Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
4TX1
DownloadVisualize
BU of 4tx1 by Molmil
The crystal structure of carbohydrate acetylesterase family member from Sinorhizobium meliloti
分子名称: Esterase
著者Kim, K, Kim, S.S, Pandian, R, Ngo, T.D.
登録日2014-07-02
公開日2014-12-24
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Structural and biochemical characterization of a carbohydrate acetylesterase from Sinorhizobium meliloti 1021.
Febs Lett., 589, 2015
7N4Y
DownloadVisualize
BU of 7n4y by Molmil
The structure of bovine thyroglobulin with iodinated tyrosines
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Kim, K, Clarke, O.B.
登録日2021-06-04
公開日2021-11-10
最終更新日2023-11-15
実験手法ELECTRON MICROSCOPY (2.61 Å)
主引用文献The structure of natively iodinated bovine thyroglobulin.
Acta Crystallogr D Struct Biol, 77, 2021
2FI7
DownloadVisualize
BU of 2fi7 by Molmil
Crystal Structure of PilF : Functional implication in the type 4 pilus biogenesis in Pseudomonas aeruginosa
分子名称: type 4 fimbrial biogenesis protein PilF
著者Kim, K.
登録日2005-12-28
公開日2006-06-28
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of PilF: functional implication in the type 4 pilus biogenesis in Pseudomonas aeruginosa
Biochem.Biophys.Res.Commun., 340, 2006
2HK0
DownloadVisualize
BU of 2hk0 by Molmil
Crystal structure of D-psicose 3-epimerase (DPEase) in the absence of substrate
分子名称: D-PSICOSE 3-EPIMERASE
著者Kim, K, Kim, H.J, Oh, D.K, Cha, S.S, Rhee, S.
登録日2006-07-03
公開日2006-08-29
最終更新日2017-10-18
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal Structure of d-Psicose 3-epimerase from Agrobacterium tumefaciens and its Complex with True Substrate d-Fructose: A Pivotal Role of Metal in Catalysis, an Active Site for the Non-phosphorylated Substrate, and its Conformational Changes
J.Mol.Biol., 361, 2006
2HK1
DownloadVisualize
BU of 2hk1 by Molmil
Crystal structure of D-psicose 3-epimerase (DPEase) in the presence of D-fructose
分子名称: D-PSICOSE 3-EPIMERASE, D-fructose, MANGANESE (II) ION
著者Kim, K, Kim, H.J, Oh, D.K, Cha, S.S, Rhee, S.
登録日2006-07-03
公開日2006-08-29
最終更新日2017-10-18
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal Structure of d-Psicose 3-epimerase from Agrobacterium tumefaciens and its Complex with True Substrate d-Fructose: A Pivotal Role of Metal in Catalysis, an Active Site for the Non-phosphorylated Substrate, and its Conformational Changes
J.Mol.Biol., 361, 2006
2L4M
DownloadVisualize
BU of 2l4m by Molmil
Solution structure of the Zbeta domain of human DAI and its binding modes to B- and Z-DNA
分子名称: Uncharacterized protein
著者Kim, K, Khayrutdinov, B.I, Jeon, Y.H, Kim, K.K.
登録日2010-10-08
公開日2011-04-13
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Solution structure of the Zbeta domain of human DNA-dependent activator of IFN-regulatory factors and its binding modes to B- and Z-DNA
Proc.Natl.Acad.Sci.USA, 2011
3E74
DownloadVisualize
BU of 3e74 by Molmil
Crystal structure of E. coli allantoinase with iron ions at the metal center
分子名称: Allantoinase, FE (III) ION
著者Kim, K.
登録日2008-08-17
公開日2009-02-24
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structure of metal-dependent allantoinase from Escherichia coli
J.Mol.Biol., 387, 2009
2Q37
DownloadVisualize
BU of 2q37 by Molmil
Crystal structure of OHCU decarboxylase in the presence of (S)-allantoin
分子名称: 1-[(4S)-2,5-DIOXOIMIDAZOLIDIN-4-YL]UREA, OHCU decarboxylase
著者Kim, K.
登録日2007-05-30
公開日2007-06-12
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural and functional basis for (s)-allantoin formation in the ureide pathway.
J.Biol.Chem., 282, 2007
7CMX
DownloadVisualize
BU of 7cmx by Molmil
Isocitrate lyase from Bacillus cereus ATCC 14579
分子名称: Isocitrate lyase
著者Kim, K, Ki, D, Lee, S.H.
登録日2020-07-29
公開日2021-08-04
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.79 Å)
主引用文献Isocitrate lyase from Bacillus cereus ATCC 14579
To Be Published
7CMY
DownloadVisualize
BU of 7cmy by Molmil
Isocitrate lyase from Bacillus cereus ATCC 14579 in complex with Magnessium ion, glyoxylate, and succinate
分子名称: GLYOXYLIC ACID, Isocitrate lyase, MAGNESIUM ION, ...
