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3KB5
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BU of 3kb5 by Molmil
PRY-SPRY domain of human TRIM72
分子名称: Tripartite motif-containing protein 72
著者Park, E.Y, Kwon, O.-B, Jeong, B.-C, Song, H.K.
登録日2009-10-20
公開日2009-12-22
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Crystal structure of PRY-SPRY domain of human TRIM72
Proteins, 2009
2DS6
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BU of 2ds6 by Molmil
Structure of the ZBD in the tetragonal crystal form
分子名称: ATP-dependent Clp protease ATP-binding subunit clpX, ZINC ION
著者Park, E.Y, Lee, B.G, Hong, S.B, Song, H.K.
登録日2006-06-22
公開日2007-02-13
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural Basis of SspB-tail Recognition by the Zinc Binding Domain of ClpX.
J.Mol.Biol., 367, 2007
2DS7
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BU of 2ds7 by Molmil
Structure of the ZBD in the hexagonal crystal form
分子名称: ATP-dependent Clp protease ATP-binding subunit clpX, ZINC ION
著者Park, E.Y, Lee, B.G, Hong, S.B, Song, H.K.
登録日2006-06-22
公開日2007-02-13
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural Basis of SspB-tail Recognition by the Zinc Binding Domain of ClpX.
J.Mol.Biol., 367, 2007
2DS8
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BU of 2ds8 by Molmil
Structure of the ZBD-XB complex
分子名称: ATP-dependent Clp protease ATP-binding subunit clpX, SspB-tail peptide, ZINC ION
著者Park, E.Y, Lee, B.G, Hong, S.B, Kim, H.W, Song, H.K.
登録日2006-06-22
公開日2007-02-13
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structural Basis of SspB-tail Recognition by the Zinc Binding Domain of ClpX.
J.Mol.Biol., 367, 2007
2H8G
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BU of 2h8g by Molmil
5'-Methylthioadenosine Nucleosidase from Arabidopsis thaliana
分子名称: 5'-Methylthioadenosine Nucleosidase, ADENINE
著者Park, E.Y, Oh, S.I, Nam, M.J, Shin, J.S, Kim, K.N, Song, H.K.
登録日2006-06-07
公開日2006-10-10
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Crystal structure of 5'-methylthioadenosine nucleosidase from Arabidopsis thaliana at 1.5-A resolution
Proteins, 65, 2006
2DS5
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BU of 2ds5 by Molmil
Structure of the ZBD in the orthorhomibic crystal from
分子名称: ATP-dependent Clp protease ATP-binding subunit clpX, CALCIUM ION, TETRAETHYLENE GLYCOL, ...
著者Song, H.K, Park, E.Y, Lee, B.G, Hong, S.B.
登録日2006-06-22
公開日2007-02-13
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structural Basis of SspB-tail Recognition by the Zinc Binding Domain of ClpX.
J.Mol.Biol., 367, 2007
1TX6
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BU of 1tx6 by Molmil
trypsin:BBI complex
分子名称: Bowman-Birk type trypsin inhibitor, CALCIUM ION, Trypsin
著者Song, H.K, Park, E.Y, Kim, J.A, Kim, H.W, Kim, Y.S.
登録日2004-07-02
公開日2005-03-08
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of the Bowman-Birk inhibitor from barley seeds in ternary complex with porcine trypsin
J.Mol.Biol., 343, 2004
3BSF
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BU of 3bsf by Molmil
Crystal Structure of the MTA/SAH nucleosidase
分子名称: ADENINE, At4g34840
著者Song, H.K, Park, E.Y, Choi, W.-S.
登録日2007-12-23
公開日2009-02-24
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Crystal structure of the MTA/SAH nucleosidase
To be Published
7WLG
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BU of 7wlg by Molmil
Cryo-EM structure of GH31 alpha-1,3-glucosidase from Lactococcus lactis subsp. cremoris
分子名称: Alpha-xylosidase
著者Ikegaya, M, Moriya, T, Adachi, N, Kawasaki, M, Park, E.Y, Miyazaki, T.
登録日2022-01-13
公開日2022-03-30
最終更新日2022-05-11
実験手法ELECTRON MICROSCOPY (2.73 Å)
主引用文献Structural basis of the strict specificity of a bacterial GH31 alpha-1,3-glucosidase for nigerooligosaccharides.
