3K8P
 
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8ZA0
 | | Crystal structure of OR4K15 ribozyme | | Descriptor: | MAGNESIUM ION, RNA (5'-R(*UP*CP*UP*GP*GP*GP*CP*CP*AP*GP*GP*CP*AP*GP*G)-3') | | Authors: | Ren, Y, Huang, L. | | Deposit date: | 2024-04-24 | | Release date: | 2025-03-19 | | Method: | X-RAY DIFFRACTION (1.96 Å) | | Cite: | A general strategy for engineering GU base pairs to facilitate RNA crystallization.
Nucleic Acids Res., 53, 2025
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8ZAU
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8ZA4
 | | Crystal structure of OR4K15 ribozyme mutant - chainBDF C2U | | Descriptor: | RNA (5'-R(*CP*UP*UP*GP*CP*GP*CP*UP*CP*AP*AP*CP*CP*AP*GP*A)-3'), RNA (5'-R(*UP*CP*UP*GP*GP*GP*CP*CP*AP*GP*GP*CP*AP*GP*G)-3') | | Authors: | Ren, Y, Huang, L. | | Deposit date: | 2024-04-24 | | Release date: | 2025-03-19 | | Method: | X-RAY DIFFRACTION (2.85 Å) | | Cite: | A general strategy for engineering GU base pairs to facilitate RNA crystallization.
Nucleic Acids Res., 53, 2025
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8Z9K
 | | Crystal structure of LINE-1 ribozyme | | Descriptor: | RNA (41-MER), SODIUM ION | | Authors: | Ren, Y, Huang, L, Lin, X. | | Deposit date: | 2024-04-23 | | Release date: | 2025-03-19 | | Method: | X-RAY DIFFRACTION (3.86 Å) | | Cite: | A general strategy for engineering GU base pairs to facilitate RNA crystallization.
Nucleic Acids Res., 53, 2025
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8Z8U
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6LYG
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9EVV
 | | His579Leu variant of L-arabinonate dehydratase co-crystallized with 2-oxobutyrate | | Descriptor: | 2-KETOBUTYRIC ACID, FE2/S2 (INORGANIC) CLUSTER, L-arabinonate dehydratase, ... | | Authors: | Ren, Y, Rouvinen, J, Hakulinen, N. | | Deposit date: | 2024-04-02 | | Release date: | 2024-09-25 | | Method: | X-RAY DIFFRACTION (2.44 Å) | | Cite: | Unveiling the importance of the C-terminus in the sugar acid dehydratase of the IlvD/EDD superfamily.
Appl.Microbiol.Biotechnol., 108, 2024
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2JSD
 | | Solution structure of MMP20 complexed with NNGH | | Descriptor: | CALCIUM ION, Matrix metalloproteinase-20, N-ISOBUTYL-N-[4-METHOXYPHENYLSULFONYL]GLYCYL HYDROXAMIC ACID, ... | | Authors: | Arendt, Y, Banci, L, Bertini, I, Cantini, F, Cozzi, R, Del Conte, R, Gonnelli, L, Structural Proteomics in Europe (SPINE) | | Deposit date: | 2007-07-03 | | Release date: | 2007-11-20 | | Last modified: | 2024-05-29 | | Method: | SOLUTION NMR | | Cite: | Catalytic domain of MMP20 (Enamelysin) - the NMR structure of a new matrix metalloproteinase.
Febs Lett., 581, 2007
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5SUQ
 | | Crystal structure of the THO-Sub2 complex | | Descriptor: | 12-TUNGSTOPHOSPHATE, ATP-dependent RNA helicase SUB2, Tex1, ... | | Authors: | Ren, Y, Blobel, G. | | Deposit date: | 2016-08-03 | | Release date: | 2017-01-18 | | Last modified: | 2023-10-04 | | Method: | X-RAY DIFFRACTION (6 Å) | | Cite: | Structural and biochemical analyses of the DEAD-box ATPase Sub2 in association with THO or Yra1.
