1D76
| CRYSTAL AND MOLECULAR STRUCTURE OF A DNA FRAGMENT CONTAINING A 2-AMINO ADENINE MODIFICATION: THE RELATIONSHIP BETWEEN CONFORMATION, PACKING, AND HYDRATION IN Z-DNA HEXAMERS | 分子名称: | DNA (5'-D(*CP*GP*UP*(1AP)P*CP*G)-3') | 著者 | Schneider, B, Ginell, S.L, Jones, R, Gaffney, B, Berman, H.M. | 登録日 | 1992-05-19 | 公開日 | 1992-09-15 | 最終更新日 | 2024-02-07 | 実験手法 | X-RAY DIFFRACTION (1.3 Å) | 主引用文献 | Crystal and molecular structure of a DNA fragment containing a 2-aminoadenine modification: the relationship between conformation, packing, and hydration in Z-DNA hexamers. Biochemistry, 31, 1992
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1HHQ
| Role of active site resiude Lys16 in Nucleoside Diphosphate Kinase | 分子名称: | NUCLEOSIDE DIPHOSPHATE KINASE, SULFATE ION | 著者 | Schneider, B, Babolat, M, Xu, Y.W, Janin, J, Veron, M, Deville-Bonne, D. | 登録日 | 2000-12-26 | 公開日 | 2001-05-31 | 最終更新日 | 2023-12-13 | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | 主引用文献 | Mechanism of Phosphoryl Transfer by Nucleoside Diphosphate Kinase Ph-Dependence and Role of Active Site Lys16 and Tyr56 Residues Eur.J.Biochem., 268, 2001
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1BUX
| 3'-PHOSPHORYLATED NUCLEOTIDES BINDING TO NUCLEOSIDE DIPHOSPHATE KINASE | 分子名称: | 3'-PHOSPHATE-ADENOSINE-5'-PHOSPHATE SULFATE, NUCLEOSIDE DIPHOSPHATE KINASE | 著者 | Xu, Y, Schneider, B, Deville-Bonne, D, Veron, M, Janin, J. | 登録日 | 1998-09-07 | 公開日 | 1999-04-27 | 最終更新日 | 2024-02-07 | 実験手法 | X-RAY DIFFRACTION (2.8 Å) | 主引用文献 | 3'-Phosphorylated nucleotides are tight binding inhibitors of nucleoside diphosphate kinase activity. J.Biol.Chem., 273, 1998
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5O98
| Binary complex of Catharanthus roseus Vitrosamine Synthase with NADP+ | 分子名称: | Alcohol dehydrogenase 1, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | 著者 | Stavrinides, A.K, Tatsis, E.C, Dang, T.T, Caputi, L, Stevenson, C.E.M, Lawson, D.M, Schneider, B, O'Connor, S.E. | 登録日 | 2017-06-16 | 公開日 | 2018-02-21 | 最終更新日 | 2024-01-17 | 実験手法 | X-RAY DIFFRACTION (1.55 Å) | 主引用文献 | Discovery of a Short-Chain Dehydrogenase from Catharanthus roseus that Produces a New Monoterpene Indole Alkaloid. Chembiochem, 19, 2018
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5EH1
| Crystal structure of the extracellular part of receptor 2 of human interferon gamma | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, CYSTEINE, GLYCEROL, ... | 著者 | Kolenko, P, Mikulecky, P, Zahradnik, J, Dohnalek, J, Koval, T, Cerny, J, Necasova, I, Schneider, B. | 登録日 | 2015-10-27 | 公開日 | 2016-08-17 | 最終更新日 | 2020-07-29 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Crystal structure of human interferon-gamma receptor 2 reveals the structural basis for receptor specificity. Acta Crystallogr D Struct Biol, 72, 2016
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1F3F
