5YZD
| Crystal structure of the prefusion form of measles virus fusion protein in complex with a fusion inhibitor peptide (FIP) | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, glycoprotein F1,measles virus fusion protein, ... | 著者 | Hashiguchi, T, Fukuda, Y, Matsuoka, R, Kuroda, D, Kubota, M, Shirogane, Y, Watanabe, S, Tsumoto, K, Kohda, D, Plemper, R.K, Yanagi, Y. | 登録日 | 2017-12-14 | 公開日 | 2018-02-21 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.636 Å) | 主引用文献 | Structures of the prefusion form of measles virus fusion protein in complex with inhibitors. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
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5YZC
| Crystal structure of the prefusion form of measles virus fusion protein in complex with a fusion inhibitor compound (AS-48) | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 4-nitro-2-[(phenylacetyl)amino]benzamide, ... | 著者 | Hashiguchi, T, Fukuda, Y, Matsuoka, R, Kuroda, D, Kubota, M, Shirogane, Y, Watanabe, S, Tsumoto, K, Kohda, D, Plemper, R.K, Yanagi, Y. | 登録日 | 2017-12-14 | 公開日 | 2018-02-21 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.334 Å) | 主引用文献 | Structures of the prefusion form of measles virus fusion protein in complex with inhibitors. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
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2D7E
| Crystal structure of N-terminal domain of PriA from E.coli | 分子名称: | Primosomal protein N' | 著者 | Sasaki, K, Ose, T, Maenaka, K, Masai, H, Kohda, D. | 登録日 | 2005-11-18 | 公開日 | 2006-11-07 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | 主引用文献 | Structural basis of the 3'-end recognition of a leading strand in stalled replication forks by PriA. EMBO J., 26, 2007
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2D7G
| Crystal structure of the aa complex of the N-terminal domain of PriA | 分子名称: | DNA (5'-D(P*AP*A)-3'), Primosomal protein N' | 著者 | Sasaki, K, Ose, T, Maenaka, K, Masai, H, Kohda, D. | 登録日 | 2005-11-21 | 公開日 | 2006-11-07 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (3.3 Å) | 主引用文献 | Structural basis of the 3'-end recognition of a leading strand in stalled replication forks by PriA. EMBO J., 26, 2007
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2D7H
| Crystal structure of the ccc complex of the N-terminal domain of PriA | 分子名称: | DNA (5'-D(P*CP*CP*C)-3'), Primosomal protein N' | 著者 | Sasaki, K, Ose, T, Maenaka, K, Masai, H, Kohda, D. | 登録日 | 2005-11-21 | 公開日 | 2006-11-07 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (3 Å) | 主引用文献 | Structural basis of the 3'-end recognition of a leading strand in stalled replication forks by PriA. EMBO J., 26, 2007
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6KNC
| PolD-PCNA-DNA (form B) | 分子名称: | DNA polymerase D DP2 (DNA polymerase II large) subunit, DNA polymerase II small subunit, DNA polymerase sliding clamp 1, ... | 著者 | Mayanagi, K, Oki, K, Miyazaki, N, Ishino, S, Yamagami, T, Iwasaki, K, Kohda, D, Morikawa, K, Shirai, T, Ishino, Y. | 登録日 | 2019-08-05 | 公開日 | 2020-08-05 | 最終更新日 | 2024-03-27 | 実験手法 | ELECTRON MICROSCOPY (9.3 Å) | 主引用文献 | Two conformations of DNA polymerase D-PCNA-DNA, an archaeal replisome complex, revealed by cryo-electron microscopy. Bmc Biol., 18, 2020
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6K7D
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6K7E
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1VSR
| VERY SHORT PATCH REPAIR (VSR) ENDONUCLEASE FROM ESCHERICHIA COLI | 分子名称: | PROTEIN (VSR ENDONUCLEASE), ZINC ION | 著者 | Tsutakawa, S.E, Muto, T, Jingami, H, Kunishima, N, Ariyoshi, M, Kohda, D, Nakagawa, M, Morikawa, K. | 登録日 | 1999-02-13 | 公開日 | 1999-10-27 | 最終更新日 | 2023-12-27 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Crystallographic and functional studies of very short patch repair endonuclease. Mol.Cell, 3, 1999
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6KNB
