Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
5MMP
DownloadVisualize
BU of 5mmp by Molmil
E. coli DNA Gyrase B 24 kDa ATPase domain in complex with 1-ethyl-3-[5-pyridin-4-yl-8-(pyridin-3-ylamino)-isoquinolin-3-yl]-urea
Descriptor: 1-ethyl-3-[5-pyridin-4-yl-8-(pyridin-3-ylamino)isoquinolin-3-yl]urea, DNA gyrase subunit B
Authors:Panchaud, P, Bruyere, T, Blumstein, A.-C, Bur, D, Chambovey, A, Ertel, E.A, Gude, M, Hubschwerlen, C, Jacob, L, Kimmerlin, T, Pfeifer, T, Prade, L, Seiler, P, Ritz, D, Rueedi, G.
Deposit date:2016-12-12
Release date:2017-04-26
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Discovery and Optimization of Isoquinoline Ethyl Ureas as Antibacterial Agents.
J. Med. Chem., 60, 2017
5MMN
DownloadVisualize
BU of 5mmn by Molmil
E. coli DNA Gyrase B 24 kDa ATPase domain in complex with 1-ethyl-3-[8-methyl-5-(2-methyl-pyridin-4-yl)-isoquinolin-3-yl]-urea
Descriptor: 1-ethyl-3-[8-methyl-5-(2-methylpyridin-4-yl)isoquinolin-3-yl]urea, DNA gyrase subunit B
Authors:Panchaud, P, Bruyere, T, Blumstein, A.-C, Bur, D, Chambovey, A, Ertel, E.A, Gude, M, Hubschwerlen, C, Jacob, L, Kimmerlin, T, Pfeifer, T, Prade, L, Seiler, P, Ritz, D, Rueedi, G.
Deposit date:2016-12-12
Release date:2017-04-26
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Discovery and Optimization of Isoquinoline Ethyl Ureas as Antibacterial Agents.
J. Med. Chem., 60, 2017
5MMO
DownloadVisualize
BU of 5mmo by Molmil
E. coli DNA Gyrase B 24 kDa ATPase domain in complex with [3-(3-ethyl-ureido)-5-(pyridin-4-yl)-isoquinolin-8-yl-methyl]-carbamic acid prop-2-ynyl ester
Descriptor: DNA gyrase subunit B, PHOSPHATE ION, prop-2-ynyl ~{N}-[[3-(ethylcarbamoylamino)-5-pyridin-4-yl-isoquinolin-8-yl]methyl]carbamate
Authors:Panchaud, P, Bruyere, T, Blumstein, A.-C, Bur, D, Chambovey, A, Ertel, E.A, Gude, M, Hubschwerlen, C, Jacob, L, Kimmerlin, T, Pfeifer, T, Prade, L, Seiler, P, Ritz, D, Rueedi, G.
Deposit date:2016-12-12
Release date:2017-04-26
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Discovery and Optimization of Isoquinoline Ethyl Ureas as Antibacterial Agents.
J. Med. Chem., 60, 2017
9EZJ
DownloadVisualize
BU of 9ezj by Molmil
Apo human TDO in complex with a bound inhibitor (Cpd-4)
Descriptor: Tryptophan 2,3-dioxygenase, alpha-methyl-L-tryptophan, ethyl (9~{R})-2-methoxy-4-oxidanylidene-9-[[(1~{S})-1-phenylethyl]-[(2-propan-2-ylphenyl)carbamoyl]amino]-6,7,8,9-tetrahydropyrido[1,2-a]pyrimidine-3-carboxylate
Authors:Wicki, M, Mac Sweeney, A.
Deposit date:2024-04-12
Release date:2024-06-05
Method:X-RAY DIFFRACTION (2.612 Å)
Cite:Discovery and binding mode of small molecule inhibitors of the apo form of human TDO2
To Be Published
8QV7
DownloadVisualize
BU of 8qv7 by Molmil
Crystal structure of human TDO with alpha-methyl-L-tryptophan
Descriptor: GLYCEROL, Tryptophan 2,3-dioxygenase, alpha-methyl-L-tryptophan
Authors:Wicki, M, Mac Sweeney, A.
Deposit date:2023-10-17
Release date:2024-01-17
Method:X-RAY DIFFRACTION (2.66 Å)
Cite:Discovery and binding mode of a small molecule inhibitor of the apo form of human TDO2
Biorxiv, 2024
8R11
DownloadVisualize
BU of 8r11 by Molmil
Structure of compound 7 bound to SARS-CoV-2 main protease