Elife, 6, 2017
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5SUP
 | | Crystal structure of the Sub2-Yra1 complex in association with RNA | | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, ATP-dependent RNA helicase SUB2, BERYLLIUM TRIFLUORIDE ION, ... | | Authors: | Ren, Y, Schmiege, P, Blobel, G. | | Deposit date: | 2016-08-03 | | Release date: | 2017-01-18 | | Last modified: | 2024-10-23 | | Method: | X-RAY DIFFRACTION (2.6 Å) | | Cite: | Structural and biochemical analyses of the DEAD-box ATPase Sub2 in association with THO or Yra1.
Elife, 6, 2017
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7DSC
 | | CALHM1 open state with disordered CTH | | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, Calcium homeostasis modulator 1 | | Authors: | Ren, Y, Yang, X, Shen, Y.Q. | | Deposit date: | 2020-12-30 | | Release date: | 2022-01-05 | | Last modified: | 2024-11-13 | | Method: | ELECTRON MICROSCOPY (3.5 Å) | | Cite: | Cryo-EM structure of the heptameric calcium homeostasis modulator 1 channel.
J.Biol.Chem., 298, 2022
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7DSD
 | | CALHM1 close state with disordered CTH | | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, Calcium homeostasis modulator 1 | | Authors: | Ren, Y, Yang, X, Shen, Y.Q. | | Deposit date: | 2020-12-30 | | Release date: | 2022-01-05 | | Last modified: | 2024-10-23 | | Method: | ELECTRON MICROSCOPY (2.9 Å) | | Cite: | Cryo-EM structure of the heptameric calcium homeostasis modulator 1 channel.
J.Biol.Chem., 298, 2022
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7DSE
 | | CALHM1 close state with ordered CTH | | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, Calcium homeostasis modulator 1 | | Authors: | Ren, Y, Yang, X, Shen, Y.Q. | | Deposit date: | 2020-12-30 | | Release date: | 2022-01-05 | | Last modified: | 2024-11-13 | | Method: | ELECTRON MICROSCOPY (3.2 Å) | | Cite: | Cryo-EM structure of the heptameric calcium homeostasis modulator 1 channel.
J.Biol.Chem., 298, 2022
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8Z8Q
 | | Crystal structure of 2'-dG riboswitch | | Descriptor: | 2'-DEOXY-GUANOSINE, RNA (71-MER) | | Authors: | Liao, W, Ren, Y, Huang, L. | | Deposit date: | 2024-04-22 | | Release date: | 2025-03-19 | | Method: | X-RAY DIFFRACTION (3.01 Å) | | Cite: | A general strategy for engineering GU base pairs to facilitate RNA crystallization.
Nucleic Acids Res., 53, 2025
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3MMY
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4OWR
 | | Vesiculoviral matrix (M) protein occupies nucleic acid binding site at nucleoporin pair Rae1-Nup98 | | Descriptor: | Matrix protein, Nuclear pore complex protein Nup98-Nup96, mRNA export factor | | Authors: | Ren, Y, Quan, B, Seo, H.S, Blobel, G. | | Deposit date: | 2014-02-03 | | Release date: | 2014-06-25 | | Last modified: | 2023-12-27 | | Method: | X-RAY DIFFRACTION (3.15 Å) | | Cite: | Vesiculoviral matrix (M) protein occupies nucleic acid binding site at nucleoporin pair (Rae1 Nup98).
Proc.Natl.Acad.Sci.USA, 111, 2014
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3ETU
 | | Crystal structure of yeast Dsl1p | | Descriptor: | Protein transport protein DSL1 | | Authors: | Ren, Y, Jeffrey, P.D, Hughson, F.M. | | Deposit date: | 2008-10-08 | | Release date: | 2009-01-20 | | Last modified: | 2023-12-27 | | Method: | X-RAY DIFFRACTION (2.4 Å) | | Cite: | Structural characterization of Tip20p and Dsl1p, subunits of the Dsl1p vesicle tethering complex.
