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3LHX
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BU of 3lhx by Molmil
Crystal structure of a Ketodeoxygluconokinase (kdgk) from Shigella flexneri
Descriptor: Ketodeoxygluconokinase
Authors:Ramagopal, U.A, Toro, R, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2010-01-23
Release date:2010-03-02
Last modified:2021-02-10
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Crystal structure of a Ketodeoxygluconokinase (kdgk) from Shigella flexneri
To be Published
3LME
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BU of 3lme by Molmil
Structure of probable translation initiation inhibitor from (RPA2473) from Rhodopseudomonas palustris
Descriptor: Possible translation initiation inhibitor, SULFATE ION
Authors:Ramagopal, U.A, Toro, R, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2010-01-29
Release date:2010-03-02
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.74 Å)
Cite:Structure of probable translation initiation inhibitor from (RPA2473) from Rhodopseudomonas palustris
To be published
2OGF
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BU of 2ogf by Molmil
Crystal structure of protein MJ0408 from Methanococcus jannaschii, Pfam DUF372
Descriptor: 8-OXOGUANINE, GLYCEROL, Hypothetical protein MJ0408, ...
Authors:Ramagopal, U.A, Toro, R, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2007-01-05
Release date:2007-01-16
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Crystal structure of hypothetical protein MJ0408 from Methanococcus jannaschii
To be Published
2NX2
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BU of 2nx2 by Molmil
Crystal structure of protein ypsA from Bacillus subtilis, Pfam DUF1273
Descriptor: Hypothetical protein ypsA
Authors:Ramagopal, U.A, Alvarado, J, Dickey, M, Reyes, C, Toro, R, Bain, K, Gheyi, T, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2006-11-16
Release date:2006-12-19
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of hypothetical protein ypsA from Bacillus subtilis.
To be Published
2P67
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BU of 2p67 by Molmil
Crystal structure of LAO/AO transport system kinase
Descriptor: CHLORIDE ION, LAO/AO transport system kinase, SODIUM ION
Authors:Ramagopal, U.A, Adams, J, Rodgers, L, Toro, R, Bain, K, Rutter, M, Schwinn, K, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2007-03-16
Release date:2007-04-03
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of LAO/AO transport system kinase
To be Published
2PWW
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BU of 2pww by Molmil
Crystal structure of ABC2387 from Bacillus clausii
Descriptor: 1,2-ETHANEDIOL, Uncharacterized protein
Authors:Ramagopal, U.A, Freeman, J, Lau, C, Toro, R, Bain, K, Rodgers, L, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2007-05-14
Release date:2007-05-22
Last modified:2021-02-03
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Crystal structure of ABC2387 from Bacillus clausii.
To be Published
2PJU
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BU of 2pju by Molmil
Crystal structure of propionate catabolism operon regulatory protein prpR
Descriptor: Propionate catabolism operon regulatory protein
Authors:Ramagopal, U.A, Toro, R, Gilmore, M, Wu, B, Koss, J, Groshong, C, Gheyi, T, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2007-04-16
Release date:2007-05-22
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of propionate catabolism operon regulatory protein prpR
To be Published
2PPG
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BU of 2ppg by Molmil
Crystal structure of putative isomerase from Sinorhizobium meliloti
Descriptor: Putative isomerase
Authors:Ramagopal, U.A, Toro, R, Dickey, M, Logan, C, Groshong, C, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2007-04-30
Release date:2007-05-22
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Crystal structure of putative isomerase from Sinorhizobium meliloti.
To be Published
2Q5C
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BU of 2q5c by Molmil
Crystal structure of NtrC family transcriptional regulator from Clostridium acetobutylicum
Descriptor: GLYCEROL, NtrC family transcriptional regulator, SULFATE ION
Authors:Ramagopal, U.A, Dickey, M, Toro, R, Iizuka, M, Groshong, K, Rodgers, L, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2007-05-31
Release date:2007-07-03
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Crystal structure of NtrC family transcriptional regulator from Clostridium acetobutylicum.