| PolD-PCNA-DNA (form A) | 分子名称: | DNA polymerase D DP2 (DNA polymerase II large) subunit, DNA polymerase II small subunit, DNA polymerase sliding clamp 1, ... | 著者 | Mayanagi, K, Oki, K, Miyazaki, N, Ishino, S, Yamagami, T, Iwasaki, K, Kohda, D, Morikawa, K, Shirai, T, Ishino, Y. | 登録日 | 2019-08-05 | 公開日 | 2020-08-05 | 最終更新日 | 2021-02-17 | 実験手法 | ELECTRON MICROSCOPY (6.9 Å) | 主引用文献 | Two conformations of DNA polymerase D-PCNA-DNA, an archaeal replisome complex, revealed by cryo-electron microscopy. Bmc Biol., 18, 2020
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1VDG
| Crystal structure of LIR1.01, one of the alleles of LIR1 | 分子名称: | Leukocyte immunoglobulin-like receptor subfamily B member 1 | 著者 | Shiroishi, M, Rasubala, L, Kuroki, K, Amano, K, Tsuchiya, N, Tokunaga, K, Kohda, D, Maenaka, K. | 登録日 | 2004-03-22 | 公開日 | 2005-08-02 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.8 Å) | 主引用文献 | Crystal structure of LIR1.03, one of the alleles of LIR1 To be Published
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1WOC
| Crystal structure of PriB | 分子名称: | Primosomal replication protein n | 著者 | Shioi, S, Ose, T, Maenaka, K, Abe, Y, Kohda, D, Katayama, T, Ueda, T. | 登録日 | 2004-08-13 | 公開日 | 2005-01-25 | 最終更新日 | 2012-12-05 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | Crystal structure of a biologically functional form of PriB from Escherichia coli reveals a potential single-stranded DNA-binding site Biochem.Biophys.Res.Commun., 326, 2005
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6IKN
| Crystal structure of the GAS7 F-BAR domain | 分子名称: | Growth arrest-specific protein 7 | 著者 | Hanawa-Suetsugu, K, Itoh, Y, Kohda, D, Shimada, A, Suetsugu, S. | 登録日 | 2018-10-16 | 公開日 | 2019-10-16 | 最終更新日 | 2019-10-30 | 実験手法 | X-RAY DIFFRACTION (3 Å) | 主引用文献 | Phagocytosis is mediated by two-dimensional assemblies of the F-BAR protein GAS7. Nat Commun, 10, 2019
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6IKO
| Crystal structure of mouse GAS7cb | 分子名称: | Growth arrest-specific protein 7 | 著者 | Hanawa-Suetsugu, K, Itoh, Y, Kohda, D, Shimada, A, Suetsugu, S. | 登録日 | 2018-10-16 | 公開日 | 2019-10-16 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (3.756 Å) | 主引用文献 | Phagocytosis is mediated by two-dimensional assemblies of the F-BAR protein GAS7. Nat Commun, 10, 2019
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6K8Q
| Solution structure of the intermembrane space domain of the mitochondrial import protein Tim21 from S. cerevisiae | 分子名称: | Mitochondrial import inner membrane translocase subunit TIM21 | 著者 | Bala, S, Shinya, S, Srivastava, A, Shimada, A, Kobayashi, N, Kojima, C, Tama, F, Miyashita, O, Kohda, D. | 登録日 | 2019-06-13 | 公開日 | 2019-09-11 | 最終更新日 | 2024-05-15 | 実験手法 | SOLUTION NMR | 主引用文献 | Crystal contact-free conformation of an intrinsically flexible loop in protein crystal: Tim21 as the case study. Biochim Biophys Acta Gen Subj, 1864, 2020
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6K7F
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2V1T
| CRYSTAL STRUCTURE OF RAT TOM20-ALDH PRESEQUENCE COMPLEX | 分子名称: | ALDEHYDE DEHYDROGENASE, MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM20 HOMOLOG | 著者 | Obita, T, Igura, M, Ose, T, Endo, T, Maenaka, K, Kohda, D. | 登録日 | 2007-05-29 | 公開日 | 2007-06-12 | 最終更新日 | 2011-07-13 | 実験手法 | X-RAY DIFFRACTION (1.92 Å) | 主引用文献 | Tom20 Recognizes Mitochondrial Presequences Through Dynamic Equilibrium Among Multiple Bound States. Embo J., 26, 2007
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2V1S
| CRYSTAL STRUCTURE OF RAT TOM20-ALDH PRESEQUENCE COMPLEX | 分子名称: | ALDEHYDE DEHYDROGENASE, MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM20 HOMOLOG | 著者 | Obita, T, Igura, M, Ose, T, Endo, T, Maenaka, K, Kohda, D. | 登録日 | 2007-05-29 | 公開日 | 2007-06-12 | 最終更新日 | 2023-12-13 | 実験手法 | X-RAY DIFFRACTION (2.05 Å) | 主引用文献 | Tom20 Recognizes Mitochondrial Presequences Through Dynamic Equilibrium Among Multiple Bound States. Embo J., 26, 2007
