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2LX1
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Major Conformation of the Internal Loop 5'GAGU/3'UGAG
分子名称: RNA (5'-R(*GP*AP*CP*GP*AP*GP*UP*GP*UP*CP*A)-3')
著者Kennedy, S.D, Turner, D.H.
登録日2012-08-12
公開日2012-11-21
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Novel conformation of an RNA structural switch.
Biochemistry, 51, 2012
2O83
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The Structure of Tandem GA RNA Pairs When Flanking Pairs are isoG-isoC Pairs
分子名称: 5'-R(*GP*GP*(IC)P*GP*AP*(IG)P*CP*CP*A)-3'
著者Kennedy, S.D, Turner, D.H.
登録日2006-12-11
公開日2007-07-10
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Stacking Effects on Local Structure in RNA: Changes in the Structure of Tandem GA Pairs when Flanking GC Pairs are Replaced by isoG-isoC Pairs
J.Phys.Chem.B, 111, 2007
7RQ5
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Hairpin near 3'-Splice Site of Influenza A Segment 7 Bound to 5-nt Oligonucleotide
分子名称: RNA (5'-D(*(MU5)P*(MLC)P*(MRC))-R(P*(LG)P*(MU3))-3'), RNA (5'-R(*AP*UP*CP*CP*AP*GP*AP*AP*AP*CP*GP*GP*AP*UP*GP*GP*AP*UP*A)-3')
著者Kauffmann, A.D, Kennedy, S.D, Turner, D.H.
登録日2021-08-05
公開日2022-01-19
最終更新日2022-03-30
実験手法SOLUTION NMR
主引用文献Nuclear magnetic resonance reveals a two hairpin equilibrium near the 3'-splice site of influenza A segment 7 mRNA that can be shifted by oligonucleotides.
Rna, 28, 2022
6N8I
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BU of 6n8i by Molmil
RNA Duplex containing the internal loop 5'-UUCG/3'-GCUU
分子名称: RNA (5'-R(*CP*GP*CP*AP*UP*UP*CP*GP*AP*CP*GP*C)-3'), RNA (5'-R(*GP*CP*GP*UP*UP*UP*CP*GP*UP*GP*CP*G)-3')
著者Berger, K.D, Kennedy, S.D, Turner, D.H.
登録日2018-11-29
公開日2019-02-13
最終更新日2020-01-01
実験手法SOLUTION NMR
主引用文献Nuclear Magnetic Resonance Reveals That GU Base Pairs Flanking Internal Loops Can Adopt Diverse Structures.
Biochemistry, 58, 2019
6N8F
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BU of 6n8f by Molmil
RNA Duplex containing the internal loop 5'-GCUU/3'-UUCG
分子名称: RNA (5'-R(*CP*GP*CP*AP*GP*CP*UP*UP*AP*CP*GP*C)-3'), RNA (5'-R(*GP*CP*GP*UP*GP*CP*UP*UP*UP*GP*CP*G)-3')
著者Berger, K.D, Kennedy, S.D, Turner, D.H.
登録日2018-11-29
公開日2019-02-13
最終更新日2020-01-01
実験手法SOLUTION NMR
主引用文献Nuclear Magnetic Resonance Reveals That GU Base Pairs Flanking Internal Loops Can Adopt Diverse Structures.
Biochemistry, 58, 2019
1TUT
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BU of 1tut by Molmil
J4/5 Loop from the Candida albicans and Candida dubliniensis Group I Introns
分子名称: 5'-R(*GP*AP*GP*GP*AP*AP*GP*GP*CP*GP*A)-3', 5'-R(*UP*CP*GP*UP*UP*AP*AP*UP*CP*UP*C)-3'
著者Znosko, B.M, Kennedy, S.D, Wille, P.C, Krugh, T.R, Turner, D.H.
登録日2004-06-25
公開日2004-12-28
最終更新日2022-03-02
実験手法SOLUTION NMR
主引用文献Structural Features and Thermodynamics of the J4/5 Loop from the Candida albicans and Candida dubliniensis Group I Introns.