J.Biol.Chem., 298, 2022
1R6M
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BU of 1r6m by Molmil
Crystal Structure Of The tRNA Processing Enzyme Rnase pH From Pseudomonas Aeruginosa In Complex With Phosphate
分子名称: PHOSPHATE ION, Ribonuclease PH
著者Choi, J.M, Park, E.Y, Kim, J.H, Chang, S.K, Cho, Y.
登録日2003-10-15
公開日2004-02-17
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Probing the functional importance of the hexameric ring structure of RNase PH
J.BIOL.CHEM., 279, 2004
1R6L
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BU of 1r6l by Molmil
Crystal Structure Of The tRNA Processing Enzyme Rnase pH From Pseudomonas Aeruginosa
分子名称: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, Ribonuclease PH, SULFATE ION
著者Choi, J.M, Park, E.Y, Kim, J.H, Chang, S.K, Cho, Y.
登録日2003-10-15
公開日2004-02-17
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Probing the functional importance of the hexameric ring structure of RNase PH
J.BIOL.CHEM., 279, 2004
3KTI
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BU of 3kti by Molmil
Structure of ClpP in complex with ADEP1
分子名称: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, ATP-dependent Clp protease proteolytic subunit, Acyldepsipeptide 1, ...
著者Lee, B.-G, Brotz-Oesterhelt, H, Song, H.K.
登録日2009-11-25
公開日2010-03-23
最終更新日2013-02-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structures of ClpP in complex with acyldepsipeptide antibiotics reveal its activation mechanism
Nat.Struct.Mol.Biol., 17, 2010
3KTK
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BU of 3ktk by Molmil
Structure of ClpP in complex with ADEP2 in triclinic crystal form
分子名称: ATP-dependent Clp protease proteolytic subunit, Acyldepsipeptide 2
著者Lee, B.-G, Brotz-Oesterhelt, H, Song, H.K.
登録日2009-11-25
公開日2010-03-23
最終更新日2012-12-12
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structures of ClpP in complex with acyldepsipeptide antibiotics reveal its activation mechanism
Nat.Struct.Mol.Biol., 17, 2010
3KTG
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BU of 3ktg by Molmil
Structure of ClpP from Bacillus subtilis in monoclinic crystal form
分子名称: ATP-dependent Clp protease proteolytic subunit
著者Lee, B.-G, Brotz-Oesterhelt, H, Song, H.K.
登録日2009-11-25
公開日2010-03-23
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structures of ClpP in complex with acyldepsipeptide antibiotics reveal its activation mechanism
Nat.Struct.Mol.Biol., 17, 2010
3KTH
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BU of 3kth by Molmil
Structure of ClpP from Bacillus subtilis in orthorombic crystal form
分子名称: ATP-dependent Clp protease proteolytic subunit
著者Lee, B.-G, Brotz-Oesterhelt, H, Song, H.K.
登録日2009-11-25
公開日2010-03-23
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structures of ClpP in complex with acyldepsipeptide antibiotics reveal its activation mechanism
Nat.Struct.Mol.Biol., 17, 2010
7BWB
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BU of 7bwb by Molmil
Bombyx mori GH32 beta-fructofuranosidase BmSUC1
分子名称: Beta-fructofuranosidase
著者Miyazaki, T, Oba, N.
登録日2020-04-14
公開日2020-11-04
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural insight into the substrate specificity of Bombyx mori beta-fructofuranosidase belonging to the glycoside hydrolase family 32.
Insect Biochem.Mol.Biol., 127, 2020
7BWC
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BU of 7bwc by Molmil
Bombyx mori GH32 beta-fructofuranosidase BmSUC1 mutant D63A in complex with sucrose
分子名称: Beta-fructofuranosidase, beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose
著者Miyazaki, T, Oba, N.
登録日2020-04-14
公開日2020-11-04
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Structural insight into the substrate specificity of Bombyx mori beta-fructofuranosidase belonging to the glycoside hydrolase family 32.
Insect Biochem.Mol.Biol., 127, 2020
3KTJ
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BU of 3ktj by Molmil
Structure of ClpP in complex with ADEP2 in monoclinic crystal form
分子名称: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, ATP-dependent Clp protease proteolytic subunit, Acyldepsipeptide 2
著者Lee, B.-G, Brotz-Oesterhelt, H, Song, H.K.