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2MLO
| Human CCR2 Membrane-Proximal C-Terminal Region (PRO-C) in a Membrane bound form | 分子名称: | MCP-1 receptor | 著者 | Esaki, K, Yoshinaga, S, Tsuji, T, Toda, E, Terashima, Y, Saitoh, T, Kohda, D, Kohno, T, Osawa, M, Ueda, T, Shimada, I, Matsushima, K, Terasawa, H. | 登録日 | 2014-03-04 | 公開日 | 2014-10-08 | 最終更新日 | 2024-05-15 | 実験手法 | SOLUTION NMR | 主引用文献 | Structural basis for the binding of the membrane-proximal C-terminal region of chemokine receptor CCR2 with the cytosolic regulator FROUNT. Febs J., 281, 2014
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2MLQ
| Human CCR2 Membrane-Proximal C-Terminal Region (PRO-C) in a frount bound form | 分子名称: | MCP-1 receptor | 著者 | Esaki, K, Yoshinaga, S, Tsuji, T, Toda, E, Terashima, Y, Saitoh, T, Kohda, D, Kohno, T, Osawa, M, Ueda, T, Shimada, I, Matsushima, K, Terasawa, H. | 登録日 | 2014-03-04 | 公開日 | 2014-10-08 | 最終更新日 | 2024-05-15 | 実験手法 | SOLUTION NMR | 主引用文献 | Structural basis for the binding of the membrane-proximal C-terminal region of chemokine receptor CCR2 with the cytosolic regulator FROUNT. Febs J., 281, 2014
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1K4U
| Solution structure of the C-terminal SH3 domain of p67phox complexed with the C-terminal tail region of p47phox | 分子名称: | PHAGOCYTE NADPH OXIDASE SUBUNIT P47PHOX, PHAGOCYTE NADPH OXIDASE SUBUNIT P67PHOX | 著者 | Kami, K, Takeya, R, Sumimoto, H, Kohda, D. | 登録日 | 2001-10-08 | 公開日 | 2002-04-08 | 最終更新日 | 2021-11-10 | 実験手法 | SOLUTION NMR | 主引用文献 | Diverse recognition of non-PxxP peptide ligands by the SH3 domains from p67(phox), Grb2 and Pex13p. EMBO J., 21, 2002
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5YCQ
| Unique Specificity-Enhancing Factor for the AAA+ Lon Protease | 分子名称: | Heat shock protein HspQ | 著者 | Abe, Y, Shioi, S, Kita, S, Nakata, H, Maenaka, K, Kohda, D, Katayama, T, Ueda, T. | 登録日 | 2017-09-08 | 公開日 | 2018-04-11 | 実験手法 | X-RAY DIFFRACTION (2.503 Å) | 主引用文献 | X-ray crystal structure of Escherichia coli HspQ, a protein involved in the retardation of replication initiation FEBS Lett., 591, 2017
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1L4V
| SOLUTION STRUCTURE OF SAPECIN | 分子名称: | Sapecin | 著者 | Hanzawa, H, Iwai, H, Takeuchi, K, Kuzuhara, T, Komano, H, Kohda, D, Inagaki, F, Natori, S, Arata, Y, Shimada, I. | 登録日 | 2002-03-06 | 公開日 | 2002-03-27 | 最終更新日 | 2022-02-23 | 実験手法 | SOLUTION NMR | 主引用文献 | 1H nuclear magnetic resonance study of the solution conformation of an antibacterial protein, sapecin. FEBS Lett., 269, 1990
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1OM2
| SOLUTION NMR STRUCTURE OF THE MITOCHONDRIAL PROTEIN IMPORT RECEPTOR TOM20 FROM RAT IN A COMPLEX WITH A PRESEQUENCE PEPTIDE DERIVED FROM RAT ALDEHYDE DEHYDROGENASE (ALDH) | 分子名称: | PROTEIN (MITOCHONDRIAL ALDEHYDE DEHYDROGENASE), PROTEIN (MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM20) | 著者 | Abe, Y, Shodai, T, Muto, T, Mihara, K, Torii, H, Nishikawa, S, Endo, T, Kohda, D. | 登録日 | 1999-04-23 | 公開日 | 2000-02-02 | 最終更新日 | 2023-12-27 | 実験手法 | SOLUTION NMR | 主引用文献 | Structural basis of presequence recognition by the mitochondrial protein import receptor Tom20. Cell(Cambridge,Mass.), 100, 2000
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2D31
| Crystal structure of disulfide-linked HLA-G dimer | 分子名称: | 9-mer peptide from Histone H2A, Beta-2-microglobulin, HLA class I histocompatibility antigen, ... | 著者 | Shiroishi, M, Kuroki, K, Ose, T, Rasubala, L, Shiratori, I, Arase, H, Tsumoto, K, Kumagai, I, Kohda, D, Maenaka, K. | 登録日 | 2005-09-23 | 公開日 | 2006-03-14 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (3.2 Å) | 主引用文献 | Efficient Leukocyte Ig-like Receptor Signaling and Crystal Structure of Disulfide-linked HLA-G Dimer J.Biol.Chem., 281, 2006
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