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6KRP
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BU of 6krp by Molmil
Peroxiredoxin from Aeropyrum pernix K1 (ApPrx) 0Cys W88A mutant
Descriptor: CITRIC ACID, Peroxiredoxin
Authors:Himiyama, T, Nakamura, T.
Deposit date:2019-08-22
Release date:2020-07-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Disassembly of the ring-type decameric structure of peroxiredoxin from Aeropyrum pernix K1 by amino acid mutation.
Protein Sci., 29, 2020
6KRK
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BU of 6krk by Molmil
Peroxiredoxin from Aeropyrum pernix K1 (ApPrx) 0Cys mutant
Descriptor: CITRIC ACID, Peroxiredoxin
Authors:Himiyama, T, Nakamura, T.
Deposit date:2019-08-22
Release date:2020-07-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Disassembly of the ring-type decameric structure of peroxiredoxin from Aeropyrum pernix K1 by amino acid mutation.
Protein Sci., 29, 2020
6KRR
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BU of 6krr by Molmil
Peroxiredoxin from Aeropyrum pernix K1 (ApPrx) 0Cys W210A mutant
Descriptor: Peroxiredoxin
Authors:Himiyama, T, Nakamura, T.
Deposit date:2019-08-22
Release date:2020-07-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Disassembly of the ring-type decameric structure of peroxiredoxin from Aeropyrum pernix K1 by amino acid mutation.
Protein Sci., 29, 2020
6KRM
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BU of 6krm by Molmil
Peroxiredoxin from Aeropyrum pernix K1 (ApPrx) 0Cys F46A mutant
Descriptor: CITRIC ACID, Peroxiredoxin
Authors:Himiyama, T, Nakamura, T.
Deposit date:2019-08-22
Release date:2020-07-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Disassembly of the ring-type decameric structure of peroxiredoxin from Aeropyrum pernix K1 by amino acid mutation.
Protein Sci., 29, 2020
6KRS
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BU of 6krs by Molmil
Peroxiredoxin from Aeropyrum pernix K1 (ApPrx) 0Cys W211A mutant
Descriptor: CITRIC ACID, Peroxiredoxin
Authors:Himiyama, T, Nakamura, T.
Deposit date:2019-08-22
Release date:2020-07-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Disassembly of the ring-type decameric structure of peroxiredoxin from Aeropyrum pernix K1 by amino acid mutation.
Protein Sci., 29, 2020
2D6K
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BU of 2d6k by Molmil
Crystal structure of mouse galectin-9 N-terminal CRD (crystal form 1)
Descriptor: lectin, galactose binding, soluble 9
Authors:Nagae, M, Nishi, N, Nakamura, T, Murata, T, Wakatsuki, S, Kato, R.
Deposit date:2005-11-14
Release date:2006-09-26
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of the Galectin-9 N-terminal Carbohydrate Recognition Domain from Mus musculus Reveals the Basic Mechanism of Carbohydrate Recognition
J.Biol.Chem., 281, 2006
2D5R
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BU of 2d5r by Molmil
Crystal Structure of a Tob-hCaf1 Complex
Descriptor: CCR4-NOT transcription complex subunit 7, Tob1 protein
Authors:Horiuchi, M, Suzuki, N.N, Muroya, N, Takahasi, K, Nishida, M, Yoshida, Y, Ikematsu, N, Nakamura, T, Kawamura-Tsuzuku, J, Yamamoto, T, Inagaki, F.
Deposit date:2005-11-04
Release date:2006-12-12
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis for the antiproliferative activity of the Tob-hCaf1 complex.
J.Biol.Chem., 284, 2009
2D6N
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BU of 2d6n by Molmil
Crystal structure of mouse galectin-9 N-terminal CRD in complex with N-acetyllactosamine
Descriptor: beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, lectin, galactose binding, ...
Authors:Nagae, M, Nishi, N, Nakamura, T, Murata, T, Wakatsuki, S, Kato, R.
Deposit date:2005-11-14
Release date:2006-09-26
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of the Galectin-9 N-terminal Carbohydrate Recognition Domain from Mus musculus Reveals the Basic Mechanism of Carbohydrate Recognition
J.Biol.Chem., 281, 2006
2D6P
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BU of 2d6p by Molmil
Crystal structure of mouse galectin-9 N-terminal CRD in complex with T-antigen
Descriptor: beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose, lectin, galactose binding, ...
Authors:Nagae, M, Nishi, N, Nakamura, T, Murata, T, Wakatsuki, S, Kato, R.