To be Published
2QF9
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BU of 2qf9 by Molmil
Crystal structure of putative secreted protein DUF305 from Streptomyces coelicolor
Descriptor: 1,2-ETHANEDIOL, Putative secreted protein
Authors:Ramagopal, U.A, Rutter, M, Adams, J, Toro, R, Groshong, C, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2007-06-27
Release date:2007-07-17
Last modified:2021-02-03
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Structure of putative secreted protein DUF305 from Streptomyces coelicolor.
To be Published
2QKP
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BU of 2qkp by Molmil
Crystal structure of C-terminal domain of SMU_1151c from Streptococcus mutans
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, Uncharacterized protein
Authors:Ramagopal, U.A, Toro, R, Gilmore, M, Wu, B, Bain, K, Gheyi, T, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2007-07-11
Release date:2007-07-24
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structure of C-terminal domain of SMU_1151c from Streptococcus mutans.
To be Published
2QR4
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BU of 2qr4 by Molmil
Crystal structure of oligoendopeptidase-F from Enterococcus faecium
Descriptor: Peptidase M3B, oligoendopeptidase F
Authors:Ramagopal, U.A, Toro, R, Meyer, A.J, Freeman, J, Bain, K, Rodgers, L, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2007-07-27
Release date:2007-08-14
Last modified:2021-02-03
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of oligoendopeptidase-F from Enterococcus faecium.
To be Published
2QSR
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BU of 2qsr by Molmil
Crystal structure of C-terminal domain of transcription-repair coupling factor
Descriptor: Transcription-repair coupling factor
Authors:Ramagopal, U.A, Toro, R, Gilmore, M, Bain, K, Iizuka, M, Wasserman, S, Rodgers, L, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2007-07-31
Release date:2007-09-11
Last modified:2021-02-03
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structure of C-terminal domain of transcription-repair coupling factor.
To be Published
2R5X
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BU of 2r5x by Molmil
Crystal structure of uncharacterized conserved protein YugN from Geobacillus kaustophilus HTA426
Descriptor: Uncharacterized conserved protein
Authors:Ramagopal, U.A, Patskovsky, Y, Shi, W, Toro, R, Meyer, A.J, Freeman, J, Wu, B, Koss, J, Groshong, C, Rodgers, L, Wasserman, S, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2007-09-04
Release date:2007-09-11
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:Crystal structure of uncharacterized protein YugN from Geobacillus kaustophilus HTA426.
To be Published
2R9G
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BU of 2r9g by Molmil
Crystal structure of the C-terminal fragment of AAA ATPase from Enterococcus faecium
Descriptor: AAA ATPase, central region, ACETATE ION, ...
Authors:Ramagopal, U.A, Patskovsky, Y, Bonanno, J.B, Shi, W, Toro, R, Meyer, A.J, Rutter, M, Wu, B, Groshong, C, Gheyi, T, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2007-09-12
Release date:2007-10-02
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Crystal Structure of the C-Terminal Domain of AAA ATPase from Enterococcus faecium.
To be Published
4P5N
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BU of 4p5n by Molmil
Structure of CNAG_02591 from Cryptococcus neoformans
Descriptor: CADMIUM ION, GLYCEROL, Hypothetical protein CNAG_02591, ...
Authors:Ramagopal, U.A, McClelland, E.E, Toro, R, Casadevall, A, Almo, S.C, New York Structural Genomics Research Consortium (NYSGRC)
Deposit date:2014-03-18
Release date:2014-05-28
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:A Small Protein Associated with Fungal Energy Metabolism Affects the Virulence of Cryptococcus neoformans in Mammals.
Plos Pathog., 12, 2016
5Y07
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BU of 5y07 by Molmil
Crystal structure of adenine phosphoribosyltransferase from Yersinia pseudotuberculosis with PRPP.
Descriptor: 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose, Adenine phosphoribosyltransferase, MAGNESIUM ION, ...
Authors:Pavithra, G.C, Ramagopal, U.A.
Deposit date:2017-07-25
Release date:2018-08-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Crystal structure of adenine phosphoribosyltransferase from Yersinia pseudotuberculosis with PRPP
To be published
3NWM
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BU of 3nwm by Molmil
Crystal structure of a single chain construct composed of MHC class I H-2Kd, beta-2microglobulin and a peptide which is an autoantigen for type 1 diabetes
Descriptor: Peptide/beta-2microglobulin/MHC class I H-2Kd chimeric protein
Authors:Ramagopal, U.A, Samanta, D, Nathenson, S.G, Almo, S.C.