著者Kim, K, Ki, D, Lee, S.H.
登録日2020-07-29
公開日2021-08-04
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Isocitrate lyase from Bacillus cereus ATCC 14579 in complex with Magnessium ion, glyoxylate, and succinate
To Be Published
1VE8
DownloadVisualize
BU of 1ve8 by Molmil
X-Ray analyses of oligonucleotides containing 5-formylcytosine, suggesting a structural reason for codon-anticodon recognition of mitochondrial tRNA-Met; Part 1, d(CGCGAATT(f5C)GCG)
分子名称: 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(5FC)P*GP*CP*G)-3', SODIUM ION
著者Kimura, K, Ono, A, Watanabe, K, Takenaka, A.
登録日2004-03-29
公開日2005-06-28
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献X-Ray analyses of oligonucleotides containing 5-formylcytosine, suggest a structural reason for the codon-anticodon recognition of mitochondrial tRNA-Met
To be Published
7ECD
DownloadVisualize
BU of 7ecd by Molmil
Crystal structure of Tam41 from Firmicutes bacterium, complex with CTP-Mg
分子名称: BROMIDE ION, CYTIDINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
著者Kimura, K, Kawai, F, Kubota-Kawai, H, Watanabe, Y, Tamura, Y.
登録日2021-03-12
公開日2022-01-19
最終更新日2022-04-13
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Crystal structure of Tam41 cytidine diphosphate diacylglycerol synthase from a Firmicutes bacterium.
J.Biochem., 171, 2022
1V9H
DownloadVisualize
BU of 1v9h by Molmil
Crystal structure of the RNase MC1 mutant Y101A in complex with 5'-UMP
分子名称: Ribonuclease MC, SULFATE ION, URIDINE-5'-MONOPHOSPHATE
著者Kimura, K, Numata, T, Kakuta, Y, Kimura, M.
登録日2004-01-26
公開日2004-10-05
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Amino acids conserved at the C-terminal half of the ribonuclease t2 family contribute to protein stability of the enzymes
Biosci.Biotechnol.Biochem., 68, 2004
3ACH
DownloadVisualize
BU of 3ach by Molmil
Crystal Structure of Carbohydrate-Binding Module Family 28 from Clostridium josui Cel5A in complex with cellotetraose
分子名称: Beta-1,4-endoglucanase, CALCIUM ION, PHOSPHATE ION, ...
著者Tsukimoto, K, Takada, R, Araki, Y, Suzuki, K, Karita, S, Wakagi, T, Shoun, H, Watanabe, T, Fushinobu, S.
登録日2010-01-04
公開日2010-03-02
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Recognition of cellooligosaccharides by a family 28 carbohydrate-binding module.
Febs Lett., 584, 2010
3ACG
DownloadVisualize
BU of 3acg by Molmil
Crystal Structure of Carbohydrate-Binding Module Family 28 from Clostridium josui Cel5A in complex with cellobiose
分子名称: Beta-1,4-endoglucanase, CALCIUM ION, GLYCEROL, ...
著者Tsukimoto, K, Takada, R, Araki, Y, Suzuki, K, Karita, S, Wakagi, T, Shoun, H, Watanabe, T, Fushinobu, S.
登録日2010-01-04
公開日2010-03-02
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Recognition of cellooligosaccharides by a family 28 carbohydrate-binding module.
Febs Lett., 584, 2010
3ACI
DownloadVisualize
BU of 3aci by Molmil
Crystal Structure of Carbohydrate-Binding Module Family 28 from Clostridium josui Cel5A in complex with cellopentaose
分子名称: Beta-1,4-endoglucanase, CALCIUM ION, PHOSPHATE ION, ...
著者Tsukimoto, K, Takada, R, Araki, Y, Suzuki, K, Karita, S, Wakagi, T, Shoun, H, Watanabe, T, Fushinobu, S.
登録日2010-01-04
公開日2010-03-31
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Recognition of cellooligosaccharides by a family 28 carbohydrate-binding module.
Febs Lett., 584, 2010
3ACF
DownloadVisualize
BU of 3acf by Molmil
Crystal Structure of Carbohydrate-Binding Module Family 28 from Clostridium josui Cel5A in a ligand-free form
分子名称: Beta-1,4-endoglucanase, CALCIUM ION, SULFATE ION
著者Tsukimoto, K, Takada, R, Araki, Y, Suzuki, K, Karita, S, Wakagi, T, Shoun, H, Watanabe, T, Fushinobu, S.
登録日2010-01-04
公開日2010-03-02
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Recognition of cellooligosaccharides by a family 28 carbohydrate-binding module.