| STRUCTURE OF THE H122G NUCLEOSIDE DIPHOSPHATE KINASE / D4T-TRIPHOSPHATE.MG COMPLEX | 分子名称: | 2',3'-DEHYDRO-2',3'-DEOXY-THYMIDINE 5'-DIPHOSPHATE, 2',3'-DEHYDRO-2',3'-DEOXY-THYMIDINE 5'-TRIPHOSPHATE, MAGNESIUM ION, ... | 著者 | Meyer, P, Schneider, B, Sarfati, S, Deville-Bonne, D, Guerreiro, C, Boretto, J, Janin, J, Veron, M, Canard, B. | 登録日 | 2000-06-02 | 公開日 | 2000-09-13 | 最終更新日 | 2024-02-07 | 実験手法 | X-RAY DIFFRACTION (1.85 Å) | 主引用文献 | Structural basis for activation of alpha-boranophosphate nucleotide analogues targeting drug-resistant reverse transcriptase. EMBO J., 19, 2000
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1F6T
| STRUCTURE OF THE NUCLEOSIDE DIPHOSPHATE KINASE/ALPHA-BORANO(RP)-TDP.MG COMPLEX | 分子名称: | 2*-DEOXY-THYMIDINE-5*-ALPHA BORANO DIPHOSPHATE (ISOMER RP), MAGNESIUM ION, PROTEIN (NUCLEOSIDE DIPHOSPHATE KINASE) | 著者 | Guerreiro, C, Boretto, J, Janin, J, Veron, M, Canard, B, Schneider, B, Sarfati, S, Deville-Bonne, D. | 登録日 | 2000-06-23 | 公開日 | 2000-09-13 | 最終更新日 | 2024-02-07 | 実験手法 | X-RAY DIFFRACTION (1.92 Å) | 主引用文献 | Structural basis for activation of alpha-boranophosphate nucleotide analogues targeting drug-resistant reverse transcriptase. EMBO J., 19, 2000
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362D
| THE STRUCTURE OF D(TGCGCA)2 AND A COMPARISON TO OTHER Z-DNA HEXAMERS | 分子名称: | COBALT HEXAMMINE(III), DNA (5'-D(*TP*GP*CP*GP*CP*A)-3') | 著者 | Harper, N.A, Brannigan, J.A, Buck, M, Lewis, R.J, Moore, M.H, Schneider, B. | 登録日 | 1997-08-20 | 公開日 | 1997-11-20 | 最終更新日 | 2023-08-02 | 実験手法 | X-RAY DIFFRACTION (1.3 Å) | 主引用文献 | Structure of d(TGCGCA)2 and a comparison to other DNA hexamers. Acta Crystallogr.,Sect.D, 54, 1998
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7Z81
| REP-related Chom18 variant with double TC mismatch | 分子名称: | Chom18-TC DNA, STRONTIUM ION | 著者 | Svoboda, J, Schneider, B, Berdar, D, Kolenko, P. | 登録日 | 2022-03-16 | 公開日 | 2023-03-29 | 最終更新日 | 2024-02-07 | 実験手法 | X-RAY DIFFRACTION (2.75 Å) | 主引用文献 | Conformation-based refinement of 18-mer DNA structures. Acta Crystallogr D Struct Biol, 79, 2023
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7Z7K
| REP-related Chom18 variant with double AT base pairing | 分子名称: | Chom18-AT DNA, STRONTIUM ION | 著者 | Svoboda, J, Schneider, B, Berdar, D, Kolenko, P. | 登録日 | 2022-03-16 | 公開日 | 2023-03-29 | 最終更新日 | 2024-02-07 | 実験手法 | X-RAY DIFFRACTION (2.7 Å) | 主引用文献 | Conformation-based refinement of 18-mer DNA structures. Acta Crystallogr D Struct Biol, 79, 2023
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7Z7W
| REP-related Chom18 variant with double GC base pairing | 分子名称: | Chom18-GC DNA, STRONTIUM ION | 著者 | Svoboda, J, Schneider, B, Berdar, D, Kolenko, P. | 登録日 | 2022-03-16 | 公開日 | 2023-03-29 | 最終更新日 | 2024-02-07 | 実験手法 | X-RAY DIFFRACTION (2.75 Å) | 主引用文献 | Conformation-based refinement of 18-mer DNA structures. Acta Crystallogr D Struct Biol, 79, 2023
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7Z7Z
| REP-related Chom18 variant with double TA base pair | 分子名称: | Chom18-TA DNA, STRONTIUM ION | 著者 | Svoboda, J, Schneider, B, Berdar, D, Kolenko, P. | 登録日 | 2022-03-16 | 公開日 | 2023-03-29 | 最終更新日 | 2024-02-07 | 実験手法 | X-RAY DIFFRACTION (2.9 Å) | 主引用文献 | Conformation-based refinement of 18-mer DNA structures. Acta Crystallogr D Struct Biol, 79, 2023