Biochemistry, 43, 2004
1XV0
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BU of 1xv0 by Molmil
Solution NMR structure of RNA internal loop with three consecutive sheared GA pairs in 5'GGUGGAGGCU/3'PCCGAAGCCG
分子名称: 5'-R(*GP*CP*CP*GP*AP*AP*GP*CP*CP*(P5P)-3', 5'-R(*GP*GP*UP*GP*GP*AP*GP*GP*CP*U)-3'
著者Chen, G, Znosko, B.M, Kennedy, S.D, Krugh, T.R, Turner, D.H.
登録日2004-10-26
公開日2004-11-09
最終更新日2022-03-02
実験手法SOLUTION NMR
主引用文献Solution Structure of an RNA Internal Loop with Three Consecutive Sheared GA Pairs
Biochemistry, 44, 2005
6N8H
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BU of 6n8h by Molmil
RNA Duplex containing the internal loop 5'-GCAU/3'-UACG
分子名称: RNA (5'-R(*CP*GP*GP*GP*CP*AP*UP*CP*CP*G)-3')
著者Berger, K.D, Kennedy, S.D, Turner, D.H.
登録日2018-11-29
公開日2019-02-13
最終更新日2020-01-01
実験手法SOLUTION NMR
主引用文献Nuclear Magnetic Resonance Reveals That GU Base Pairs Flanking Internal Loops Can Adopt Diverse Structures.
Biochemistry, 58, 2019
2DD1
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Three consecutive sheared GA pairs in 5'GGUGGAGGCU/3'PCCAAAGCCG
分子名称: 5'-R(*GP*CP*CP*GP*AP*AP*AP*CP*CP*(P5P))-3', 5'-R(*GP*GP*UP*GP*GP*AP*GP*GP*CP*U)-3'
著者Chen, G, Kennedy, S.D, Krugh, T.R, Turner, D.H.
登録日2006-01-19
公開日2006-06-13
最終更新日2022-03-09
実験手法SOLUTION NMR
主引用文献An Alternating Sheared AA Pair and Elements of Stability for a Single Sheared Purine-Purine Pair Flanked by Sheared GA Pairs in RNA
Biochemistry, 45, 2006
2DD3
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An alternating sheared AA pair in 5'GGUGAAGGCU/3'PCCGAAGCCG: II. The minor conformation with A6/A5/A16 stack
分子名称: 5'-R(*GP*CP*CP*GP*AP*AP*GP*CP*CP*(P5P))-3', 5'-R(*GP*GP*UP*GP*AP*AP*GP*GP*CP*U)-3'
著者Chen, G, Kennedy, S.D, Krugh, T.R, Turner, D.H.
登録日2006-01-19
公開日2006-06-13
最終更新日2022-03-09
実験手法SOLUTION NMR
主引用文献An Alternating Sheared AA Pair and Elements of Stability for a Single Sheared Purine-Purine Pair Flanked by Sheared GA Pairs in RNA
Biochemistry, 45, 2006
2DD2
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An alternating sheared AA pair in 5'GGUGAAGGCU/3'PCCGAAGCCG: I. The major conformation with A6/A15/A16 stack
分子名称: 5'-R(*GP*CP*CP*GP*AP*AP*GP*CP*CP*(P5P))-3', 5'-R(*GP*GP*UP*GP*AP*AP*GP*GP*CP*U)-3'
著者Chen, G, Kennedy, S.D, Krugh, T.R, Turner, D.H.
登録日2006-01-19
公開日2006-06-13
最終更新日2022-03-09
実験手法SOLUTION NMR
主引用文献An Alternating Sheared AA Pair and Elements of Stability for a Single Sheared Purine-Purine Pair Flanked by Sheared GA Pairs in RNA
Biochemistry, 45, 2006
2L8F
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Structure of a 4X4 Nucleotide RNA Internal Loop from an R2 Retrotransposon
分子名称: RNA (5'-R(*CP*GP*GP*AP*GP*GP*AP*CP*AP*CP*U)-3'), RNA (5'-R(*GP*UP*GP*AP*AP*GP*CP*CP*CP*GP*U)-3')
著者Lerman, Y, Kennedy, S.D, Turner, D.H.
