temperature-Jump (Dark1) XFEL structure of Lysozyme Bound to N,N'-diacetylchitobiose
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose, CHLORIDE ION, Lysozyme C, ...
Authors:Wolff, A.M, Thompson, M.C, Fraser, J.S, Nango, E.
Deposit date:2022-05-19
Release date:2022-06-22
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Mapping protein dynamics at high spatial resolution with temperature-jump X-ray crystallography.
Nat.Chem., 15, 2023
8CVW
DownloadVisualize
BU of 8cvw by Molmil
20ns Temperature-Jump (Dark2) XFEL structure of Lysozyme
Descriptor: ACETATE ION, CHLORIDE ION, Lysozyme C, ...
Authors:Wolff, A.M, Thompson, M.C, Fraser, J.S, Nango, E.
Deposit date:2022-05-18
Release date:2022-06-22
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Mapping protein dynamics at high spatial resolution with temperature-jump X-ray crystallography.
Nat.Chem., 15, 2023
8CW3
DownloadVisualize
BU of 8cw3 by Molmil
20us Temperature-Jump (Dark2) XFEL structure of Lysozyme
Descriptor: ACETATE ION, CHLORIDE ION, Lysozyme C, ...
Authors:Wolff, A.M, Thompson, M.C, Fraser, J.S, Nango, E.
Deposit date:2022-05-18
Release date:2022-06-22
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Mapping protein dynamics at high spatial resolution with temperature-jump X-ray crystallography.
Nat.Chem., 15, 2023
8CWB
DownloadVisualize
BU of 8cwb by Molmil
Laser Off Temperature-Jump XFEL structure of Lysozyme Bound to N,N'-diacetylchitobiose
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose, CHLORIDE ION, Lysozyme C, ...
Authors:Wolff, A.M, Thompson, M.C, Fraser, J.S, Nango, E.
Deposit date:2022-05-19
Release date:2022-06-22
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.51 Å)
Cite:Mapping protein dynamics at high spatial resolution with temperature-jump X-ray crystallography.
Nat.Chem., 15, 2023
8CWF
DownloadVisualize
BU of 8cwf by Molmil
200us Temperature-Jump (Light) XFEL structure of Lysozyme Bound to N,N'-diacetylchitobiose
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose, CHLORIDE ION, Lysozyme C, ...
Authors:Wolff, A.M, Thompson, M.C, Fraser, J.S, Nango, E.
Deposit date:2022-05-19
Release date:2022-06-22
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Mapping protein dynamics at high spatial resolution with temperature-jump X-ray crystallography.
Nat.Chem., 15, 2023
8CW6
DownloadVisualize
BU of 8cw6 by Molmil
200us Temperature-Jump (Dark1) XFEL structure of Lysozyme
Descriptor: ACETATE ION, CHLORIDE ION, Lysozyme C, ...
Authors:Wolff, A.M, Thompson, M.C, Fraser, J.S, Nango, E.
Deposit date:2022-05-18
Release date:2022-06-22
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Mapping protein dynamics at high spatial resolution with temperature-jump X-ray crystallography.
Nat.Chem., 15, 2023
8CWH
DownloadVisualize
BU of 8cwh by Molmil
200us Temperature-Jump (Dark2) XFEL structure of Lysozyme Bound to N,N'-diacetylchitobiose
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose, CHLORIDE ION, Lysozyme C, ...
Authors:Wolff, A.M, Thompson, M.C, Fraser, J.S, Nango, E.
Deposit date:2022-05-19
Release date:2022-06-22
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Mapping protein dynamics at high spatial resolution with temperature-jump X-ray crystallography.
Nat.Chem., 15, 2023
8CW0
DownloadVisualize
BU of 8cw0 by Molmil
20us Temperature-Jump (Light) XFEL structure of Lysozyme
Descriptor: ACETATE ION, CHLORIDE ION, Lysozyme C, ...
Authors:Wolff, A.M, Thompson, M.C, Fraser, J.S, Nango, E.
Deposit date:2022-05-18
Release date:2022-06-22
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Mapping protein dynamics at high spatial resolution with temperature-jump X-ray crystallography.
Nat.Chem., 15, 2023
8CW8
DownloadVisualize
BU of 8cw8 by Molmil
Laser Off Temperature-Jump XFEL structure of Lysozyme
Descriptor: ACETATE ION, CHLORIDE ION, Lysozyme C, ...