Febs Lett., 584, 2010
6WHA
DownloadVisualize
BU of 6wha by Molmil
HTR2A bound to 25-CN-NBOH in complex with a mini-Galpha-q protein, beta/gamma subunits and an active-state stabilizing single-chain variable fragment (scFv16) obtained by cryo-electron microscopy (cryoEM)
分子名称: 4-(2-{[(2-hydroxyphenyl)methyl]amino}ethyl)-2,5-dimethoxybenzonitrile, G subunit q (Gi2-mini-Gq chimeric), Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
著者Skiniotis, G, Roth, B, Kim, K, Panova, O.
登録日2020-04-07
公開日2020-09-23
実験手法ELECTRON MICROSCOPY (3.36 Å)
主引用文献Structure of a Hallucinogen-Activated Gq-Coupled 5-HT2A Serotonin Receptor
Cell(Cambridge,Mass.), 182, 2020
7YIT
DownloadVisualize
BU of 7yit by Molmil
Molecular mechanism of biased signaling at the kappa opioid receptor
分子名称: Kappa-type opioid receptor, Nanobody39, Soluble cytochrome b562, ...
著者Kim, K, Che, T.
登録日2022-07-18
公開日2023-04-12
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Molecular mechanism of biased signaling at the kappa opioid receptor.
Nat Commun, 14, 2023
5W7Y
DownloadVisualize
BU of 5w7y by Molmil
Crystal Structure of FHA domain of human APLF in complex with XRCC1 monophosphorylated mutated peptide
分子名称: Aprataxin and PNK-like factor, DNA repair protein XRCC1
著者Pedersen, L.C, Kim, K, London, R.E.
登録日2017-06-21
公開日2018-05-02
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Characterization of the APLF FHA-XRCC1 phosphopeptide interaction and its structural and functional implications.
Nucleic Acids Res., 45, 2017
5W7W
DownloadVisualize
BU of 5w7w by Molmil
Crystal Structure of FHA domain of human APLF
分子名称: Aprataxin and PNK-like factor, FORMIC ACID, SODIUM ION
著者Pedersen, L.C, Kim, K, London, R.E.
登録日2017-06-21
公開日2018-05-02
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.348 Å)
主引用文献Characterization of the APLF FHA-XRCC1 phosphopeptide interaction and its structural and functional implications.
Nucleic Acids Res., 45, 2017
5W7X
DownloadVisualize
BU of 5w7x by Molmil
Crystal Structure of FHA domain of human APLF in complex with XRCC1 bisphospho peptide
分子名称: Aprataxin and PNK-like factor, DNA repair protein XRCC1
著者Pedersen, L.C, Kim, K, London, R.E.
登録日2017-06-21
公開日2018-05-02
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.005 Å)
主引用文献Characterization of the APLF FHA-XRCC1 phosphopeptide interaction and its structural and functional implications.
Nucleic Acids Res., 45, 2017
7M6L
DownloadVisualize
BU of 7m6l by Molmil
High resolution structure of the membrane embedded skeletal muscle ryanodine receptor
分子名称: ADENOSINE-5'-TRIPHOSPHATE, CAFFEINE, CALCIUM ION, ...
著者Melville, Z, Kim, K, Clarke, O.B, Marks, A.R.
登録日2021-03-25
公開日2021-08-18
最終更新日2022-01-19
実験手法ELECTRON MICROSCOPY (3.98 Å)
主引用文献High-resolution structure of the membrane-embedded skeletal muscle ryanodine receptor.
Structure, 30, 2022
7M6A
DownloadVisualize
BU of 7m6a by Molmil
High resolution structure of the membrane embedded skeletal muscle ryanodine receptor
分子名称: ADENOSINE-5'-TRIPHOSPHATE, CAFFEINE, CALCIUM ION, ...
著者Melville, Z, Kim, K, Clarke, O.B, Marks, A.R.
登録日2021-03-25
公開日2021-09-08
最終更新日2022-01-19
実験手法ELECTRON MICROSCOPY (3.36 Å)
主引用文献High-resolution structure of the membrane-embedded skeletal muscle ryanodine receptor.
Structure, 30, 2022
7LML
DownloadVisualize
BU of 7lml by Molmil
Receptor for Advanced Glycation End Products VC1 domain in complex with 3-(3-(((3-(4-Carboxyphenoxy)benzyl)oxy)methyl)phenyl)-1H-indole-2-carboxylic acid
分子名称: 6-iodanyl-1~{H}-indole-2-carboxylic acid, ACETATE ION, Advanced glycosylation end product-specific receptor, ...
著者Salay, L.E, Kozlyuk, N, Gilston, B.A, Gogliotti, R.D, Christov, P.P, Kim, K, Ovee, M, Waterson, A.G, Chazin, W.J.
登録日2021-02-05
公開日2021-12-15
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献A fragment-based approach to discovery of Receptor for Advanced Glycation End products inhibitors.
Proteins, 89, 2021

219140

件を2024-05-01に公開中

PDB statisticsPDBj update infoContact PDBjnumon