Deposit date:2005-11-14
Release date:2006-09-26
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal Structure of the Galectin-9 N-terminal Carbohydrate Recognition Domain from Mus musculus Reveals the Basic Mechanism of Carbohydrate Recognition
J.Biol.Chem., 281, 2006
2D6O
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BU of 2d6o by Molmil
Crystal structure of mouse galectin-9 N-terminal CRD in complex with N-acetyllactosamine dimer
Descriptor: GLYCEROL, beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, lectin, ...
Authors:Nagae, M, Nishi, N, Nakamura, T, Murata, T, Wakatsuki, S, Kato, R.
Deposit date:2005-11-14
Release date:2006-09-26
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Crystal Structure of the Galectin-9 N-terminal Carbohydrate Recognition Domain from Mus musculus Reveals the Basic Mechanism of Carbohydrate Recognition
J.Biol.Chem., 281, 2006
3WE7
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BU of 3we7 by Molmil
Crystal Structure of Diacetylchitobiose Deacetylase from Pyrococcus horikoshii
Descriptor: ACETIC ACID, GLYCEROL, HEXANE-1,6-DIOL, ...
Authors:Mine, S, Nakamura, T, Fukuda, Y, Inoue, T, Uegaki, K, Sato, T.
Deposit date:2013-07-01
Release date:2014-05-07
Last modified:2014-08-20
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Expression from engineered Escherichia coli chromosome and crystallographic study of archaeal N,N'-diacetylchitobiose deacetylase
Febs J., 281, 2014
2D6L
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BU of 2d6l by Molmil
Crystal structure of mouse galectin-9 N-terminal CRD (crystal form 2)
Descriptor: lectin, galactose binding, soluble 9
Authors:Nagae, M, Nishi, N, Nakamura, T, Wakatsuki, S, Kato, R.
Deposit date:2005-11-14
Release date:2006-09-26
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of the Galectin-9 N-terminal Carbohydrate Recognition Domain from Mus musculus Reveals the Basic Mechanism of Carbohydrate Recognition
J.Biol.Chem., 281, 2006
2D6M
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BU of 2d6m by Molmil
Crystal structure of mouse galectin-9 N-terminal CRD in complex with lactose
Descriptor: beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose, lectin, galactose binding, ...
Authors:Nagae, M, Nishi, N, Nakamura, T, Wakatsuki, S, Kato, R.
Deposit date:2005-11-14
Release date:2006-09-26
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structure of the Galectin-9 N-terminal Carbohydrate Recognition Domain from Mus musculus Reveals the Basic Mechanism of Carbohydrate Recognition
J.Biol.Chem., 281, 2006
6M5Y
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BU of 6m5y by Molmil
Structure of human galectin-1 tandem-repeat mutant with lactose
Descriptor: Galectin-1,Galectin-1, beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose, beta-D-galactopyranose-(1-4)-beta-D-glucopyranose
Authors:Nonaka, Y, Kamitori, S, Nakamura, T.
Deposit date:2020-03-12
Release date:2021-03-17
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:Crystal structure and conformational stability of a galectin-1 tandem-repeat mutant with a short linker.
Glycobiology, 2021
2DFV
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BU of 2dfv by Molmil
Hyperthermophilic threonine dehydrogenase from Pyrococcus horikoshii
Descriptor: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Probable L-threonine 3-dehydrogenase, SULFATE ION, ...
Authors:Ishikawa, K, Higashi, N, Nakamura, T, Matsuura, T, Nakagawa, A.
Deposit date:2006-03-03
Release date:2007-01-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:The first crystal structure of L-threonine dehydrogenase.
J.Mol.Biol., 366, 2007
3VP8
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BU of 3vp8 by Molmil
Crystal structure of the N-terminal domain of the yeast general corepressor Tup1p
Descriptor: General transcriptional corepressor TUP1
Authors:Matsumura, H, Kusaka, N, Nakamura, T, Tanaka, N, Sagegami, K, Uegaki, K, Inoue, T, Mukai, Y.
Deposit date:2012-02-28
Release date:2012-06-13
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:Crystal structure of the N-terminal domain of the yeast general corepressor Tup1p and its functional implications
J.Biol.Chem., 287, 2012
3VP9
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BU of 3vp9 by Molmil
Crystal structure of the N-terminal domain of the yeast general corepressor Tup1p mutant
Descriptor: 1,4-DIETHYLENE DIOXIDE, General transcriptional corepressor TUP1
Authors:Matsumura, H, Kusaka, N, Nakamura, T, Tanaka, N, Sagegami, K, Uegaki, K, Inoue, T, Mukai, Y.