Authors:Wolff, A.M, Thompson, M.C, Fraser, J.S, Nango, E.
Deposit date:2022-05-18
Release date:2022-06-22
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Mapping protein dynamics at high spatial resolution with temperature-jump X-ray crystallography.
Nat.Chem., 15, 2023
8CWC
DownloadVisualize
BU of 8cwc by Molmil
20ns Temperature-Jump (Light) XFEL structure of Lysozyme Bound to N,N'-diacetylchitobiose
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose, CHLORIDE ION, Lysozyme C, ...
Authors:Wolff, A.M, Thompson, M.C, Fraser, J.S, Nango, E.
Deposit date:2022-05-19
Release date:2022-06-22
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Mapping protein dynamics at high spatial resolution with temperature-jump X-ray crystallography.
Nat.Chem., 15, 2023
8CW5
DownloadVisualize
BU of 8cw5 by Molmil
200us Temperature-Jump (Light) XFEL structure of Lysozyme
Descriptor: ACETATE ION, CHLORIDE ION, Lysozyme C, ...
Authors:Wolff, A.M, Thompson, M.C, Fraser, J.S, Nango, E.
Deposit date:2022-05-18
Release date:2022-06-22
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Mapping protein dynamics at high spatial resolution with temperature-jump X-ray crystallography.
Nat.Chem., 15, 2023
8CWD
DownloadVisualize
BU of 8cwd by Molmil
20ns Temperature-Jump (Dark1) XFEL structure of Lysozyme Bound to N,N'-diacetylchitobiose
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose, CHLORIDE ION, Lysozyme C, ...
Authors:Wolff, A.M, Thompson, M.C, Fraser, J.S, Nango, E.
Deposit date:2022-05-19
Release date:2022-06-22
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Mapping protein dynamics at high spatial resolution with temperature-jump X-ray crystallography.
Nat.Chem., 15, 2023
5JOO
DownloadVisualize
BU of 5joo by Molmil
XFEL structure of influenza A M2 wild type TM domain at low pH in the lipidic cubic phase at room temperature
Descriptor: CALCIUM ION, CHLORIDE ION, Matrix protein 2
Authors:Thomaston, J.L, Woldeyes, R.A, Fraser, J.S, DeGrado, W.F.
Deposit date:2016-05-02
Release date:2017-08-02
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.413 Å)
Cite:XFEL structures of the influenza M2 proton channel: Room temperature water networks and insights into proton conduction.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5Y5H
DownloadVisualize
BU of 5y5h by Molmil
SF-ROX structure of cytochrome P450nor (NO-bound state) determined at SACLA
Descriptor: GLYCEROL, NADP nitrous oxide-forming nitric oxide reductase, NITRIC OXIDE, ...
Authors:Tosha, T, Nomura, T, Nishida, T, Yamagiwa, R, Yamashita, K, Hirata, K, Ueno, G, Kimura, T, Hisano, T, Muramoto, K, Sawai, H, Takeda, H, Yamashita, A, Murakami, H, Owada, S, Tono, K, Yabashi, M, Yamamoto, M, Ago, H, Sugimoto, H, Shiro, Y, Kubo, M.
Deposit date:2017-08-09
Release date:2017-12-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Capturing an initial intermediate during the P450nor enzymatic reaction using time-resolved XFEL crystallography and caged-substrate.
Nat Commun, 8, 2017
5WS5
DownloadVisualize
BU of 5ws5 by Molmil
Native XFEL structure of photosystem II (preflash dark dataset)
Descriptor: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ...
Authors:Suga, M, Shen, J.R.
Deposit date:2016-12-05
Release date:2017-03-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Light-induced structural changes and the site of O=O bond formation in PSII caught by XFEL.
Nature, 543, 2017
5WS6
DownloadVisualize
BU of 5ws6 by Molmil
Native XFEL structure of Photosystem II (preflash two-flash dataset
Descriptor: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ...
Authors:Suga, M, Shen, J.R.
Deposit date:2016-12-05
Release date:2017-03-15
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Light-induced structural changes and the site of O=O bond formation in PSII caught by XFEL.
