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1WU3
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Crystal structure of recombinant murine interferon beta
分子名称: Interferon beta
著者Senda, T, Saitoh, S, Mitsui, Y.
登録日2004-12-01
公開日2004-12-14
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Refined crystal structure of recombinant murine interferon-beta at 2.15 A resolution
J.Mol.Biol., 253, 1995
1D7Y
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BU of 1d7y by Molmil
CRYSTAL STRUCTURE OF NADH-DEPENDENT FERREDOXIN REDUCTASE, BPHA4
分子名称: FERREDOXIN REDUCTASE, FLAVIN-ADENINE DINUCLEOTIDE
著者Senda, T, Yamada, T, Sakurai, N, Kubota, M, Nishizaki, T, Masai, E, Fukuda, M, Mitsui, Y.
登録日1999-10-21
公開日2000-12-20
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structure of NADH-dependent ferredoxin reductase component in biphenyl dioxygenase.
J.Mol.Biol., 304, 2000
1F3P
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FERREDOXIN REDUCTASE (BPHA4)-NADH COMPLEX
分子名称: FERREDOXIN REDUCTASE, FLAVIN-ADENINE DINUCLEOTIDE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
著者Senda, T, Yamada, T, Sakurai, N, Kubota, M, Nishizaki, T, Masai, E, Fukuda, M, Mitsuidagger, Y.
登録日2000-06-06
公開日2001-06-06
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structure of NADH-dependent ferredoxin reductase component in biphenyl dioxygenase.
J.Mol.Biol., 304, 2000
1DHY
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BU of 1dhy by Molmil
KKS102 BPHC ENZYME
分子名称: 2,3-DIHYDROXYBIPHENYL 1,2-DIOXYGENASE, FE (III) ION
著者Senda, T, Sugiyama, K, Narita, H, Mitsui, Y.
登録日1995-07-07
公開日1995-10-15
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Three-dimensional structures of free form and two substrate complexes of an extradiol ring-cleavage type dioxygenase, the BphC enzyme from Pseudomonas sp. strain KKS102.
J.Mol.Biol., 255, 1996
1QG7
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BU of 1qg7 by Molmil
STROMA CELL-DERIVED FACTOR-1ALPHA (SDF-1ALPHA)
分子名称: STROMAL CELL-DERIVED FACTOR 1 ALPHA, SULFATE ION
著者Senda, T, Nandhagopal, N, Sugimoto, K, Mitsui, Y.
登録日1999-04-21
公開日2001-02-28
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of recombinant native SDF-1alpha with additional mutagenesis studies: an attempt at a more comprehensive interpretation of accumulated structure-activity relationship data.
J.Interferon Cytokine Res., 20, 2000
1EIL
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BU of 1eil by Molmil
2,3-DIHYDROXYBIPHENYL-1,2-DIOXYGENASE
分子名称: 2,3-DIHYDROXYBIPHENYL 1,2-DIOXYGENASE, FE (III) ION, SULFATE ION
著者Senda, T.
登録日2000-02-26
公開日2001-02-26
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structures of substrate free and complex forms of reactivated BphC, an extradiol type ring-cleavage dioxygenase.
J.Inorg.Biochem., 83, 2001
1EIR
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BU of 1eir by Molmil
2,3-DIHYDROXYBIPHENYL-1,2-DIOXYGENASE
分子名称: 2,3-DIHYDROXYBIPHENYL-1,2-DIOXYGENASE, BIPHENYL-2,3-DIOL, FE (III) ION
著者Senda, T.
登録日2000-02-28
公開日2001-02-28
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structures of substrate free and complex forms of reactivated BphC, an extradiol type ring-cleavage dioxygenase.
J.Inorg.Biochem., 83, 2001
2GR2
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BU of 2gr2 by Molmil
Crystal structure of Ferredoxin reductase, BphA4 (oxidized form)
分子名称: ADENOSINE-5-DIPHOSPHORIBOSE, FLAVIN-ADENINE DINUCLEOTIDE, ferredoxin reductase
著者Senda, T, Senda, M.
登録日2006-04-22
公開日2007-05-22
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献A ferredoxin reductase BphA4 uses a butterfly motion of FAD to regulate affinity for ferredoxin
To be Published
2GQW
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Crystal structure of Ferredoxin reductase, BphA4 (oxidized form)
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, FORMIC ACID, GLYCEROL, ...
著者Senda, T, Senda, M.