登録日2009-11-25
公開日2010-03-23
最終更新日2012-12-12
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structures of ClpP in complex with acyldepsipeptide antibiotics reveal its activation mechanism
Nat.Struct.Mol.Biol., 17, 2010
5ZOH
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BU of 5zoh by Molmil
Crystal structure of a far-red light-absorbing form of AnPixJg2_BV4 in complex with biliverdin
分子名称: BILIVERDINE IX ALPHA, GLYCEROL, Methyl-accepting chemotaxis protein
著者Miyazaki, T, Fushimi, K, Narikawa, R.
登録日2018-04-13
公開日2019-04-17
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Rational conversion of chromophore selectivity of cyanobacteriochromes to accept mammalian intrinsic biliverdin.
Proc. Natl. Acad. Sci. U.S.A., 116, 2019
6ITC
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BU of 6itc by Molmil
Structure of a substrate engaged SecA-SecY protein translocation machine
分子名称: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, ...
著者Ma, C.Y, Wu, X.F, Sun, D.J, Park, E.Y, Rapoport, T.A, Gao, N, Long, L.
登録日2018-11-21
公開日2019-06-12
最終更新日2023-11-15
実験手法ELECTRON MICROSCOPY (3.45 Å)
主引用文献Structure of the substrate-engaged SecA-SecY protein translocation machine.
Nat Commun, 10, 2019
8IUA
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BU of 8iua by Molmil
Crystal structure of GH66 endodextranase from Flavobacterium johnsoniae in complex with isomaltose
分子名称: Candidate dextranase Glycoside hydrolase family 66, SODIUM ION, alpha-D-glucopyranose-(1-6)-alpha-D-glucopyranose, ...
著者Nakamura, S, Miyazaki, T.
登録日2023-03-24
公開日2023-06-14
最終更新日2023-07-12
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Bacteroidota polysaccharide utilization system for branched dextran exopolysaccharides from lactic acid bacteria.
J.Biol.Chem., 299, 2023
8IU9
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BU of 8iu9 by Molmil
Crystal structure of GH66 endodextranase from Flavobacterium johnsoniae in complex with glucose
分子名称: Candidate dextranase Glycoside hydrolase family 66, SODIUM ION, alpha-D-glucopyranose, ...
著者Nakamura, S, Miyazaki, T.
登録日2023-03-24
公開日2023-06-14
最終更新日2023-07-12
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Bacteroidota polysaccharide utilization system for branched dextran exopolysaccharides from lactic acid bacteria.
J.Biol.Chem., 299, 2023
8IU8
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BU of 8iu8 by Molmil
Crystal structure of GH66 endodextranase from Flavobacterium johnsoniae
分子名称: Candidate dextranase Glycoside hydrolase family 66, GLYCEROL
著者Nakamura, S, Miyazaki, T.
登録日2023-03-24
公開日2023-06-14
最終更新日2023-07-12
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Bacteroidota polysaccharide utilization system for branched dextran exopolysaccharides from lactic acid bacteria.
J.Biol.Chem., 299, 2023
8IUC
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BU of 8iuc by Molmil
Crystal structure of GH65 alpha-1,2-glucosidase from Flavobacterium johnsoniae in complex with isomaltose
分子名称: 1,2-ETHANEDIOL, Candidate alpha glycoside phosphorylase Glycoside hydrolase family 65, alpha-D-glucopyranose-(1-6)-beta-D-glucopyranose
著者Nakamura, S, Miyazaki, T.
登録日2023-03-24
公開日2023-06-14
最終更新日2023-07-12
実験手法X-RAY DIFFRACTION (1.56 Å)
主引用文献Bacteroidota polysaccharide utilization system for branched dextran exopolysaccharides from lactic acid bacteria.
J.Biol.Chem., 299, 2023
8IUB
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BU of 8iub by Molmil
Crystal structure of GH66 endodextranase from Flavobacterium johnsoniae in complex with isomaltotriose
分子名称: Candidate dextranase Glycoside hydrolase family 66, SODIUM ION, SULFATE ION, ...
著者Nakamura, S, Miyazaki, T.
登録日2023-03-24
公開日2023-06-14
最終更新日2023-07-12
実験手法X-RAY DIFFRACTION (1.18 Å)
主引用文献Bacteroidota polysaccharide utilization system for branched dextran exopolysaccharides from lactic acid bacteria.
J.Biol.Chem., 299, 2023

 

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