Descriptor: 1,2-ETHANEDIOL, 1-[(2~{S})-2-(3-chlorophenyl)pyrrolidin-1-yl]-2-(5-methylpyridin-3-yl)ethanone, 3C-like proteinase, ...
Authors:Mac Sweeney, A, Hazemann, J.
Deposit date:2023-11-01
Release date:2024-02-07
Last modified:2024-07-03
Method:X-RAY DIFFRACTION (1.31 Å)
Cite:Identification of SARS-CoV-2 Mpro inhibitors through deep reinforcement learning for de novo drug design and computational chemistry approaches.
Rsc Med Chem, 15, 2024
8R14
DownloadVisualize
BU of 8r14 by Molmil
Structure of compound 11 bound to SARS-CoV-2 main protease
Descriptor: (5-chloranylpyridin-3-yl)-[4-[(2-chlorophenyl)methyl]-1,4-diazepan-1-yl]methanone, 3C-like proteinase, BROMIDE ION, ...
Authors:Mac Sweeney, A, Hazemann, J.
Deposit date:2023-11-01
Release date:2024-02-07
Last modified:2024-07-03
Method:X-RAY DIFFRACTION (1.336 Å)
Cite:Identification of SARS-CoV-2 Mpro inhibitors through deep reinforcement learning for de novo drug design and computational chemistry approaches.
Rsc Med Chem, 15, 2024
8R16
DownloadVisualize
BU of 8r16 by Molmil
Structure of compound 12 bound to SARS-CoV-2 main protease
Descriptor: 1,2-ETHANEDIOL, 1-[6,7-bis(chloranyl)-3,4-dihydro-1H-isoquinolin-2-yl]-2-(5-methylpyridin-3-yl)ethanone, 3C-like proteinase, ...
Authors:Mac Sweeney, A, Hazemann, J.
Deposit date:2023-11-01
Release date:2024-02-07
Last modified:2024-07-03
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Identification of SARS-CoV-2 Mpro inhibitors through deep reinforcement learning for de novo drug design and computational chemistry approaches.
Rsc Med Chem, 15, 2024
8R5R
DownloadVisualize
BU of 8r5r by Molmil
Structure of apo TDO with a bound inhibitor
Descriptor: 3-chloranyl-~{N}-[(1~{S})-1-(6-chloranylpyridin-3-yl)-2-phenyl-ethyl]aniline, Tryptophan 2,3-dioxygenase, alpha-methyl-L-tryptophan
Authors:Wicki, M, Mac Sweeney, A.
Deposit date:2023-11-17
Release date:2024-01-17
Method:X-RAY DIFFRACTION (3.078 Å)
Cite:Discovery and binding mode of a small molecule inhibitor of the apo form of human TDO2
Biorxiv, 2024
8R5Q
DownloadVisualize
BU of 8r5q by Molmil
Structure of apo TDO with a bound inhibitor
Descriptor: 3-chloranyl-~{N}-[(1~{S})-1-(6-chloranylpyridin-3-yl)-2-phenyl-ethyl]aniline, Tryptophan 2,3-dioxygenase, alpha-methyl-L-tryptophan
Authors:Wicki, M, Mac Sweeney, A.
Deposit date:2023-11-17
Release date:2024-01-17
Method:X-RAY DIFFRACTION (2.62 Å)
Cite:Discovery and binding mode of a small molecule inhibitor of the apo form of human TDO2
Biorxiv, 2024
8R12
DownloadVisualize
BU of 8r12 by Molmil
Structure of compound 8 bound to SARS-CoV-2 main protease
Descriptor: 2-[[4-(5-chloranylpyridin-3-yl)carbonyl-1,4-diazepan-1-yl]methyl]benzenecarbonitrile, 3C-like proteinase, CHLORIDE ION, ...
Authors:Mac Sweeney, A, Hazemann, J.
Deposit date:2023-11-01
Release date:2024-02-07
Last modified:2024-07-03
Method:X-RAY DIFFRACTION (1.587 Å)
Cite:Identification of SARS-CoV-2 Mpro inhibitors through deep reinforcement learning for de novo drug design and computational chemistry approaches.
Rsc Med Chem, 15, 2024

226707

PDB entries from 2024-10-30

PDB statisticsPDBj update infoContact PDBjnumon