登録日2011-01-11
公開日2011-08-31
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献NMR structure of a 4 x 4 nucleotide RNA internal loop from an R2 retrotransposon: Identification of a three purine-purine sheared pair motif and comparison to MC-SYM predictions.
Rna, 17, 2011
2MXK
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BU of 2mxk by Molmil
Structural features of a 3' splice site influenza A: 19-nt duplex
分子名称: RNA (5'-R(*GP*CP*AP*GP*GP*CP*CP*CP*A)-3'), RNA (5'-R(*UP*GP*GP*GP*AP*GP*UP*GP*CP*A)-3')
著者Turner, D.H, Kennedy, S.D, Chen, J.L.
登録日2015-01-06
公開日2015-05-06
最終更新日2015-06-17
実験手法SOLUTION NMR
主引用文献Structural features of a 3' splice site in influenza a.
Biochemistry, 54, 2015
2MXJ
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BU of 2mxj by Molmil
Structural features of a 3' splice site influenza A: 11-nt hairpin
分子名称: RNA_(11-MER)
著者Turner, D.H, Kennedy, S.D, Chen, J.L.
登録日2015-01-06
公開日2015-05-06
最終更新日2015-06-17
実験手法SOLUTION NMR
主引用文献Structural features of a 3' splice site in influenza a.
Biochemistry, 54, 2015
2MXL
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BU of 2mxl by Molmil
Structural features of a 3' splice site in influenza A: 39-nt hairpin
分子名称: RNA (39-MER)
著者Turner, D.H, Kennedy, S.D, Chen, J.L.
登録日2015-01-06
公開日2015-05-06
最終更新日2015-06-17
実験手法SOLUTION NMR
主引用文献Structural features of a 3' splice site in influenza a.
Biochemistry, 54, 2015
5V2R
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BU of 5v2r by Molmil
Structure of a GA Rich 8x8 Nucleotide RNA Internal Loop
分子名称: RNA (5'-R(*CP*CP*AP*GP*AP*AP*AP*CP*GP*GP*AP*UP*GP*GP*A)-3')
著者Kauffmann, A.D, Kennedy, S.D, Turner, D.H.
登録日2017-03-06
公開日2017-07-26
最終更新日2020-01-01
実験手法SOLUTION NMR
主引用文献Nuclear Magnetic Resonance Structure of an 8 8 Nucleotide RNA Internal Loop Flanked on Each Side by Three Watson-Crick Pairs and Comparison to Three-Dimensional Predictions.
Biochemistry, 56, 2017
2KY0
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BU of 2ky0 by Molmil
The Structure of RNA Internal Loops with Tandem AG Pairs: 5'GAGC/3'CGAG
分子名称: 5'-R(*GP*AP*CP*GP*AP*GP*CP*GP*UP*CP*A)-3'
著者Hammond, N.B, Kennedy, S.D, Turner, D.H.
登録日2010-05-13
公開日2010-06-02
最終更新日2022-03-16
実験手法SOLUTION NMR
主引用文献RNA internal loops with tandem AG pairs: the structure of the 5'GAGU/3'UGAG loop can be dramatically different from others, including 5'AAGU/3'UGAA.
Biochemistry, 49, 2010
2KQ6
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BU of 2kq6 by Molmil
The structure of the EF-hand domain of polycystin-2 suggests a mechanism for Ca2+-dependent regulation of polycystin-2 channel activity
分子名称: Polycystin-2
著者Petri, E.T, Celic, A, Kennedy, S.D, Ehrlich, B.E, Boggon, T.J, Hodsdon, M.E.
登録日2009-10-28
公開日2010-05-12
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Structure of the EF-hand domain of polycystin-2 suggests a mechanism for Ca2+-dependent regulation of polycystin-2 channel activity.