Nature, 543, 2017
5XFE
DownloadVisualize
BU of 5xfe by Molmil
Luciferin-regenerating enzyme solved by SAD using XFEL (refined against 11,000 patterns)
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Luciferin regenerating enzyme, MAGNESIUM ION, ...
Authors:Yamashita, K, Pan, D, Okuda, T, Murai, T, Kodan, A, Yamaguchi, T, Gomi, K, Kajiyama, N, Kato, H, Ago, H, Yamamoto, M, Nakatsu, T.
Deposit date:2017-04-10
Release date:2017-08-30
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Experimental phase determination with selenomethionine or mercury-derivatization in serial femtosecond crystallography
IUCrJ, 4, 2017
5Y5F
DownloadVisualize
BU of 5y5f by Molmil
Structure of cytochrome P450nor in NO-bound state: damaged by low-dose (0.72 MGy) X-ray
Descriptor: GLYCEROL, NADP nitrous oxide-forming nitric oxide reductase, NITRIC OXIDE, ...
Authors:Tosha, T, Nomura, T, Nishida, T, Ueno, G, Murakami, H, Yamashita, K, Hirata, K, Yamamoto, M, Ago, H, Sugimoto, H, Shiro, Y, Kubo, M.
Deposit date:2017-08-09
Release date:2017-12-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Capturing an initial intermediate during the P450nor enzymatic reaction using time-resolved XFEL crystallography and caged-substrate.
Nat Commun, 8, 2017
5Y5G
DownloadVisualize
BU of 5y5g by Molmil
Structure of cytochrome P450nor in NO-bound state: damaged by high-dose (5.7 MGy) X-ray
Descriptor: GLYCEROL, NADP nitrous oxide-forming nitric oxide reductase, NITRIC OXIDE, ...
Authors:Tosha, T, Nomura, T, Nishida, T, Ueno, G, Murakami, H, Yamashita, K, Hirata, K, Yamamoto, M, Ago, H, Sugimoto, H, Shiro, Y, Kubo, M.
Deposit date:2017-08-09
Release date:2017-12-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:Capturing an initial intermediate during the P450nor enzymatic reaction using time-resolved XFEL crystallography and caged-substrate.
Nat Commun, 8, 2017
5XFC
DownloadVisualize
BU of 5xfc by Molmil
Serial femtosecond X-ray structure of a stem domain of human O-mannose beta-1,2-N-acetylglucosaminyltransferase solved by Se-SAD using XFEL (refined against 13,000 patterns)
Descriptor: 4-nitrophenyl beta-D-mannopyranoside, Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1
Authors:Kuwabara, N, Fumiaki, Y, Kato, R, Manya, H.
Deposit date:2017-04-10
Release date:2017-08-30
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Experimental phase determination with selenomethionine or mercury-derivatization in serial femtosecond crystallography
IUCrJ, 4, 2017
5XFD
DownloadVisualize
BU of 5xfd by Molmil
Serial femtosecond X-ray structure of Agrocybe cylindracea galectin with lactose solved by Se-SAD using XFEL (refined against 60,000 patterns)
Descriptor: Galactoside-binding lectin, alpha-L-fucopyranose-(1-2)-[2-acetamido-2-deoxy-alpha-D-galactopyranose-(1-3)]beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose
Authors:Kuwabara, N, Fumiaki, Y, Kato, R.
Deposit date:2017-04-10
Release date:2017-08-30
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Experimental phase determination with selenomethionine or mercury-derivatization in serial femtosecond crystallography
IUCrJ, 4, 2017
8IR6
DownloadVisualize
BU of 8ir6 by Molmil
XFEL structure of cyanobacterial photosystem II following one flash (1F) with a 20-nanosecond delay
Descriptor: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ...
Authors:Li, H, Suga, M, Shen, J.R.
Deposit date:2023-03-17
Release date:2024-01-17
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Oxygen-evolving photosystem II structures during S 1 -S 2 -S 3 transitions.
Nature, 626, 2024
8IRI
DownloadVisualize
BU of 8iri by Molmil
XFEL structure of cyanobacterial photosystem II following two flashes (2F) with a 5-millisecond delay
Descriptor: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ...
Authors:Li, H, Suga, M, Shen, J.R.
Deposit date:2023-03-17
Release date:2024-01-17
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Oxygen-evolving photosystem II structures during S 1 -S 2 -S 3 transitions.
Nature, 626, 2024

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon