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17RA
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BU of 17ra by Molmil
BRANCHPOINT HELIX FROM YEAST AND BINDING SITE FOR PHAGE GA/MS2 COAT PROTEINS, NMR, 12 STRUCTURES
分子名称: RNA
著者Nikonowicz, E.P, Smith, J.S.
登録日1998-08-04
公開日1999-04-20
最終更新日2022-02-16
実験手法SOLUTION NMR
主引用文献NMR structure and dynamics of an RNA motif common to the spliceosome branch-point helix and the RNA-binding site for phage GA coat protein.
Biochemistry, 37, 1998
6VZC
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BU of 6vzc by Molmil
Tandem UU:GA mismatch within an RNA helix
分子名称: RNA 28-mer
著者Nikonowicz, E.P, Chang, A.T.
登録日2020-02-28
公開日2020-09-02
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献2-Amino-1,3-benzothiazole-6-carboxamide Preferentially Binds the Tandem Mismatch Motif r(UY:GA).
Biochemistry, 59, 2020
2LV0
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BU of 2lv0 by Molmil
Solution Structure of Helix-35 Stem-loop from E. coli 23S rRNA
分子名称: RNA (5'-R(*GP*GP*GP*CP*UP*AP*AP*UP*GP*UP*UP*GP*AP*AP*AP*AP*AP*UP*UP*AP*GP*CP*CP*C)-3')
著者Nikonowicz, E.P, Wang, J, Moran, S, Donarski, J.
登録日2012-06-26
公開日2013-06-26
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Solution Structure of Helix-35 Stem-loop from E. coli 23S rRNA
To be Published
5UF3
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BU of 5uf3 by Molmil
Structure Effects of the Four-Adenine Loop of the Coliphage GA Replicase RNA Operator
分子名称: phage GA operator RNA hairpin
著者Chang, A.T, Tran, M, DeJong, E, Nikonowicz, E.P.
登録日2017-01-03
公開日2017-05-31
最終更新日2017-07-26
実験手法SOLUTION NMR
主引用文献Structure and Dynamics of the Tetra-A Loop and (A-A)-U Sequence Motif within the Coliphage GA Replicase RNA Operator.
Biochemistry, 56, 2017
4PDB
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BU of 4pdb by Molmil
CRYSTAL STRUCTURE OF BACILLUS ANTHRACIS RIBOSOMAL PROTEIN S8 IN COMPLEX WITH AN RNA APTAMER
分子名称: 30S ribosomal protein S8, SELEX RNA aptamer
著者Davlieva, M, Shamoo, Y, Nikonowicz, E.P.
登録日2014-04-17
公開日2014-09-03
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structure analysis of free and bound states of an RNA aptamer against ribosomal protein S8 from Bacillus anthracis.
Nucleic Acids Res., 42, 2014
1BGZ
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BU of 1bgz by Molmil
S8 RRNA BINDING SITE FROM E. COLI, NMR, 6 STRUCTURES
分子名称: RNA
著者Kalurachchi, K, Nikonowicz, E.P.
登録日1998-06-03
公開日1999-01-13
最終更新日2022-02-16
実験手法SOLUTION NMR
主引用文献NMR structure determination of the binding site for ribosomal protein S8 from Escherichia coli 16 S rRNA.
J.Mol.Biol., 280, 1998
2AWQ
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BU of 2awq by Molmil
Solution Structure of pseudouridine-32 modified anticodon stem-loop of E. coli tRNAPhe
分子名称: 5'-R(*GP*GP*GP*GP*AP*(PSU)P*UP*GP*AP*AP*AP*AP*UP*CP*CP*CP*C)-3'
著者Cabello-Villegas, J, Nikonowicz, E.P.
登録日2005-09-01
公開日2006-01-17
最終更新日2022-03-09
実験手法SOLUTION NMR
主引用文献Solution structure of psi32-modified anticodon stem-loop of Escherichia coli tRNAPhe.
Nucleic Acids Res., 33, 2005
1D0T
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BU of 1d0t by Molmil
SOLUTION STRUCTURE OF A PHOSPHOROTHIOATE MODIFIED RNA BINDING SITE FOR PHAGE MS2 COAT PROTEIN
分子名称: PHOSPHOROTHIOATE SUBSTITUTED PHAGE MS2 RNA BINDING SITE
著者Smith, J.S, Nikonowicz, E.P.
登録日1999-09-14
公開日2000-05-24
最終更新日2022-02-16
実験手法SOLUTION NMR
主引用文献Phosphorothioate substitution can substantially alter RNA conformation.
Biochemistry, 39, 2000
1D0U
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BU of 1d0u by Molmil
SOLUTION STRUCTURE OF AN RNA BINDING SITE FOR PHAGE MS2 COAT PROTEIN
分子名称: PHAGE MS2 RNA BINDING SITE
著者Smith, J.S, Nikonowicz, E.P.
登録日1999-09-14
公開日2000-05-24
最終更新日2022-02-16
実験手法SOLUTION NMR
主引用文献Phosphorothioate substitution can substantially alter RNA conformation.
Biochemistry, 39, 2000
2LBK
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BU of 2lbk by Molmil
Glycyl-tRNA(UCC)1B anticodon stem-loop from Staphylococcus epidermidis
分子名称: RNA (5'-R(*GP*GP*GP*AP*CP*CP*UP*UP*CP*CP*CP*GP*GP*UP*CP*UP*C)-3')
著者Chang, A.T, Nikonowicz, E.P.
登録日2011-03-31
公開日2012-04-04
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Solution Nuclear Magnetic Resonance Analyses of the Anticodon Arms of Proteinogenic and Nonproteinogenic tRNA(Gly).
Biochemistry, 51, 2012
2LBR
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BU of 2lbr by Molmil
Conformation Effects of Base Modification on the Anticodon Stem-loop of Bacillus subtilis tRNATYR
分子名称: RNA (5'-R(*GP*GP*GP*GP*AP*CP*UP*GP*UP*AP*(6IA)P*AP*(PSU)P*CP*CP*CP*C)-3')
著者Denmon, A.P, Wang, J, Nikonowicz, E.P.
登録日2011-04-05
公開日2011-08-03
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Conformation Effects of Base Modification on the Anticodon Stem-Loop of Bacillus subtilis tRNA(Tyr).
J.Mol.Biol., 412, 2011
2LAC
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BU of 2lac by Molmil
NMR structure of unmodified_ASL_Tyr
分子名称: RNA (5'-R(*GP*GP*GP*GP*AP*CP*UP*GP*UP*AP*AP*AP*UP*CP*CP*CP*C)-3')
著者Denmon, A.P, Wang, J, Nikonowicz, E.P.
登録日2011-03-10
公開日2011-08-03
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Conformation Effects of Base Modification on the Anticodon Stem-Loop of Bacillus subtilis tRNA(Tyr).
J.Mol.Biol., 412, 2011
2LBJ
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BU of 2lbj by Molmil
Glycyl-tRNA(GCC) anticodon stem-loop from Bacillus subtilis
分子名称: RNA (5'-R(*GP*GP*GP*CP*CP*UP*UP*GP*CP*CP*AP*AP*GP*GP*UP*CP*C)-3')
著者Chang, A.T, Nikonowicz, E.P.
登録日2011-03-31
公開日2012-04-04
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Solution Nuclear Magnetic Resonance Analyses of the Anticodon Arms of Proteinogenic and Nonproteinogenic tRNA(Gly).
Biochemistry, 51, 2012
1J4Y
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BU of 1j4y by Molmil
Solution Structure of the Unmodified Anticodon Stem-loop from E. coli tRNA(Phe)
分子名称: anticodon stem-loop of tRNA(Phe)
著者Cabello-Villegas, J, Winkler, M.E, Nikonowicz, E.P.
登録日2001-12-12
公開日2002-07-17
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Solution conformations of unmodified and A(37)N(6)-dimethylallyl modified anticodon stem-loops of Escherichia coli tRNA(Phe).
J.Mol.Biol., 319, 2002
1JU7
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BU of 1ju7 by Molmil
NMR Solution Structure of the RNA Hairpin Binding Site for the Histone Stem-loop Binding Protein
分子名称: 5'-R(*GP*GP*CP*CP*AP*AP*AP*GP*GP*CP*CP*CP*UP*UP*UP*UP*CP*AP*GP*GP*GP*CP*CP*AP*CP*CP*CP*A)-3'
著者DeJong, E.S, Marzluff, W.F, Nikonowicz, E.P.
登録日2001-08-23
公開日2002-03-20
最終更新日2022-02-23
実験手法SOLUTION NMR
主引用文献NMR structure and dynamics of the RNA-binding site for the histone mRNA stem-loop binding protein.
RNA, 8, 2002
1JWC
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BU of 1jwc by Molmil
NMR SOLUTION STRUCTURE OF THE RNA HAIRPIN BINDING SITE FOR THE HISTONE STEM-LOOP BINDING PROTEIN
分子名称: 5'-R(*GP*GP*CP*CP*AP*AP*AP*GP*GP*CP*CP*CP*UP*UP*UP*UP*CP*AP*GP*GP*GP*CP*CP*AP*CP*CP*CP*A)-3'
著者Dejong, E.S, Marzluff, W.F, Nikonowicz, E.P.
登録日2001-09-03
公開日2002-03-20
最終更新日2022-02-23
実験手法SOLUTION NMR
主引用文献NMR structure and dynamics of the RNA-binding site for the histone mRNA stem-loop binding protein.