登録日2006-04-22
公開日2007-05-22
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Molecular Mechanism of the Redox-dependent Interaction between NADH-dependent Ferredoxin Reductase and Rieske-type [2Fe-2S] Ferredoxin
J.Mol.Biol., 373, 2007
2GR0
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BU of 2gr0 by Molmil
Crystal structure of Ferredoxin reductase, BphA4 (oxidized form, NAD+ complex)
分子名称: ADENOSINE-5'-DIPHOSPHATE, FLAVIN-ADENINE DINUCLEOTIDE, ferredoxin reductase
著者Senda, T, Senda, M.
登録日2006-04-22
公開日2007-05-22
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Molecular Mechanism of the Redox-dependent Interaction between NADH-dependent Ferredoxin Reductase and Rieske-type [2Fe-2S] Ferredoxin
J.Mol.Biol., 373, 2007
2GR3
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BU of 2gr3 by Molmil
Crystal structure of Ferredoxin reductase, BphA4 (oxidized form)
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, FORMIC ACID, GLYCEROL, ...
著者Senda, T, Senda, M.
登録日2006-04-22
公開日2007-05-22
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献A ferredoxin reductase BphA4 uses a butterfly motion of FAD to regulate affinity for ferredoxin
To be Published
2GR1
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BU of 2gr1 by Molmil
Crystal structure of Ferredoxin reductase, BphA4 (hydroquinone)
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, ferredoxin reductase
著者Senda, T, Senda, M.
登録日2006-04-22
公開日2007-05-22
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献A ferredoxin reductase BphA4 uses a butterfly motion of FAD to regulate affinity for ferredoxin
To be Published
2YVJ
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BU of 2yvj by Molmil
Crystal structure of the ferredoxin-ferredoxin reductase (BPHA3-BPHA4)complex
分子名称: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, Biphenyl dioxygenase ferredoxin subunit, FE2/S2 (INORGANIC) CLUSTER, ...
著者Senda, T, Senda, M.
登録日2007-04-12
公開日2007-10-23
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Molecular Mechanism of the Redox-dependent Interaction between NADH-dependent Ferredoxin Reductase and Rieske-type [2Fe-2S] Ferredoxin
J.Mol.Biol., 373, 2007
2YVF
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BU of 2yvf by Molmil
Crystal structure of ferredoxin reductase BPHA4 (hydroquinone)
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, FORMIC ACID, Ferredoxin reductase, ...
著者Senda, T, Senda, M.
登録日2007-04-12
公開日2007-10-16
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Molecular Mechanism of the Redox-dependent Interaction between NADH-dependent Ferredoxin Reductase and Rieske-type [2Fe-2S] Ferredoxin
J.Mol.Biol., 373, 2007
2YVG
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BU of 2yvg by Molmil
crystal structure of ferredoxin reductase, BPHA4 (blue-semiquinone)
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, Ferredoxin reductase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
著者Senda, T, Senda, M.
登録日2007-04-12
公開日2007-10-16
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Molecular Mechanism of the Redox-dependent Interaction between NADH-dependent Ferredoxin Reductase and Rieske-type [2Fe-2S] Ferredoxin
J.Mol.Biol., 373, 2007
1EIQ
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BU of 1eiq by Molmil
2,3-DIHYDROXYBIPHENYL-1,2-DIOXYGENASE
分子名称: 2,3-DIHYDROXYBIPHENYL-1,2-DIOXYGENASE, FE (III) ION
著者Senda, T.
登録日2000-02-28
公開日2001-02-28
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structures of substrate free and complex forms of reactivated BphC, an extradiol type ring-cleavage dioxygenase.
J.Inorg.Biochem., 83, 2001
1IFA
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BU of 1ifa by Molmil
THREE-DIMENSIONAL CRYSTAL STRUCTURE OF RECOMBINANT MURINE INTERFERON-BETA
分子名称: ASPARAGINE, INTERFERON-BETA
著者Mitsui, Y, Senda, T, Matsuda, S, Kawano, G, Nakamura, K.T, Shimizu, H.
登録日1991-10-29
公開日1994-01-31
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Three-dimensional crystal structure of recombinant murine interferon-beta.
EMBO J., 11, 1992
5XXP
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BU of 5xxp by Molmil
Crystal structure of CbnR_DBD-DNA complex
分子名称: DNA (25-MER), LysR-type regulatory protein
著者Senda, T, Senda, M.
登録日2017-07-04
公開日2018-01-17
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Crystal structure of the DNA-binding domain of the LysR-type transcriptional regulator CbnR in complex with a DNA fragment of the recognition-binding site in the promoter region
FEBS J., 285, 2018
6LTB
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BU of 6ltb by Molmil
Crystal Structure of Nonribosomal peptide synthetases (NRPS), FmoA3 (S1046A)-AMPPNP bound form
分子名称: Nonribosomal peptide synthetase, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
著者Senda, T, Harada, A.
