1CRY
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1CO6
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1QNF
| STRUCTURE OF PHOTOLYASE | Descriptor: | 8-HYDROXY-10-(D-RIBO-2,3,4,5-TETRAHYDROXYPENTYL)-5-DEAZAISOALLOXAZINE, FLAVIN-ADENINE DINUCLEOTIDE, PHOTOLYASE | Authors: | Miki, K, Kitadokoro, K. | Deposit date: | 1997-07-04 | Release date: | 1998-01-14 | Last modified: | 2024-02-14 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Crystal structure of DNA photolyase from Anacystis nidulans Nat.Struct.Biol., 4, 1997
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1IO3
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2YQS
| Crystal structure of uridine-diphospho-N-acetylglucosamine pyrophosphorylase from Candida albicans, in the product-binding form | Descriptor: | GLYCEROL, MAGNESIUM ION, SULFATE ION, ... | Authors: | Miki, K, Maruyama, D, Nishitani, Y, Nonaka, T, Kita, A. | Deposit date: | 2007-03-30 | Release date: | 2007-05-22 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Crystal Structure of Uridine-diphospho-N-acetylglucosamine Pyrophosphorylase from Candida albicans and Catalytic Reaction Mechanism J.Biol.Chem., 282, 2007
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2YQJ
| Crystal Structure of uridine-diphospho-N-acetylglucosamine pyrophosphorylase from Candida albicans, in the reaction-completed form | Descriptor: | GLYCEROL, MAGNESIUM ION, SULFATE ION, ... | Authors: | Miki, K, Maruyama, D, Nishitani, Y, Nonaka, T, Kita, A. | Deposit date: | 2007-03-30 | Release date: | 2007-05-22 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.31 Å) | Cite: | Crystal Structure of Uridine-diphospho-N-acetylglucosamine Pyrophosphorylase from Candida albicans and Catalytic Reaction Mechanism J.Biol.Chem., 282, 2007
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2YQH
| Crystal structure of uridine-diphospho-N-acetylglucosamine pyrophosphorylase from Candida albicans, in the substrate-binding form | Descriptor: | 2-acetamido-2-deoxy-1-O-phosphono-alpha-D-glucopyranose, GLYCEROL, MAGNESIUM ION, ... | Authors: | Miki, K, Maruyama, D, Nishitani, Y, Nonaka, T, Kita, A. | Deposit date: | 2007-03-30 | Release date: | 2007-05-22 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Crystal Structure of Uridine-diphospho-N-acetylglucosamine Pyrophosphorylase from Candida albicans and Catalytic Reaction Mechanism J.Biol.Chem., 282, 2007
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2YQC
| Crystal Structure of uridine-diphospho-N-acetylglucosamine pyrophosphorylase from Candida albicans, in the apo-like form | Descriptor: | GLYCEROL, MAGNESIUM ION, UDP-N-acetylglucosamine pyrophosphorylase | Authors: | Miki, K, Maruyama, D, Nishitani, Y, Nonaka, T, Kita, A. | Deposit date: | 2007-03-30 | Release date: | 2007-05-22 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Crystal Structure of Uridine-diphospho-N-acetylglucosamine Pyrophosphorylase from Candida albicans and Catalytic Reaction Mechanism J.Biol.Chem., 282, 2007
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7BXV
| 11A1 antibody-peptide complex | Descriptor: | 1,2-ETHANEDIOL, Fab of the 11A1 antibody H chain, Fab of the 11A1 antibody L chain, ... | Authors: | Irie, K, Irie, Y, Kita, A, Miki, K. | Deposit date: | 2020-04-21 | Release date: | 2021-04-21 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.75 Å) | Cite: | APOE epsilon 4 allele advances the age-dependent decline of amyloid beta clearance in the human cortex. Biorxiv, 2022
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4V8K
| Crystal structure of the LH1-RC complex from Thermochromatium tepidum in P21 form | Descriptor: | BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, CALCIUM ION, ... | Authors: | Niwa, S, Takeda, K, Wang-Otomo, Z.-Y, Miki, K. | Deposit date: | 2013-11-22 | Release date: | 2014-07-09 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (3.006 Å) | Cite: | Structure of the LH1-RC complex from Thermochromatium tepidum at 3.0 angstrom Nature, 508, 2014
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5D8V
| Ultra-high resolution structure of high-potential iron-sulfur protein | Descriptor: | GLYCEROL, High-potential iron-sulfur protein, IRON/SULFUR CLUSTER, ... | Authors: | Hirano, Y, Takeda, K, Miki, K. | Deposit date: | 2015-08-18 | Release date: | 2016-05-25 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (0.48 Å) | Cite: | Charge-density analysis of an iron-sulfur protein at an ultra-high resolution of 0.48 angstrom Nature, 534, 2016
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5DHE
| Crystal structure of ChBD3 from Thermococcus kodakarensis KOD1 | Descriptor: | Chitinase, GLYCEROL | Authors: | Niwa, S, Hibi, M, Takeda, K, Miki, K. | Deposit date: | 2015-08-30 | Release date: | 2016-02-10 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Crystal structures of chitin binding domains of chitinase from Thermococcus kodakarensis KOD1 Febs Lett., 590, 2016
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5CXM
| Crystal structure of the cyanobacterial plasma membrane Rieske protein PetC3 from Synechocystis PCC 6803 | Descriptor: | Cytochrome b6/f complex iron-sulfur subunit, FE2/S2 (INORGANIC) CLUSTER, NICKEL (II) ION, ... | Authors: | Veit, S, Takeda, K, Miki, K, Roegner, M. | Deposit date: | 2015-07-29 | Release date: | 2016-08-03 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Structural and functional characterisation of the cyanobacterial PetC3 Rieske protein family. Biochim. Biophys. Acta, 1857, 2016