RNA, 8, 2002
1KKA
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BU of 1kka by Molmil
Solution Structure of the Unmodified Anticodon Stem-loop from E. coli tRNA(Phe)
分子名称: anticodon stem-loop of tRNA(PHE)
著者Cabello-Villegas, J, Winkler, M.E, Nikonowicz, E.P.
登録日2001-12-06
公開日2002-07-17
最終更新日2022-02-23
実験手法SOLUTION NMR
主引用文献Solution conformations of unmodified and A(37)N(6)-dimethylallyl modified anticodon stem-loops of Escherichia coli tRNA(Phe).
J.Mol.Biol., 319, 2002
2LA9
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BU of 2la9 by Molmil
NMR structure of Pseudouridine_ASL_Tyr
分子名称: RNA (5'-R(*GP*GP*GP*GP*AP*CP*UP*GP*UP*AP*AP*AP*(PSU)P*CP*CP*CP*C)-3')
著者Denmon, A.P, Wang, J, Nikonowicz, E.P.
登録日2011-03-09
公開日2011-08-03
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Conformation Effects of Base Modification on the Anticodon Stem-Loop of Bacillus subtilis tRNA(Tyr).
J.Mol.Biol., 412, 2011
2LBL
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BU of 2lbl by Molmil
Unmodified Glycyl-tRNA(UCC) anticodon stem-loop from Bacillus subtilis
分子名称: RNA (5'-R(*GP*GP*GP*AP*CP*CP*UP*UP*CP*CP*AP*AP*GP*UP*CP*UP*C)-3')
著者Chang, A.T, Nikonowicz, E.P.
登録日2011-03-31
公開日2012-04-04
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Solution Nuclear Magnetic Resonance Analyses of the Anticodon Arms of Proteinogenic and Nonproteinogenic tRNA(Gly).
Biochemistry, 51, 2012
2LBQ
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BU of 2lbq by Molmil
NMR structure of i6A37_tyrASL
分子名称: RNA (5'-R(*GP*GP*GP*GP*AP*CP*UP*GP*UP*AP*(6IA)P*AP*UP*CP*CP*CP*C)-3')
著者Denmon, A.P, Wang, J, Nikonowicz, E.P.
登録日2011-04-05
公開日2011-08-03
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Conformation Effects of Base Modification on the Anticodon Stem-Loop of Bacillus subtilis tRNA(Tyr).
J.Mol.Biol., 412, 2011
2LUN
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BU of 2lun by Molmil
RNA Aptamer for B. anthracis Ribosomal Protein S8
分子名称: RNA (28-MER)
著者Nikonowicz, E.P, Wang, J.
登録日2012-06-18
公開日2013-12-18
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Structure and function of TatD exonuclease in DNA repair.
Nucleic Acids Res., 42, 2014
2GBH
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BU of 2gbh by Molmil
NMR structure of stem region of helix-35 of 23S E.coli ribosomal RNA (residues 736-760)
分子名称: 5'-R(*(GMP)P*GP*GP*CP*UP*AP*AP*UP*GP*(PSU)P*UP*GP*AP*AP*AP*AP*AP*UP*UP*AP*GP*CP*CP*C)-3'
著者Bax, A, Boisbouvier, J, Bryce, D, Grishaev, A, Jaroniec, C, Miclet, E, Nikonovicz, E, O'Neil-Cabello, E, Ying, J.
登録日2006-03-10
公開日2006-04-11
最終更新日2022-03-09
実験手法SOLUTION NMR
主引用文献Measurement of five dipolar couplings from a single 3D NMR multiplet applied to the study of RNA dynamics.
J.Am.Chem.Soc., 126, 2004
2KHY
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BU of 2khy by Molmil
Specifier Domain of B. subtilis tyrS T box leader RNA
分子名称: RNA (38-MER)
著者Wang, J, Henkin, T.M.
登録日2009-04-14
公開日2010-02-16
最終更新日2022-03-16
実験手法SOLUTION NMR
主引用文献NMR structure and dynamics of the Specifier Loop domain from the Bacillus subtilis tyrS T box leader RNA.
Nucleic Acids Res., 38, 2010
1I6U
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BU of 1i6u by Molmil
RNA-PROTEIN INTERACTIONS: THE CRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN S8/RRNA COMPLEX FROM METHANOCOCCUS JANNASCHII
分子名称: 16S RRNA FRAGMENT, 30S RIBOSOMAL PROTEIN S8P, SULFATE ION
著者Tishchenko, S, Nikulin, A, Fomenkova, N, Nevskaya, N, Nikonov, O, Dumas, P, Moine, H, Ehresmann, B, Ehresmann, C, Piendl, W, Lamzin, V, Garber, M, Nikonov, S.
登録日2001-03-05
公開日2001-08-03
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Detailed analysis of RNA-protein interactions within the ribosomal protein S8-rRNA complex from the archaeon Methanococcus jannaschii.
J.Mol.Biol., 311, 2001

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