4I8C
 
 | | X-ray structure of NikA in complex with Ni-(L-His)2 | | Descriptor: | ACETATE ION, CHLORIDE ION, GLYCEROL, ... | | Authors: | Lebrette, H, Iannello, M, Fontecilla-Camps, J.C, Cavazza, C. | | Deposit date: | 2012-12-03 | | Release date: | 2013-01-30 | | Last modified: | 2023-09-20 | | Method: | X-RAY DIFFRACTION (2.503 Å) | | Cite: | The binding mode of Ni-((L)-His)(2) in NikA revealed by X-ray crystallography.
J.Inorg.Biochem., 121C, 2012
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8BT3
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8BT4
 | | Ribonucleotide Reductase class Ie R2 from Mesoplasma florum, radical-lost ground state | | Descriptor: | CALCIUM ION, GLYCEROL, Ribonucleoside-diphosphate reductase | | Authors: | Lebrette, H, Srinivas, V, Hogbom, M. | | Deposit date: | 2022-11-27 | | Release date: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (1.35 Å) | | Cite: | Structure of a ribonucleotide reductase R2 protein radical.
Science, 382, 2023
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4XKP
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4XKR
 | | Crystal structure of NikA from Staphylococcus aureus in complex with Ni-(L-His)(2-methyl-thiazolidine dicarboxylate) (co-crystallization with Ni(II) and CDdeltaHis medium supernatant) | | Descriptor: | (2R,4R)-2-methyl-1,3-thiazolidine-2,4-dicarboxylic acid, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, GLYCEROL, ... | | Authors: | Lebrette, H, Cavazza, C. | | Deposit date: | 2015-01-12 | | Release date: | 2015-02-11 | | Last modified: | 2024-01-10 | | Method: | X-RAY DIFFRACTION (1.75 Å) | | Cite: | Novel insights into nickel import in Staphylococcus aureus: the positive role of free histidine and structural characterization of a new thiazolidine-type nickel chelator.
Metallomics, 7, 2015
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4XKQ
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4XKN
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4OET
 | | Crystal structure of NikZ from Campylobacter jejuni, unliganded form | | Descriptor: | GLYCEROL, Putative peptide ABC-transport system periplasmic peptide-binding protein | | Authors: | Lebrette, H, Cavazza, C. | | Deposit date: | 2014-01-13 | | Release date: | 2014-10-01 | | Last modified: | 2023-09-20 | | Method: | X-RAY DIFFRACTION (2.4 Å) | | Cite: | Promiscuous nickel import in human pathogens: structure, thermodynamics, and evolution of extracytoplasmic nickel-binding proteins.
Structure, 22, 2014
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4OEU
 | | Crystal structure of NikZ from Campylobacter jejuni in complex with Ni(L-His) | | Descriptor: | DI(HYDROXYETHYL)ETHER, GLYCEROL, HISTIDINE, ... | | Authors: | Lebrette, H, Cavazza, C. | | Deposit date: | 2014-01-13 | | Release date: | 2014-10-01 | | Last modified: | 2023-09-20 | | Method: | X-RAY DIFFRACTION (2.2 Å) | | Cite: | Promiscuous nickel import in human pathogens: structure, thermodynamics, and evolution of extracytoplasmic nickel-binding proteins.
Structure, 22, 2014
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4OFL
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4OES
 | | Crystal structure of NikA from Brucella suis in complex with Fe(III)-EDTA | | Descriptor: | FE (III) ION, GLYCEROL, NikA protein, ... | | Authors: | Lebrette, H, Cavazza, C. | | Deposit date: | 2014-01-13 | | Release date: | 2014-10-01 | | Last modified: | 2023-09-20 | | Method: | X-RAY DIFFRACTION (1.951 Å) | | Cite: | Promiscuous nickel import in human pathogens: structure, thermodynamics, and evolution of extracytoplasmic nickel-binding proteins.
Structure, 22, 2014
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4OER
 | | Crystal structure of NikA from Brucella suis, unliganded form | | Descriptor: | GLYCEROL, NikA protein, SULFATE ION | | Authors: | Lebrette, H, Cavazza, C. | | Deposit date: | 2014-01-13 | | Release date: | 2014-10-01 | | Last modified: | 2023-09-20 | | Method: | X-RAY DIFFRACTION (1.85 Å) | | Cite: | Promiscuous nickel import in human pathogens: structure, thermodynamics, and evolution of extracytoplasmic nickel-binding proteins.