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3FF5
| Crystal structure of the conserved N-terminal domain of the peroxisomal matrix-protein-import receptor, Pex14p | Descriptor: | Peroxisomal biogenesis factor 14, decyl 2-trimethylazaniumylethyl phosphate | Authors: | Su, J.-R, Takeda, K, Tamura, S, Fujiki, Y, Miki, K. | Deposit date: | 2008-12-01 | Release date: | 2008-12-30 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Crystal structure of the conserved N-terminal domain of the peroxisomal matrix protein import receptor, Pex14p Proc.Natl.Acad.Sci.USA, 106, 2009
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8H8Q
| Fab-amyloid beta fragment complex at neutral pH | Descriptor: | CHLORIDE ION, Fab, GLN-LYS-CYS-VAL-PHE-PHE-ALA-GLU-ASP-VAL-GLY-SER-ASN-CYS-GLY, ... | Authors: | Kita, A, Irie, K, Irie, Y, Matsushima, Y, Miki, K. | Deposit date: | 2022-10-24 | Release date: | 2023-10-25 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Fab-amyloid beta fragment complex at neutral pH To Be Published
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7Y3J
| 24B3 antibody-peptide complex | Descriptor: | 24B3 Heavy chain, 24B3 Light chain, ALA-LEU-VAL-PHE-PHE-ALA-PRO-ALA-VAL-GLY-SER | Authors: | Irie, K, Irie, Y, Kita, A, Miki, K. | Deposit date: | 2022-06-11 | Release date: | 2022-08-17 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (2.6 Å) | Cite: | Structural basis of the 24B3 antibody against the toxic conformer of amyloid beta with a turn at positions 22 and 23. Biochem.Biophys.Res.Commun., 621, 2022
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3HRX
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5GV8
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5GV7
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5ZUI
| Crystal Structure of HSP104 from Chaetomium thermophilum | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, Heat Shock Protein 104, SULFATE ION | Authors: | Hanazono, Y, Inoue, Y, Noguchi, K, Yohda, M, Shinohara, K, Takeda, K, Miki, K. | Deposit date: | 2018-05-07 | Release date: | 2019-06-19 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.701 Å) | Cite: | Split conformation of Chaetomium thermophilum Hsp104 disaggregase. Structure, 2021
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4XF6
| myo-inositol 3-kinase bound with its products (ADP and 1D-myo-inositol 3-phosphate) | Descriptor: | 1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE, 1,2-ETHANEDIOL, ADENOSINE-5'-DIPHOSPHATE, ... | Authors: | Nagata, R, Fujihashi, M, Miki, K. | Deposit date: | 2014-12-26 | Release date: | 2015-06-03 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.08 Å) | Cite: | Crystal Structure and Product Analysis of an Archaeal myo-Inositol Kinase Reveal Substrate Recognition Mode and 3-OH Phosphorylation Biochemistry, 54, 2015
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4XF7
| myo-inositol 3-kinase bound with its substrates (AMPPCP and myo-inositol) | Descriptor: | 1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE, Carbohydrate/pyrimidine kinase, PfkB family, ... | Authors: | Nagata, R, Fujihashi, M, Miki, K. | Deposit date: | 2014-12-26 | Release date: | 2015-06-03 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.93 Å) | Cite: | Crystal Structure and Product Analysis of an Archaeal myo-Inositol Kinase Reveal Substrate Recognition Mode and 3-OH Phosphorylation Biochemistry, 54, 2015
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3KDO
| Crystal structure of Type III Rubisco SP6 mutant complexed with 2-CABP | Descriptor: | 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, MAGNESIUM ION, Ribulose bisphosphate carboxylase | Authors: | Nishitani, Y, Fujihashi, M, Doi, T, Yoshida, S, Atomi, H, Imanaka, T, Miki, K. | Deposit date: | 2009-10-23 | Release date: | 2010-10-06 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.36 Å) | Cite: | Structure-based catalytic optimization of a type III Rubisco from a hyperthermophile J.Biol.Chem., 285, 2010
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3KDN
| Crystal structure of Type III Rubisco SP4 mutant complexed with 2-CABP | Descriptor: | 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, MAGNESIUM ION, Ribulose bisphosphate carboxylase | Authors: | Nishitani, Y, Fujihashi, M, Doi, T, Yoshida, S, Atomi, H, Imanaka, T, Miki, K. | Deposit date: | 2009-10-23 | Release date: | 2010-10-06 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.09 Å) | Cite: | Structure-based catalytic optimization of a type III Rubisco from a hyperthermophile J.Biol.Chem., 285, 2010
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5DHD
| Crystal structure of ChBD2 from Thermococcus kodakarensis KOD1 | Descriptor: | 3,6,9,12,15,18,21,24,27,30,33,36,39-TRIDECAOXAHENTETRACONTANE-1,41-DIOL, Chitinase, SULFATE ION | Authors: | Hibi, M, Niwa, S, Takeda, K, Miki, K. | Deposit date: | 2015-08-30 | Release date: | 2016-02-10 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.27 Å) | Cite: | Crystal structures of chitin binding domains of chitinase from Thermococcus kodakarensis KOD1 Febs Lett., 590, 2016
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