Proc.Natl.Acad.Sci.USA, 107, 2010
2KY1
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The Structure of RNA Internal Loops with Tandem AG Pairs: 5'UAGA/3'AGAU
分子名称: 5'-R(*GP*AP*CP*UP*AP*GP*AP*GP*UP*CP*A)-3'
著者Hammond, N.B, Kennedy, S.D, Turner, D.H.
登録日2010-05-13
公開日2010-06-02
最終更新日2022-03-16
実験手法SOLUTION NMR
主引用文献RNA internal loops with tandem AG pairs: the structure of the 5'GAGU/3'UGAG loop can be dramatically different from others, including 5'AAGU/3'UGAA.
Biochemistry, 49, 2010
2KXZ
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BU of 2kxz by Molmil
The Structure of RNA Internal Loops with Tandem AG Pairs: 5'AAGU/3'UGAA
分子名称: 5'-R(*GP*AP*CP*AP*AP*GP*UP*GP*UP*CP*A)-3'
著者Hammond, N.B, Kennedy, S.D, Turner, D.H.
登録日2010-05-13
公開日2010-06-02
最終更新日2022-03-16
実験手法SOLUTION NMR
主引用文献RNA internal loops with tandem AG pairs: the structure of the 5'GAGU/3'UGAG loop can be dramatically different from others, including 5'AAGU/3'UGAA.
Biochemistry, 49, 2010
2KY2
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The Structure of RNA Internal Loops with Tandem AG Pairs: 5'UAGG/3'GGAU
分子名称: 5'-R(*GP*GP*UP*AP*GP*GP*CP*CP*A)-3'
著者Hammond, N.B, Kennedy, S.D, Turner, D.H.
登録日2010-05-13
公開日2010-06-02
最終更新日2022-03-16
実験手法SOLUTION NMR
主引用文献RNA internal loops with tandem AG pairs: the structure of the 5'GAGU/3'UGAG loop can be dramatically different from others, including 5'AAGU/3'UGAA.
Biochemistry, 49, 2010
4FXX
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Structure of SF1 coiled-coil domain
分子名称: IMIDAZOLE, MALONATE ION, Splicing factor 1
著者Gupta, A, Bauer, W.J, Wang, W, Kielkopf, C.L.
登録日2012-07-03
公開日2013-01-16
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.4801 Å)
主引用文献Structure of Phosphorylated SF1 Bound to U2AF(65) in an Essential Splicing Factor Complex.
Structure, 21, 2013
4FXW
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Structure of phosphorylated SF1 complex with U2AF65-UHM domain
分子名称: SULFATE ION, Splicing factor 1, Splicing factor U2AF 65 kDa subunit
著者Wang, W, Bauer, W.J, Wedekind, J.E, Kielkopf, C.L.
登録日2012-07-03
公開日2013-01-16
最終更新日2017-11-15
実験手法X-RAY DIFFRACTION (2.29 Å)
主引用文献Structure of Phosphorylated SF1 Bound to U2AF(65) in an Essential Splicing Factor Complex.
Structure, 21, 2013
2O81
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The Structure of Tandem GA RNA Pairs When Flanking Pairs are isoG-isoC Pairs
分子名称: 5'-R(*GP*CP*(IG)P*GP*AP*(IC)P*GP*CP*A)-3'
著者Chen, G, Turner, D.H.
登録日2006-12-11
公開日2007-07-10
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Stacking Effects on Local Structure in RNA: Changes in the Structure of Tandem GA Pairs when Flanking GC Pairs are Replaced by isoG-isoC Pairs
J.Phys.Chem.B, 111, 2007
5VAJ
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BhRNase H - amide-RNA/DNA complex
分子名称: ACETATE ION, DNA (5'-D(*GP*AP*AP*TP*CP*AP*GP*GP*TP*GP*TP*C)-3'), GLYCEROL, ...
著者Pallan, P.S, Egli, M.
登録日2017-03-27
公開日2017-09-13
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Amide linkages mimic phosphates in RNA interactions with proteins and are well tolerated in the guide strand of short interfering RNAs.
Nucleic Acids Res., 45, 2017

 

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