Structure, 22, 2014
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4OFO
 | | Crystal structure of YntA from Yersinia pestis, unliganded form | | Descriptor: | Extracytoplasmic Nickel-Binding Protein YpYntA, NICKEL (II) ION | | Authors: | Lebrette, H, Cavazza, C. | | Deposit date: | 2014-01-15 | | Release date: | 2014-10-01 | | Last modified: | 2023-09-20 | | Method: | X-RAY DIFFRACTION (3 Å) | | Cite: | Promiscuous nickel import in human pathogens: structure, thermodynamics, and evolution of extracytoplasmic nickel-binding proteins.
Structure, 22, 2014
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4OEV
 | | Crystal structure of NikZ from Campylobacter jejuni in complex with Ni(II) ion | | Descriptor: | GLYCEROL, NICKEL (II) ION, OXALATE ION, ... | | Authors: | Lebrette, H, Cavazza, C. | | Deposit date: | 2014-01-13 | | Release date: | 2014-10-01 | | Last modified: | 2023-09-20 | | Method: | X-RAY DIFFRACTION (1.9 Å) | | Cite: | Promiscuous nickel import in human pathogens: structure, thermodynamics, and evolution of extracytoplasmic nickel-binding proteins.
Structure, 22, 2014
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4OFJ
 | | Crystal structure of NikA from Staphylococcus aureus in complex with Ni(L-His)2 | | Descriptor: | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Extracytoplasmic Nickel-Binding Protein SaNikA, GLYCEROL, ... | | Authors: | Lebrette, H, Cavazza, C. | | Deposit date: | 2014-01-14 | | Release date: | 2015-02-04 | | Last modified: | 2023-09-20 | | Method: | X-RAY DIFFRACTION (1.7 Å) | | Cite: | Novel insights into nickel import in Staphylococcus aureus: the positive role of free histidine and structural characterization of a new thiazolidine-type nickel chelator.
Metallomics, 7, 2015
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7QBK
 | | Crystal structure of a second homolog of R2-like ligand-binding oxidase in Sulfolobus acidocaldarius (SaR2loxII) | | Descriptor: | FE (III) ION, MANGANESE (III) ION, R2-like ligand-binding oxidase (homolog II) from Sulfolobus acidocaldarius | | Authors: | Lebrette, H, Diamanti, R, Srinivas, V, Hogbom, M. | | Deposit date: | 2021-11-19 | | Release date: | 2022-04-06 | | Last modified: | 2024-01-31 | | Method: | X-RAY DIFFRACTION (2.26 Å) | | Cite: | Comparative structural analysis provides new insights into the function of R2-like ligand-binding oxidase.
Febs Lett., 596, 2022
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4LPS
 | | Crystal structure of HypB from Helicobacter pylori in complex with nickel | | Descriptor: | GLYCEROL, GUANOSINE-5'-DIPHOSPHATE, Hydrogenase/urease nickel incorporation protein HypB, ... | | Authors: | Lebrette, H, Sydor, A.M, Ariyakumaran, R, Zamble, D.B, Cavazza, C. | | Deposit date: | 2013-07-16 | | Release date: | 2013-12-18 | | Last modified: | 2023-09-20 | | Method: | X-RAY DIFFRACTION (2 Å) | | Cite: | Relationship between Ni(II) and Zn(II) Coordination and Nucleotide Binding by the Helicobacter pylori [NiFe]-Hydrogenase and Urease Maturation Factor HypB.
J.Biol.Chem., 289, 2014
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4UCW
 | | Structure of the T18V small subunit mutant of D. fructosovorans NiFe- hydrogenase | | Descriptor: | CARBONMONOXIDE-(DICYANO) IRON, FE3-S4 CLUSTER, GLYCEROL, ... | | Authors: | Abou-Hamdan, A, Ceccaldi, P, Lebrette, H, Guttierez-Sanz, O, Richaud, P, Cournac, L, Guigliarelli, B, deLacey, A.L, Leger, C, Volbeda, A, Burlat, B, Dementin, S. | | Deposit date: | 2014-12-04 | | Release date: | 2015-02-18 | | Last modified: | 2023-12-20 | | Method: | X-RAY DIFFRACTION (2.3 Å) | | Cite: | A Threonine Stabilizes the Nic and Nir Catalytic Intermediates of [Nife]-Hydrogenase.
J.Biol.Chem., 290, 2015
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6QRZ
 | | Crystal structure of R2-like ligand-binding oxidase from Sulfolobus acidocaldarius solved by 3D micro-crystal electron diffraction | | Descriptor: | FE (III) ION, MANGANESE (III) ION, Ribonucleoside-diphosphate reductase | | Authors: | Xu, H, Lebrette, H, Clabbers, M.T.B, Zhao, J, Griese, J.J, Zou, X, Hogbom, M. | | Deposit date: | 2019-02-20 | | Release date: | 2019-04-24 | | Last modified: | 2024-05-15 | | Method: | ELECTRON CRYSTALLOGRAPHY (3 Å) | | Cite: | Solving a new R2lox protein structure by microcrystal electron diffraction.