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7Z7U
| REP-related Chom18 variant with double CG base pair | 分子名称: | Chom18-CG DNA, STRONTIUM ION | 著者 | Svoboda, J, Kolenko, P, Berdar, D, Schneider, B. | 登録日 | 2022-03-16 | 公開日 | 2023-03-29 | 最終更新日 | 2024-02-07 | 実験手法 | X-RAY DIFFRACTION (2.75 Å) | 主引用文献 | Conformation-based refinement of 18-mer DNA structures. Acta Crystallogr D Struct Biol, 79, 2023
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7Z7M
| REP-related Chom18 variant with double CC mismatch | 分子名称: | Chom18-CC DNA, STRONTIUM ION | 著者 | Svoboda, J, Schneider, B, Berdar, D, Kolenko, P. | 登録日 | 2022-03-16 | 公開日 | 2023-03-29 | 最終更新日 | 2024-02-07 | 実験手法 | X-RAY DIFFRACTION (2.6 Å) | 主引用文献 | Conformation-based refinement of 18-mer DNA structures. Acta Crystallogr D Struct Biol, 79, 2023
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7Z82
| REP-related Chom18 variant with double AG mismatch | 分子名称: | Chom18-AG DNA, STRONTIUM ION | 著者 | Svoboda, J, Kolenko, P, Berdar, D, Schneider, B. | 登録日 | 2022-03-16 | 公開日 | 2023-03-29 | 最終更新日 | 2024-02-07 | 実験手法 | X-RAY DIFFRACTION (3.2 Å) | 主引用文献 | Conformation-based refinement of 18-mer DNA structures. Acta Crystallogr D Struct Biol, 79, 2023
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7Z7Y
| REP-related Chom18 variant with double GT mismatch | 分子名称: | Chom18-GT DNA, STRONTIUM ION | 著者 | Svoboda, J, Schneider, B, Berdar, D, Kolenko, P. | 登録日 | 2022-03-16 | 公開日 | 2023-03-29 | 最終更新日 | 2024-02-07 | 実験手法 | X-RAY DIFFRACTION (2.7 Å) | 主引用文献 | Conformation-based refinement of 18-mer DNA structures. Acta Crystallogr D Struct Biol, 79, 2023
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7Z7L
| REP-related Chom18 variant with double AC mismatch | 分子名称: | Chom18-AC DNA, STRONTIUM ION | 著者 | Svoboda, J, Schneider, B, Berdar, D, Kolenko, P. | 登録日 | 2022-03-16 | 公開日 | 2023-03-29 | 最終更新日 | 2024-02-07 | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | 主引用文献 | Conformation-based refinement of 18-mer DNA structures. Acta Crystallogr D Struct Biol, 79, 2023
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1MN9
| NDP kinase mutant (H122G) complex with RTP | 分子名称: | MAGNESIUM ION, NDP kinase, RIBAVIRIN TRIPHOSPHATE | 著者 | Gallois-montbrun, S, Chen, Y, Dutartre, H, Morera, S, Guerreiro, C, Mulard, L, Schneider, B, Janin, J, Canard, B, Veron, M, Deville-bonne, D. | 登録日 | 2002-09-05 | 公開日 | 2003-03-18 | 最終更新日 | 2021-11-10 | 実験手法 | X-RAY DIFFRACTION (2.9 Å) | 主引用文献 | Structural Analysis of the Activation of Ribavirin Analogs by NDP Kinase: Comparison with Other Ribavirin Targets MOL.PHARMACOL., 63, 2003
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7AVC
| DoBi scaffold based on PIH1D1 N-terminal domain | 分子名称: | GLYCEROL, PIH1 domain-containing protein 1, SODIUM ION | 著者 | Kolenko, P, Pham, N.P, Pavlicek, J, Mikulecky, P, Schneider, B. | 登録日 | 2020-11-05 | 公開日 | 2021-02-10 | 最終更新日 | 2024-01-31 | 実験手法 | X-RAY DIFFRACTION (1.2 Å) | 主引用文献 | Protein Binder (ProBi) as a New Class of Structurally Robust Non-Antibody Protein Scaffold for Directed Evolution. Viruses, 13, 2021