Nat.Struct.Mol.Biol., 16, 2009
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3ETV
 | | Crystal structure of a Tip20p-Dsl1p fusion protein | | Descriptor: | Protein transport protein TIP20, Protein transport protein DSL1 chimera | | Authors: | Ren, Y, Jeffrey, P.D, Hughson, F.M. | | Deposit date: | 2008-10-08 | | Release date: | 2009-01-20 | | Last modified: | 2023-09-06 | | Method: | X-RAY DIFFRACTION (1.94 Å) | | Cite: | Structural characterization of Tip20p and Dsl1p, subunits of the Dsl1p vesicle tethering complex.
Nat.Struct.Mol.Biol., 16, 2009
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7LUV
 | | Cryo-EM structure of the yeast THO-Sub2 complex | | Descriptor: | ATP-dependent RNA helicase SUB2, THO complex subunit 2, THO complex subunit HPR1, ... | | Authors: | Xie, Y, Ren, Y. | | Deposit date: | 2021-02-23 | | Release date: | 2021-04-14 | | Last modified: | 2024-03-06 | | Method: | ELECTRON MICROSCOPY (3.7 Å) | | Cite: | Cryo-EM structure of the yeast TREX complex and coordination with the SR-like protein Gbp2.
Elife, 10, 2021
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4N4G
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4N4I
 | | Crystal structure of the Bromo-PWWP of the mouse zinc finger MYND-type containing 11 isoform alpha in complex with histone H3.3K36me3 | | Descriptor: | DI(HYDROXYETHYL)ETHER, PHOSPHATE ION, Peptide from Histone H3.3, ... | | Authors: | Li, Y, Ren, Y, Li, H. | | Deposit date: | 2013-10-08 | | Release date: | 2014-03-05 | | Last modified: | 2023-11-08 | | Method: | X-RAY DIFFRACTION (1.999 Å) | | Cite: | ZMYND11 links histone H3.3K36me3 to transcription elongation and tumour suppression
Nature, 508, 2014
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3FHN
 | | Structure of Tip20p | | Descriptor: | Protein transport protein TIP20 | | Authors: | Tripathi, A, Ren, Y, Jeffrey, P.D, Hughson, F.M. | | Deposit date: | 2008-12-09 | | Release date: | 2009-01-20 | | Last modified: | 2024-11-20 | | Method: | X-RAY DIFFRACTION (3 Å) | | Cite: | Structural characterization of Tip20p and Dsl1p, subunits of the Dsl1p vesicle tethering complex.
Nat.Struct.Mol.Biol., 16, 2009
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3J7X
 | | Capsid Expansion Mechanism Of Bacteriophage T7 Revealed By Multi-State Atomic Models Derived From Cryo-EM Reconstructions | | Descriptor: | Major capsid protein 10A | | Authors: | Guo, F, Liu, Z, Fang, P.A, Zhang, Q, Wright, E.T, Wu, W, Zhang, C, Vago, F, Ren, Y, Jakata, J, Chiu, W, Serwer, P, Jiang, W. | | Deposit date: | 2014-08-12 | | Release date: | 2014-10-15 | | Last modified: | 2024-02-21 | | Method: | ELECTRON MICROSCOPY (3.6 Å) | | Cite: | Capsid expansion mechanism of bacteriophage T7 revealed by multistate atomic models derived from cryo-EM reconstructions.
Proc.Natl.Acad.Sci.USA, 111, 2014
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3J7V
 | | Capsid Expansion Mechanism Of Bacteriophage T7 Revealed By Multi-State Atomic Models Derived From Cryo-EM Reconstructions | | Descriptor: | Major capsid protein 10A | | Authors: | Guo, F, Liu, Z, Fang, P.A, Zhang, Q, Wright, E.T, Wu, W, Zhang, C, Vago, F, Ren, Y, Jakata, J, Chiu, W, Serwer, P, Jiang, W. | | Deposit date: | 2014-08-12 | | Release date: | 2014-10-15 | | Last modified: | 2024-02-21 | | Method: | ELECTRON MICROSCOPY (4.6 Å) | | Cite: | Capsid expansion mechanism of bacteriophage T7 revealed by multistate atomic models derived from cryo-EM reconstructions.
Proc.Natl.Acad.Sci.USA, 111, 2014
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