Sci Adv, 5, 2019
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6GP2
 | | Ribonucleotide Reductase class Ie R2 from Mesoplasma florum, DOPA-active form | | Descriptor: | CALCIUM ION, Ribonucleoside-diphosphate reductase beta chain | | Authors: | Srinivas, V, Lebrette, H, Lundin, D, Kutin, Y, Sahlin, M, Lerche, M, Enrich, J, Branca, R.M.M, Cox, N, Sjoberg, B.M, Hogbom, M. | | Deposit date: | 2018-06-05 | | Release date: | 2018-08-22 | | Last modified: | 2024-01-17 | | Method: | X-RAY DIFFRACTION (1.48 Å) | | Cite: | Metal-free ribonucleotide reduction powered by a DOPA radical in Mycoplasma pathogens.
Nature, 563, 2018
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4UCX
 | | Structure of the T18G small subunit mutant of D. fructosovorans NiFe- hydrogenase | | Descriptor: | CARBONMONOXIDE-(DICYANO) IRON, FE3-S4 CLUSTER, GLYCEROL, ... | | Authors: | Abou-Hamdan, A, Ceccaldi, P, Lebrette, H, Guttierez-Sanz, O, Richaud, P, Cournac, L, Guigliarelli, B, deLacey, A.L, Leger, C, Volbeda, A, Burlat, B, Dementin, S. | | Deposit date: | 2014-12-05 | | Release date: | 2015-02-18 | | Last modified: | 2023-12-20 | | Method: | X-RAY DIFFRACTION (1.95 Å) | | Cite: | A threonine stabilizes the NiC and NiR catalytic intermediates of [NiFe]-hydrogenase.
J. Biol. Chem., 290, 2015
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4UCQ
 | | Structure of the T18D small subunit mutant of D. fructosovorans NiFe- hydrogenase | | Descriptor: | CARBONMONOXIDE-(DICYANO) IRON, FE3-S4 CLUSTER, GLYCEROL, ... | | Authors: | Abou-Hamdan, A, Ceccaldi, P, Lebrette, H, Guttierez-Sanz, O, Richaud, P, Cournac, L, Guigliarelli, B, deLacey, A.L, Leger, C, Volbeda, A, Burlat, B, Dementin, S. | | Deposit date: | 2014-12-04 | | Release date: | 2015-02-18 | | Last modified: | 2023-12-20 | | Method: | X-RAY DIFFRACTION (2.6 Å) | | Cite: | A threonine stabilizes the NiC and NiR catalytic intermediates of [NiFe]-hydrogenase.
J. Biol. Chem., 290, 2015
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3QIM
 | | Histidine 416 of the periplamsic binding protein NikA is essential for nickel uptake in Escherichia coli | | Descriptor: | ACETATE ION, GLYCEROL, Nickel-binding periplasmic protein, ... | | Authors: | Cavazza, C, Martin, L, Laffly, E, Lebrette, H, Cherrier, M.V, Zeppieri, L, Richaud, P, Carriere, M, Fontecilla-Camps, J.C. | | Deposit date: | 2011-01-27 | | Release date: | 2011-03-02 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (2.1 Å) | | Cite: | Histidine 416 of the periplasmic binding protein NikA is essential for nickel uptake in Escherichia coli
Febs Lett., 585, 2011
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5OCV
 | | A Rare Lysozyme Crystal Form Solved Using High-Redundancy 3D Electron Diffraction Data from Micron-Sized Needle Shaped Crystals | | Descriptor: | Lysozyme C, SODIUM ION | | Authors: | Xu, H, Lebrette, H, Yang, T, Srinivas, V, Hovmoller, S, Hogbom, M, Zou, X. | | Deposit date: | 2017-07-03 | | Release date: | 2018-03-28 | | Last modified: | 2024-01-17 | | Method: | ELECTRON CRYSTALLOGRAPHY (2.2 Å) | | Cite: | A Rare Lysozyme Crystal Form Solved Using Highly Redundant Multiple Electron Diffraction Datasets from Micron-Sized Crystals.
Structure, 26, 2018
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7QBP
 | | Crystal structure of R2-like ligand-binding oxidase from Saccharopolyspora Erythraea | | Descriptor: | FE (III) ION, MANGANESE (III) ION, PALMITIC ACID, ... | | Authors: | Srinivas, V, Diamanti, R, Lebrette, H, Hogbom, M. | | Deposit date: | 2021-11-19 | | Release date: | 2022-04-06 | | Last modified: | 2024-01-31 | | Method: | X-RAY DIFFRACTION (1.38 Å) | | Cite: | Comparative structural analysis provides new insights into the function of R2-like ligand-binding oxidase.
Febs Lett., 596, 2022
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