4H4L
| Crystal Structure of ternary complex of HutP(HutP-L-His-Zn) | Descriptor: | HISTIDINE, Hut operon positive regulatory protein, ZINC ION | Authors: | Dhakshnamoorthy, B, Misono, T.S, Mizuno, H, Kumar, P.K.R. | Deposit date: | 2012-09-17 | Release date: | 2013-09-04 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Alternative binding modes of l-histidine guided by metal ions for the activation of the antiterminator protein HutP of Bacillus subtilis. J.Struct.Biol., 183, 2013
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2ZFA
| Structure of Lactate Oxidase at pH4.5 from AEROCOCCUS VIRIDANS | Descriptor: | 1,2-ETHANEDIOL, FLAVIN MONONUCLEOTIDE, Lactate oxidase | Authors: | Furuichi, M, Balasundaresan, D, Suzuki, N, Yoshida, Y, Minagawa, H, Kaneko, H, Waga, I, Kumar, P.K.R, Mizuno, H. | Deposit date: | 2007-12-26 | Release date: | 2008-04-22 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.81 Å) | Cite: | X-ray structures of Aerococcus viridans lactate oxidase and its complex with D-lactate at pH 4.5 show an alpha-hydroxyacid oxidation mechanism J.Mol.Biol., 378, 2008
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1J2L
| Crystal structure of the disintegrin, trimestatin | Descriptor: | Disintegrin triflavin, SULFATE ION | Authors: | Fujii, Y, Okuda, D, Fujimoto, Z, Morita, T, Mizuno, H. | Deposit date: | 2003-01-06 | Release date: | 2003-10-07 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Crystal Structure of Trimestatin, a Disintegrin Containing a Cell Adhesion Recognition Motif RGD J.Mol.Biol., 332, 2003
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1UA7
| Crystal Structure Analysis of Alpha-Amylase from Bacillus Subtilis complexed with Acarbose | Descriptor: | 4,6-dideoxy-alpha-D-xylo-hexopyranose-(1-4)-alpha-D-glucopyranose, 6-AMINO-4-HYDROXYMETHYL-CYCLOHEX-4-ENE-1,2,3-TRIOL, Alpha-amylase, ... | Authors: | Kagawa, M, Fujimoto, Z, Momma, M, Takase, K, Mizuno, H. | Deposit date: | 2003-03-03 | Release date: | 2004-05-18 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2.21 Å) | Cite: | Crystal structure of Bacillus subtilis alpha-amylase in complex with acarbose J.BACTERIOL., 185, 2003
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2DD7
| A GFP-like protein from marine copepod, Chiridius poppei | Descriptor: | 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID, CHLORIDE ION, green fluorescent protein | Authors: | Suto, K, Masuda, H, Takenaka, Y, Mizuno, H. | Deposit date: | 2006-01-23 | Release date: | 2007-01-23 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Structural basis for red-shifted emission of a GFP-like protein from the marine copepod Chiridius poppei Genes Cells, 14, 2009
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2DD9
| A mutant of GFP-like protein from Chiridius poppei | Descriptor: | 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID, CHLORIDE ION, green fluorescent protein | Authors: | Suto, K, Masuda, H, Takenaka, Y, Mizuno, H. | Deposit date: | 2006-01-24 | Release date: | 2007-01-23 | Last modified: | 2021-11-10 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Structural basis for red-shifted emission of a GFP-like protein from the marine copepod Chiridius poppei Genes Cells, 14, 2009
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2E1M
| Crystal Structure of L-Glutamate Oxidase from Streptomyces sp. X-119-6 | Descriptor: | FLAVIN-ADENINE DINUCLEOTIDE, L-glutamate oxidase, PHOSPHATE ION | Authors: | Sasaki, C, Kashima, A, Sakaguchi, C, Mizuno, H, Arima, J, Kusakabe, H, Tamura, T, Sugio, S, Inagaki, K. | Deposit date: | 2006-10-26 | Release date: | 2007-11-13 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.8 Å) | Cite: | Structural characterization of l-glutamate oxidase from Streptomyces sp. X-119-6 Febs J., 276, 2009
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1WRQ
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1WRO