Deposit date:2012-02-28
Release date:2012-06-13
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.799 Å)
Cite:Crystal structure of the N-terminal domain of the yeast general corepressor Tup1p and its functional implications
J.Biol.Chem., 287, 2012
5XQY
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BU of 5xqy by Molmil
Structure of monomeric mutant of REI immunoglobulin light chain variable domain crystallized at pH 8
Descriptor: Immunoglobulin kappa variable 1D-33
Authors:Mine, S, Nakamura, T, Uegaki, K, Hamada, D.
Deposit date:2017-06-07
Release date:2017-08-02
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Heat-induced native dimerization prevents amyloid formation by variable domain from immunoglobulin light-chain REI
FEBS J., 284, 2017
5XP1
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BU of 5xp1 by Molmil
Structure of monomeric mutant of REI immunoglobulin light chain variable domain crystallized at pH 6
Descriptor: Immunoglobulin kappa variable 1D-33
Authors:Mine, S, Nakamura, T, Uegaki, K, Hamada, D.
Deposit date:2017-05-31
Release date:2017-08-02
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.88 Å)
Cite:Heat-induced native dimerization prevents amyloid formation by variable domain from immunoglobulin light-chain REI
FEBS J., 284, 2017
3WUC
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BU of 3wuc by Molmil
X-ray crystal structure of Xenopus laevis galectin-Va
Descriptor: Galectin, MALONIC ACID, beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose
Authors:Nonaka, Y, Yoshida, H, Kamitori, S, Nakamura, T.
Deposit date:2014-04-23
Release date:2015-04-08
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of a Xenopus laevis skin proto-type galectin, close to but distinct from galectin-1.
Glycobiology, 25, 2015
3WUD
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BU of 3wud by Molmil
X-ray crystal structure of Xenopus laevis galectin-Ib
Descriptor: Galectin, SULFATE ION, beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose
Authors:Nonaka, Y, Yoshida, H, Kamitori, S, Nakamura, T.
Deposit date:2014-04-23
Release date:2015-04-08
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Crystal structure of a Xenopus laevis skin proto-type galectin, close to but distinct from galectin-1.
Glycobiology, 25, 2015
3ALQ
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BU of 3alq by Molmil
Crystal structure of TNF-TNFR2 complex
Descriptor: COBALT (II) ION, Tumor necrosis factor, Tumor necrosis factor receptor superfamily member 1B
Authors:Mukai, Y, Nakamura, T, Yamagata, Y, Tsutsumi, Y.
Deposit date:2010-08-06
Release date:2010-11-17
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3 Å)
Cite:Solution of the Structure of the TNF-TNFR2 Complex
Sci.Signal., 3, 2010
7FBW
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BU of 7fbw by Molmil
Acetylxylan esterase from Caldanaerobacter subterraneus subsp. tengcongensis
Descriptor: NICKEL (II) ION, Predicted xylanase/chitin deacetylase
Authors:Sasamoto, K, Himiyama, T, Moriyoshi, K, Ohmoto, T, Uegaki, K, Nishiya, Y, Nakamura, T.
Deposit date:2021-07-13
Release date:2021-10-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of acetylxylan esterase from Caldanaerobacter subterraneus subsp. tengcongensis.
Acta Crystallogr.,Sect.F, 77, 2021
7F8D
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BU of 7f8d by Molmil
Malate Dehydrogenase from Geobacillus stearothermophilus (gs-MDH) G218Y mutant
Descriptor: Malate dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Shimozawa, Y, Himiyama, T, Nakamura, T, Nishiya, Y.
Deposit date:2021-07-02
Release date:2022-02-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Increasing loop flexibility affords low-temperature adaptation of a moderate thermophilic malate dehydrogenase from Geobacillus stearothermophilus.
Protein Eng.Des.Sel., 34, 2021
5ZSS
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BU of 5zss by Molmil
L-Cysteine-PLP reaction intermediate of NifS from Hydrogenimonas thermophila
Descriptor: Cysteine desulfurase, N-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)-L-CYSTEINE
Authors:Nakamura, T, Fujishiro, T, Takahashi, Y.
Deposit date:2018-04-29
Release date:2019-05-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.17 Å)
Cite:X-ray snapshots of two classes of cysteine desulfurase enzymes NifS and SufS
to be published

218853

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