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5EPD
| Crystal structure of Glycerol Trinitrate Reductase XdpB from Agrobacterium sp. R89-1 (Apo form) | 分子名称: | Glycerol trinitrate reductase | 著者 | Kolenko, P, Zahradnik, J, Zuskova, I, Cerny, J, Palyzova, A, Kyslikova, E, Schneider, B. | 登録日 | 2015-11-11 | 公開日 | 2016-11-23 | 最終更新日 | 2019-02-27 | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | 主引用文献 | The crystal structure of XdpB, the bacterial old yellow enzyme, in an FMN-free form. PLoS ONE, 13, 2018
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1UCN
| X-ray structure of human nucleoside diphosphate kinase A complexed with ADP at 2 A resolution | 分子名称: | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ADENOSINE-5'-DIPHOSPHATE, CALCIUM ION, ... | 著者 | Chen, Y, Gallois-Montbrun, S, Schneider, B, Veron, M, Morera, S, Deville-Bonne, D, Janin, J. | 登録日 | 2003-04-16 | 公開日 | 2003-09-30 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | Nucleotide Binding to Nucleoside Diphosphate Kinases: X-ray Structure of Human NDPK-A in Complex with ADP and Comparison to Protein Kinases J.Mol.Biol., 332, 2003
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8BDU
| H33 variant of DoBi scaffold based on PIH1D1 N-terminal domain | 分子名称: | PIH1 domain-containing protein 1 | 著者 | Kolenko, P, Mikulecky, P, Pham, P.N, Schneider, B. | 登録日 | 2022-10-20 | 公開日 | 2023-08-16 | 最終更新日 | 2023-08-23 | 実験手法 | X-RAY DIFFRACTION (2.471 Å) | 主引用文献 | Diffraction anisotropy and paired refinement: crystal structure of H33, a protein binder to interleukin 10. J.Appl.Crystallogr., 56, 2023
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6F1E
| Crystal structure of olive flounder [Paralichthys olivaceus] interferon gamma at 2.3 Angstrom resolution | 分子名称: | Interferon gamma | 著者 | Kolenko, P, Kolarova, L, Zahradnik, J, Schneider, B. | 登録日 | 2017-11-21 | 公開日 | 2018-05-23 | 最終更新日 | 2018-05-30 | 実験手法 | X-RAY DIFFRACTION (2.296 Å) | 主引用文献 | Interferons type II and their receptors R1 and R2 in fish species: Evolution, structure, and function. Fish Shellfish Immunol., 79, 2018
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6GG1
| Structure of PROSS-edited human interleukin 24 | 分子名称: | Interleukin-24, NICKEL (II) ION, SULFATE ION | 著者 | Kolenko, P, Zahradnik, J, Kolarova, L, Schneider, B. | 登録日 | 2018-05-02 | 公開日 | 2019-05-15 | 最終更新日 | 2024-01-17 | 実験手法 | X-RAY DIFFRACTION (1.3 Å) | 主引用文献 | Flexible regions govern promiscuous binding of IL-24 to receptors IL-20R1 and IL-22R1. Febs J., 286, 2019
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1HLW
| STRUCTURE OF THE H122A MUTANT OF THE NUCLEOSIDE DIPHOSPHATE KINASE | 分子名称: | NUCLEOSIDE DIPHOSPHATE KINASE | 著者 | Admiraal, S.J, Meyer, P, Schneider, B, Deville-Bonne, D, Janin, J, Herschlag, D. | 登録日 | 2000-12-04 | 公開日 | 2001-02-28 | 最終更新日 | 2024-02-07 | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | 主引用文献 | Chemical rescue of phosphoryl transfer in a cavity mutant: a cautionary tale for site-directed mutagenesis. Biochemistry, 40, 2001
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