1EYT
| CRYSTAL STRUCTURE OF HIGH-POTENTIAL IRON-SULFUR PROTEIN FROM THERMOCHROMATIUM TEPIDUM | 分子名称: | HIGH-POTENTIAL IRON-SULFUR PROTEIN, IRON/SULFUR CLUSTER | 著者 | Nogi, T, Fathir, I, Kobayashi, M, Nozawa, T, Miki, K. | 登録日 | 2000-05-08 | 公開日 | 2000-12-13 | 最終更新日 | 2024-02-07 | 実験手法 | X-RAY DIFFRACTION (1.5 Å) | 主引用文献 | Crystal structures of photosynthetic reaction center and high-potential iron-sulfur protein from Thermochromatium tepidum: thermostability and electron transfer. Proc.Natl.Acad.Sci.USA, 97, 2000
|
|
1EYS
| CRYSTAL STRUCTURE OF PHOTOSYNTHETIC REACTION CENTER FROM A THERMOPHILIC BACTERIUM, THERMOCHROMATIUM TEPIDUM | 分子名称: | 2-O-octyl-beta-D-glucopyranose, BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, ... | 著者 | Nogi, T, Fathir, I, Kobayashi, M, Nozawa, T, Miki, K. | 登録日 | 2000-05-08 | 公開日 | 2000-12-13 | 最終更新日 | 2020-07-29 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | Crystal structures of photosynthetic reaction center and high-potential iron-sulfur protein from Thermochromatium tepidum: thermostability and electron transfer. Proc.Natl.Acad.Sci.USA, 97, 2000
|
|
2ZPK
| Crystal structure of P20.1 Fab fragment in complex with its antigen peptide | 分子名称: | GLYCEROL, IgG1-lambda P20.1 Fab (heavy chain), IgG1-lambda P20.1 Fab (light chain), ... | 著者 | Nogi, T, Sanagawa, T, Takagi, J. | 登録日 | 2008-07-16 | 公開日 | 2008-12-23 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Novel affinity tag system using structurally defined antibody-tag interaction: application to single-step protein purification Protein Sci., 17, 2008
|
|
1IU1
| Crystal structure of human gamma1-adaptin ear domain | 分子名称: | gamma1-adaptin | 著者 | Nogi, T, Shiba, Y, Kawasaki, M, Shiba, T, Matsugaki, N, Igarashi, N, Suzuki, M, Kato, R, Takatsu, H, Nakayama, K, Wakatsuki, S. | 登録日 | 2002-02-19 | 公開日 | 2002-07-10 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Structural basis for the accessory protein recruitment by the gamma-adaptin ear domain. Nat.Struct.Biol., 9, 2002
|
|
3AL8
| Plexin A2 / Semaphorin 6A complex | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Plexin-A2, ... | 著者 | Nogi, T, Yasui, N, Mihara, E, Takagi, J. | 登録日 | 2010-07-28 | 公開日 | 2010-10-06 | 最終更新日 | 2020-07-29 | 実験手法 | X-RAY DIFFRACTION (3.6 Å) | 主引用文献 | Structural basis for semaphorin signalling through the plexin receptor. Nature, 467, 2010
|
|
3AL9
| Mouse Plexin A2 extracellular domain | 分子名称: | 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, Plexin-A2 | 著者 | Nogi, T, Yasui, N, Mihara, E, Takagi, J. | 登録日 | 2010-07-28 | 公開日 | 2010-10-06 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | 主引用文献 | Structural basis for semaphorin signalling through the plexin receptor. Nature, 467, 2010
|
|
2DDU
| Crystal structure of the third repeat domain of reelin | 分子名称: | CALCIUM ION, CHLORIDE ION, MAGNESIUM ION, ... | 著者 | Nogi, T, Yasui, N, Takagi, J. | 登録日 | 2006-02-03 | 公開日 | 2006-09-26 | 最終更新日 | 2011-10-05 | 実験手法 | X-RAY DIFFRACTION (2.05 Å) | 主引用文献 | Structure of a signaling-competent reelin fragment revealed by X-ray crystallography and electron tomography Embo J., 25, 2006
|
|
5B4Y
| Crystal structure of the LA12 fragment of ApoER2 | 分子名称: | CALCIUM ION, Low-density lipoprotein receptor-related protein 8 | 著者 | Nogi, T, Tabata, S, Hirai, H, Yasui, N, Takagi, J. | 登録日 | 2016-04-20 | 公開日 | 2017-04-26 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | 主引用文献 | Crystal structure of the ectodomain from a LDLR close homologue in complex with its physiological ligand. To Be Published
|
|
3AFC
| Mouse Semaphorin 6A extracellular domain | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Semaphorin-6A | 著者 | Yasui, N, Nogi, T, Mihara, E, Takagi, J. | 登録日 | 2010-02-26 | 公開日 | 2010-10-06 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | 主引用文献 | Structural basis for semaphorin signalling through the plexin receptor. Nature, 467, 2010
|
|
3WKL
| |
3WKM
| The periplasmic PDZ tandem fragment of the RseP homologue from Aquifex aeolicus in complex with the Fab fragment | 分子名称: | MOUSE IGG1-KAPPA FAB (HEAVY CHAIN), MOUSE IGG1-KAPPA FAB (LIGHT CHAIN), Putative zinc metalloprotease aq_1964 | 著者 | Nogi, T, Tabata, S, Tamura-kawakami, K, Takagi, J. | 登録日 | 2013-10-28 | 公開日 | 2013-12-18 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | A Structure-Based Model of Substrate Discrimination by a Noncanonical PDZ Tandem in the Intramembrane-Cleaving Protease RseP Structure, 22, 2013