| Metal Ion dependency of the antiterminator protein, HutP, for binding to the terminator region of hut mRNA- A structural basis | Descriptor: | BARIUM ION, HISTIDINE, Hut operon positive regulatory protein | Authors: | Kumarevel, T, Mizuno, H, Kumar, P.K.R. | Deposit date: | 2004-10-25 | Release date: | 2005-08-30 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.35 Å) | Cite: | Characterization of the metal ion binding site in the anti-terminator protein, HutP, of Bacillus subtilis Nucleic Acids Res., 33, 2005
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1WRN
| Metal Ion dependency of the antiterminator protein, HutP, for binding to the terminator region of hut mRNA- A structural basis | Descriptor: | DI(HYDROXYETHYL)ETHER, HISTIDINE, Hut operon positive regulatory protein, ... | Authors: | Kumarevel, T, Mizuno, H, Kumar, P.K.R. | Deposit date: | 2004-10-25 | Release date: | 2005-08-30 | Last modified: | 2021-11-10 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Characterization of the metal ion binding site in the anti-terminator protein, HutP, of Bacillus subtilis Nucleic Acids Res., 33, 2005
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1UAS
| Crystal structure of rice alpha-galactosidase | Descriptor: | GLYCEROL, PLATINUM (II) ION, SULFATE ION, ... | Authors: | Fujimoto, Z, Kaneko, S, Momma, M, Kobayashi, H, Mizuno, H. | Deposit date: | 2003-03-18 | Release date: | 2003-07-01 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | Crystal structure of rice alpha-galactosidase complexed with D-galactose J.Biol.Chem., 278, 2003
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7X2B
| Red fluorescent protein from Diadumene lineata | Descriptor: | Red fluorescent protein, SULFATE ION | Authors: | Makabe, K, Hotta, J, Mizuno, H. | Deposit date: | 2022-02-25 | Release date: | 2023-03-01 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (1.63 Å) | Cite: | Cloning and structural basis of fluorescent protein color variants from identical species of sea anemone, Diadumene lineata. Photochem Photobiol Sci, 22, 2023
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1UF2
| The Atomic Structure of Rice dwarf Virus (RDV) | Descriptor: | Core protein P3, Outer capsid protein P8, Structural protein P7 | Authors: | Nakagawa, A, Miyazaki, N, Taka, J, Naitow, H, Ogawa, A, Fujimoto, Z, Mizuno, H, Higashi, T, Watanabe, Y, Omura, T, Cheng, R.H, Tsukihara, T. | Deposit date: | 2003-05-23 | Release date: | 2003-10-14 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (3.5 Å) | Cite: | The atomic structure of rice dwarf virus reveals the self-assembly mechanism of component proteins. Structure, 11, 2003
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1VCK
| Crystal structure of ferredoxin component of carbazole 1,9a-dioxygenase of Pseudomonas resinovorans strain CA10 | Descriptor: | FE (III) ION, FE2/S2 (INORGANIC) CLUSTER, HYDROSULFURIC ACID, ... | Authors: | Nam, J.-W, Noguchi, H, Fujiomoto, Z, Mizuno, H, Fushinobu, S, Kobashi, N, Iwata, K, Yoshida, T, Habe, H, Yamane, H, Omori, T, Nojiri, H. | Deposit date: | 2004-03-09 | Release date: | 2005-03-01 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Crystal structure of the ferredoxin component of carbazole 1,9a-dioxygenase of Pseudomonas resinovorans strain CA10, a novel Rieske non-heme iron oxygenase system PROTEINS, 58, 2005
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1WPT
| Crystal Structure of HutP, an RNA binding anti-termination protein | Descriptor: | Hut operon positive regulatory protein | Authors: | Kumarevel, T, Mizuno, H, Kumar, P.K.R. | Deposit date: | 2004-09-13 | Release date: | 2005-08-30 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.7 Å) | Cite: | Characterization of the metal ion binding site in the anti-terminator protein, HutP, of Bacillus subtilis Nucleic Acids Res., 33, 2005
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1WMQ
| Structure of the HutP antitermination complex bound to a single stranded region of hut mRNA | Descriptor: | 5'-R(P*UP*UP*UP*AP*GP*UP*U)-3', HISTIDINE, Hut operon positive regulatory protein, ... | Authors: | Kumarevel, T.S, Mizuno, H, Kumar, P.K.R. | Deposit date: | 2004-07-14 | Release date: | 2005-03-15 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Structural basis of HutP-mediated anti-termination and roles of the Mg2+ ion and L-histidine ligand. Nature, 434, 2005