登録日2020-01-22
公開日2021-02-24
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Structural and Functional Analyses of the Tridomain-Nonribosomal Peptide Synthetase FmoA3 for 4-Methyloxazoline Ring Formation.
Angew.Chem.Int.Ed.Engl., 60, 2021
6LTA
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BU of 6lta by Molmil
Crystal Structure of Nonribosomal peptide synthetases (NRPS), FmoA3 (S1046A)
分子名称: ACRYLIC ACID, Nonribosomal peptide synthetase
著者Senda, T, Harada, A.
登録日2020-01-22
公開日2021-02-24
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献Structural and Functional Analyses of the Tridomain-Nonribosomal Peptide Synthetase FmoA3 for 4-Methyloxazoline Ring Formation.
Angew.Chem.Int.Ed.Engl., 60, 2021
6LTC
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BU of 6ltc by Molmil
Crystal Structure of Nonribosomal peptide synthetases (NRPS), FmoA3 (S1046A)-alpha-methyl-L-serine-AMP bound form
分子名称: ADENOSINE MONOPHOSPHATE, CHLORIDE ION, Nonribosomal peptide synthetase, ...
著者Senda, T, Harada, A.
登録日2020-01-22
公開日2021-03-10
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Structural and Functional Analyses of the Tridomain-Nonribosomal Peptide Synthetase FmoA3 for 4-Methyloxazoline Ring Formation.
Angew.Chem.Int.Ed.Engl., 60, 2021
6LTD
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BU of 6ltd by Molmil
Crystal Structure of Nonribosomal peptide synthetases (NRPS), FmoA3 (S1046A)-alpha-methyl-L-serine-AMP bound form
分子名称: ADENOSINE MONOPHOSPHATE, Nonribosomal peptide synthetase, alpha-methyl-L-serine
著者Senda, T, Harada, A.
登録日2020-01-22
公開日2021-03-10
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (4.1 Å)
主引用文献Structural and Functional Analyses of the Tridomain-Nonribosomal Peptide Synthetase FmoA3 for 4-Methyloxazoline Ring Formation.
Angew.Chem.Int.Ed.Engl., 60, 2021
8XJ0
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BU of 8xj0 by Molmil
Crystal structure of AmFab mutant - P40C/E165C (Light chain), G10C/P210C(Heavy chain)
分子名称: Adalimumab Fab Heavy chain, Adalimumab Fab Light chain
著者Senda, M, Yoshikawa, M, Nakamura, H, Ohkuri, T, Senda, T.
登録日2023-12-20
公開日2024-02-14
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Stabilization of adalimumab Fab through the introduction of disulfide bonds between the variable and constant domains.
Biochem.Biophys.Res.Commun., 700, 2024
8HW1
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Far-red light-harvesting complex of Antarctic alga Prasiola crispa
分子名称: (1S)-4-[(1E,3Z,5E,7E,9E,11E,13E,15E,17E)-3-(hydroxymethyl)-7,12,16-trimethyl-18-[(1R,4S)-2,6,6-trimethyl-4-oxidanyl-cyclohex-2-en-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]-3,5,5-trimethyl-cyclohex-3-en-1-ol, (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, CHLOROPHYLL A, ...
著者Kosugi, M, Kawasaki, M, Shibata, Y, Moriya, T, Adachi, N, Senda, T.
登録日2022-12-28
公開日2023-01-18
最終更新日2023-03-01
実験手法ELECTRON MICROSCOPY (3.13 Å)
主引用文献Uphill energy transfer mechanism for photosynthesis in an Antarctic alga.
Nat Commun, 14, 2023
4DVY
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Crystal structure of the Helicobacter pylori CagA oncoprotein
分子名称: Cytotoxicity-associated immunodominant antigen
著者Hayashi, T, Senda, M, Morohashi, H, Higashi, H, Horio, M, Kashiba, Y, Nagase, L, Sasaya, D, Shimizu, T, Venugopalan, N, Kumeta, H, Noda, N, Inagaki, F, Senda, T, Hatakeyama, M.
登録日2012-02-23
公開日2012-07-25
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Tertiary Structure-Function Analysis Reveals the Pathogenic Signaling Potentiation Mechanism of Helicobacter pylori Oncogenic Effector CagA
Cell Host Microbe, 12, 2012

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