|
|
8IPC
| |
7W6Y
| Crystal structure of Kangiella koreensis RseP orthologue in complex with batimastat in space group P1 | 分子名称: | 4-(N-HYDROXYAMINO)-2R-ISOBUTYL-2S-(2-THIENYLTHIOMETHYL)SUCCINYL-L-PHENYLALANINE-N-METHYLAMIDE, Anti sigma-E protein, RseA, ... | 著者 | Imaizumi, Y, Takanuki, K, Nogi, T. | 登録日 | 2021-12-02 | 公開日 | 2022-09-07 | 実験手法 | X-RAY DIFFRACTION (3.1 Å) | 主引用文献 | Mechanistic insights into intramembrane proteolysis by E. coli site-2 protease homolog RseP. Sci Adv, 8, 2022
|
|
7W6X
| |
7W6Z
| |
7W70
| |
7W71
| |
7Y4Q
| Semaphorin 6D in complex with Plexin A1 | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Plexin-A1, ... | 著者 | Tanaka, T, Neyazaki, M, Nogi, T. | 登録日 | 2022-06-16 | 公開日 | 2022-10-19 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (4.7 Å) | 主引用文献 | Hybrid in vitro/in silico analysis of low-affinity protein-protein interactions that regulate signal transduction by Sema6D. Protein Sci., 31, 2022
|
|
7Y4P
| Human Plexin A1, extracellular domains 1-4 | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Plexin-A1 | 著者 | Tanaka, T, Neyazaki, M, Nogi, T. | 登録日 | 2022-06-15 | 公開日 | 2022-10-19 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (3.5 Å) | 主引用文献 | Hybrid in vitro/in silico analysis of low-affinity protein-protein interactions that regulate signal transduction by Sema6D. Protein Sci., 31, 2022
|
|
7Y4O
| Rat Semaphorin 6D extracellular region | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, Semaphorin 6D | 著者 | Tanaka, T, Neyazaki, M, Nogi, T. | 登録日 | 2022-06-15 | 公開日 | 2022-10-19 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (3 Å) | 主引用文献 | Hybrid in vitro/in silico analysis of low-affinity protein-protein interactions that regulate signal transduction by Sema6D. Protein Sci., 31, 2022
|
|
1O3Y
| Crystal structure of mouse ARF1 (delta17-Q71L), GTP form | 分子名称: | ADP-ribosylation factor 1, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION | 著者 | Shiba, T, Kawasaki, M, Takatsu, H, Nogi, T, Matsugaki, N, Igarashi, N, Suzuki, M, Kato, R, Nakayama, K, Wakatsuki, S. | 登録日 | 2003-05-08 | 公開日 | 2003-05-20 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (1.5 Å) | 主引用文献 | Molecular mechanism of membrane recruitment of GGA by ARF in lysosomal protein transport Nat.Struct.Biol., 10, 2003
|
|
1O3X
| Crystal structure of human GGA1 GAT domain | 分子名称: | ADP-ribosylation factor binding protein GGA1 | 著者 | Shiba, T, Kawasaki, M, Takatsu, H, Nogi, T, Matsugaki, N, Igarashi, N, Suzuki, M, Kato, R, Nakayama, K, Wakatsuki, S. | 登録日 | 2003-05-08 | 公開日 | 2003-05-20 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | 主引用文献 | Molecular Mechanism of Membrane Recruitment of Gga by Arf in Lysosomal Protein Transport Nat.Struct.Biol., 10, 2003
|
|
1IUA
| Ultra-high resolution structure of HiPIP from Thermochromatium tepidum | 分子名称: | High-potential iron-sulfur protein, IRON/SULFUR CLUSTER, SULFATE ION | 著者 | Liu, L, Nogi, T, Kobayashi, M, Nozawa, T, Miki, K. | 登録日 | 2002-03-01 | 公開日 | 2002-03-20 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (0.8 Å) | 主引用文献 | Ultrahigh-resolution structure of high-potential iron-sulfur protein from Thermochromatium tepidum. Acta Crystallogr.,Sect.D, 58, 2002
|
|
7CQD
| The NZ-1 Fab complexed with the PDZ tandem fragment of A. aeolicus S2P homolog with the PA14 tag inserted between the residues 235 and 236 | 分子名称: | Heavy chain of antigen binding fragment, Fab of NZ-1, Light chain of antigen binding fragment, ... | 著者 | Tamura-Sakaguchi, R, Aruga, R, Nogi, T. | 登録日 | 2020-08-10 | 公開日 | 2021-05-19 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (3.2 Å) | 主引用文献 | Moving toward generalizable NZ-1 labeling for 3D structure determination with optimized epitope-tag insertion. Acta Crystallogr D Struct Biol, 77, 2021
|
|
7CQC
| The NZ-1 Fab complexed with the PDZ tandem fragment of A. aeolicus S2P homolog with the PA14 tag inserted between the residues 181 and 184 | 分子名称: | Heavy chain of antigen binding fragment, Fab of NZ-1, Light chain of antigen binding fragment, ... | 著者 | Aruga, R, Tamura-Sakaguchi, R, Nogi, T. | 登録日 | 2020-08-10 | 公開日 | 2021-05-19 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | 主引用文献 | Moving toward generalizable NZ-1 labeling for 3D structure determination with optimized epitope-tag insertion. Acta Crystallogr D Struct Biol, 77, 2021
|
|