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1WPU
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1WPV
| Crystal Structure of Activated Binary complex of HutP, an RNA binding anti-termination protein | Descriptor: | HISTIDINE, Hut operon positive regulatory protein, MAGNESIUM ION | Authors: | Kumarevel, T.S, Mizuno, H, Kumar, P.K.R. | Deposit date: | 2004-09-14 | Release date: | 2005-03-15 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Structural basis of HutP-mediated anti-termination and roles of the Mg2+ ion and L-histidine ligand. Nature, 434, 2005
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1WPS
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1XYF
| ENDO-1,4-BETA-XYLANASE FROM STREPTOMYCES OLIVACEOVIRIDIS | Descriptor: | ENDO-1,4-BETA-XYLANASE | Authors: | Fujimoto, Z, Mizuno, H, Kuno, A, Kusakabe, I. | Deposit date: | 1999-05-11 | Release date: | 2000-05-10 | Last modified: | 2023-08-23 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Crystal structure of Streptomyces olivaceoviridis E-86 beta-xylanase containing xylan-binding domain. J.Mol.Biol., 300, 2000
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1JWI
| Crystal Structure of Bitiscetin, a von Willeband Factor-dependent Platelet Aggregation Inducer. | Descriptor: | bitiscetin, platelet aggregation inducer | Authors: | Hirotsu, S, Mizuno, H, Fukuda, K, Qi, M.C, Matsui, T, Hamako, J, Morita, T, Titani, K. | Deposit date: | 2001-09-04 | Release date: | 2001-11-28 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Crystal structure of bitiscetin, a von Willebrand factor-dependent platelet aggregation inducer. Biochemistry, 40, 2001
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2AO5
| Crystal structure of an RNA duplex r(GGCGBrUGCGCU)2 with terminal and internal tandem G-U base pairs | Descriptor: | 5'-R(*GP*GP*CP*GP*(5BU)P*GP*CP*GP*CP*U)-3', MAGNESIUM ION | Authors: | Utsunomiya, R, Suto, K, Balasundaresan, D, Fukamizu, A, Kumar, P.K, Mizuno, H. | Deposit date: | 2005-08-12 | Release date: | 2006-03-28 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Structure of an RNA duplex r(GGCGBrUGCGCU)2 with terminal and internal tandem G.U base pairs. Acta Crystallogr.,Sect.D, 62, 2006
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1V6Y
| Crystal Structure Of chimeric Xylanase between Streptomyces Olivaceoviridis E-86 FXYN and Cellulomonas fimi Cex | Descriptor: | Beta-xylanase,Exoglucanase/xylanase | Authors: | Kaneko, S, Ichinose, H, Fujimoto, Z, Kuno, A, Yura, K, Go, M, Mizuno, H, Kusakabe, I, Kobayashi, H. | Deposit date: | 2003-12-04 | Release date: | 2004-09-07 | Last modified: | 2024-04-10 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Structure and function of a family 10 beta-xylanase chimera of Streptomyces olivaceoviridis E-86 FXYN and Cellulomonas fimi Cex J.Biol.Chem., 279, 2004
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2ZMU
| Crystal Structure of Monomeric Kusabira-Orange (MKO), Orange-Emitting GFP-like Protein, at pH 9.1 | Descriptor: | Fluorescent protein | Authors: | Kikuchi, A, Fukumura, E, Karasawa, S, Mizuno, H, Miyawaki, A, Shiro, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2008-04-21 | Release date: | 2008-10-21 | Last modified: | 2023-11-15 | Method: | X-RAY DIFFRACTION (1.65 Å) | Cite: | Structural Characterization of a Thiazoline-Containing Chromophore in an Orange Fluorescent Protein, Monomeric Kusabira Orange Biochemistry, 47, 2008
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2DDB
| Crystal structure of pseudecin from Pseudechis porphyriacus | Descriptor: | FORMIC ACID, GLYCEROL, Pseudecin, ... | Authors: | Suzuki, N, Yamazaki, Y, Fujimoto, Z, Morita, T, Mizuno, H. | Deposit date: | 2006-01-25 | Release date: | 2007-01-30 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Structures of pseudechetoxin and pseudecin, two snake-venom cysteine-rich secretory proteins that target cyclic nucleotide-gated ion channels: implications for movement of the C-terminal cysteine-rich domain Acta Crystallogr.,Sect.D, 64, 2008
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