Deposit date:2010-07-09
Release date:2011-07-06
Last modified:2017-06-28
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural and functional characterization of a single-chain peptide-MHC molecule that modulates both naive and activated CD8+ T cells.
Proc.Natl.Acad.Sci.USA, 108, 2011
3R0N
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BU of 3r0n by Molmil
Crystal Structure of the Immunoglobulin variable domain of Nectin-2
Descriptor: CHLORIDE ION, MAGNESIUM ION, Poliovirus receptor-related protein 2
Authors:Ramagopal, U.A, Samanta, D, Nathenson, S.G, Almo, S.C, New York Structural Genomics Research Consortium (NYSGRC), Atoms-to-Animals: The Immune Function Network (IFN)
Deposit date:2011-03-08
Release date:2011-04-27
Last modified:2012-11-07
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structure of Nectin-2 reveals determinants of homophilic and heterophilic interactions that control cell-cell adhesion.
Proc.Natl.Acad.Sci.USA, 109, 2012
2OYC
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BU of 2oyc by Molmil
Crystal structure of human pyridoxal phosphate phosphatase
Descriptor: Pyridoxal phosphate phosphatase, SODIUM ION, TUNGSTATE(VI)ION
Authors:Ramagopal, U.A, Freeman, J, Izuka, M, Toro, R, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2007-02-21
Release date:2007-03-13
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Structural genomics of protein phosphatases.
J.Struct.Funct.Genom., 8, 2007
2P69
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BU of 2p69 by Molmil
Crystal Structure of Human Pyridoxal Phosphate Phosphatase with PLP
Descriptor: CALCIUM ION, PYRIDOXAL-5'-PHOSPHATE, Pyridoxal phosphate phosphatase
Authors:Ramagopal, U.A, Freeman, J, Izuka, M, Toro, R, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2007-03-16
Release date:2007-04-03
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural genomics of protein phosphatases.
J.Struct.Funct.Genom., 8, 2007
2P27
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BU of 2p27 by Molmil
Crystal Structure of Human Pyridoxal Phosphate Phosphatase with Mg2+ at 1.9 A resolution
Descriptor: MAGNESIUM ION, Pyridoxal phosphate phosphatase
Authors:Ramagopal, U.A, Freeman, J, Izuka, M, Toro, R, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2007-03-07
Release date:2007-03-13
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural genomics of protein phosphatases.
J.Struct.Funct.Genom., 8, 2007
2P5Z
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BU of 2p5z by Molmil
The E. coli c3393 protein is a component of the type VI secretion system and exhibits structural similarity to T4 bacteriophage tail proteins gp27 and gp5
Descriptor: Type VI secretion system component
Authors:Ramagopal, U.A, Bonanno, J.B, Sridhar, V, Lau, C, Toro, R, Gheyi, T, Maletic, M, Freeman, J.C, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2007-03-16
Release date:2007-04-03
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Type VI secretion apparatus and phage tail-associated protein complexes share a common evolutionary origin.
Proc.Natl.Acad.Sci.Usa, 106, 2009
5B6H
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BU of 5b6h by Molmil
Crystal structure of an APRT from Yersinia pseudotuberculosis in complex with AMP.
Descriptor: ADENOSINE MONOPHOSPHATE, Adenine phosphoribosyltransferase, CHLORIDE ION, ...
Authors:Pavithra, G.C, Ramagopal, U.A.
Deposit date:2016-05-27
Release date:2017-05-31
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of an APRT from Yersinia pseudotuberculosis in complex with AMP.
To be published
7FDS
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BU of 7fds by Molmil
High resolution crystal structure of LpqH from Mycobacterium tuberculosis
Descriptor: Lipoprotein LpqH
Authors:Kundapura, S.V, Chatterjee, S, Samanta, D, Ramagopal, U.A.
Deposit date:2021-07-17
Release date:2021-12-15
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.258 Å)
Cite:High-resolution crystal structure of LpqH, an immunomodulatory surface lipoprotein of Mycobacterium tuberculosis reveals a distinct fold and a conserved cleft on its surface.
Int.J.Biol.Macromol., 210, 2022

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