1GD5
 
 | | SOLUTION STRUCTURE OF THE PX DOMAIN FROM HUMAN P47PHOX NADPH OXIDASE | | 分子名称: | NEUTROPHIL CYTOSOL FACTOR 1 | | 著者 | Hiroaki, H, Ago, T, Ito, T, Sumimoto, H, Kohda, D. | | 登録日 | 2000-09-14 | | 公開日 | 2001-06-13 | | 最終更新日 | 2023-12-27 | | 実験手法 | SOLUTION NMR | | 主引用文献 | Solution structure of the PX domain, a target of the SH3 domain.
Nat.Struct.Biol., 8, 2001
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2RRM
 | | Interplay between phosphatidyl-inositol-phosphates and claudins upon binding to the 1st PDZ domain of zonula occludens 1 | | 分子名称: | Tight junction protein ZO-1 | | 著者 | Hiroaki, H, Satomura, K, Goda, N, Umetsu, Y, Taniguchi, R, Ikegami, T, Furuse, M. | | 登録日 | 2011-01-06 | | 公開日 | 2011-05-25 | | 最終更新日 | 2024-05-15 | | 実験手法 | SOLUTION NMR | | 主引用文献 | 1H, 13C, and 15N resonance assignment of the first PDZ domain of mouse ZO-1
Biomol.Nmr Assign., 5, 2011
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413D
 | | A'-FORM RNA DOUBLE HELIX IN THE SINGLE CRYSTAL STRUCTURE OF R(UGAGCUUCGGCUC) | | 分子名称: | RNA (5'-R(*UP*GP*AP*GP*CP*UP*UP*CP*GP*GP*CP*UP*C)-3') | | 著者 | Tanaka, Y, Fujii, S, Hiroaki, H, Sakata, T, Tanaka, T, Uesugi, S, Tomita, K.-I, Kyogoku, Y. | | 登録日 | 1998-07-10 | | 公開日 | 1998-07-10 | | 最終更新日 | 2024-02-28 | | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | | 主引用文献 | A'-form RNA double helix in the single crystal structure of r(UGAGCUUCGGCUC).
Nucleic Acids Res., 27, 1999
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1UEL
 | | Solution structure of ubiquitin-like domain of hHR23B complexed with ubiquitin-interacting motif of proteasome subunit S5a | | 分子名称: | 26S proteasome non-ATPase regulatory subunit 4, UV excision repair protein RAD23 homolog B | | 著者 | Fujiwara, K, Tenno, T, Jee, J.G, Sugasawa, K, Ohki, I, Kojima, C, Tochio, H, Hiroaki, H, Hanaoka, H, Shirakawa, M, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | 登録日 | 2003-05-19 | | 公開日 | 2004-02-10 | | 最終更新日 | 2023-12-27 | | 実験手法 | SOLUTION NMR | | 主引用文献 | Structure of the Ubiquitin-interacting Motif of S5a Bound to the Ubiquitin-like Domain of HR23B
J.Biol.Chem., 279, 2004
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3VQF
 | | Crystal Structure Analysis of the PDZ Domain Derived from the Tight Junction Regulating Protein | | 分子名称: | E3 ubiquitin-protein ligase LNX | | 著者 | Akiyoshi, Y, Hamada, D, Goda, N, Tenno, T, Narita, H, Nakagawa, A, Furuse, M, Suzuki, M, Hiroaki, H. | | 登録日 | 2012-03-22 | | 公開日 | 2013-03-27 | | 最終更新日 | 2023-11-08 | | 実験手法 | X-RAY DIFFRACTION (1.199 Å) | | 主引用文献 | Structural basis for down regulation of tight junction by PDZ-domain containing E3-Ubiquitin ligase
To be Published
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3VQG
 | | Crystal Structure Analysis of the PDZ Domain Derived from the Tight Junction Regulating Protein | | 分子名称: | C-terminal peptide from Immunoglobulin superfamily member 5, E3 ubiquitin-protein ligase LNX, SULFATE ION | | 著者 | Akiyoshi, Y, Hamada, D, Goda, N, Tenno, T, Narita, H, Nakagawa, A, Furuse, M, Suzuki, M, Hiroaki, H. | | 登録日 | 2012-03-23 | | 公開日 | 2013-03-27 | | 最終更新日 | 2023-11-08 | | 実験手法 | X-RAY DIFFRACTION (1.35 Å) | | 主引用文献 | Structural basis for down regulation of tight junction by PDZ-domain containing E3-Ubiquitin ligase
To be Published
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1WYW
 | | Crystal Structure of SUMO1-conjugated thymine DNA glycosylase | | 分子名称: | CHLORIDE ION, G/T mismatch-specific thymine DNA glycosylase, MAGNESIUM ION, ... | | 著者 | Baba, D, Maita, N, Jee, J.G, Uchimura, Y, Saitoh, H, Sugasawa, K, Hanaoka, F, Tochio, H, Hiroaki, H, Shirakawa, M. | | 登録日 | 2005-02-17 | | 公開日 | 2005-06-21 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | | 主引用文献 | Crystal structure of thymine DNA glycosylase conjugated to SUMO-1.
Nature, 435, 2005
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1WR1
 | | The complex structure of Dsk2p UBA with ubiquitin | | 分子名称: | Ubiquitin, Ubiquitin-like protein DSK2 | | 著者 | Ohno, A, Jee, J.G, Fujiwara, K, Tenno, T, Goda, N, Tochio, H, Hiroaki, H, kobayashi, H, Shirakawa, M. | | 登録日 | 2004-10-08 | | 公開日 | 2005-04-19 | | 最終更新日 | 2023-09-27 | | 実験手法 | SOLUTION NMR | | 主引用文献 | Structure of the UBA domain of Dsk2p in complex with ubiquitin molecular determinants for ubiquitin recognition.
Structure, 13, 2005
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1WR0
 | | Structural characterization of the MIT domain from human Vps4b | | 分子名称: | SKD1 protein | | 著者 | Takasu, H, Jee, J.G, Ohno, A, Goda, N, Fujiwara, K, Tochio, H, Shirakawa, M, Hiroaki, H, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | 登録日 | 2004-10-07 | | 公開日 | 2005-08-02 | | 最終更新日 | 2024-05-29 | | 実験手法 | SOLUTION NMR | | 主引用文献 | Structural characterization of the MIT domain from human Vps4b
Biochem.Biophys.Res.Commun., 334, 2005
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2Z5V
 | | Solution structure of the TIR domain of human MyD88 | | 分子名称: | Myeloid differentiation primary response protein MyD88 | | 著者 | Ohnishi, H, Tochio, H, Hiroaki, H, Kondo, N, Kato, Z, Shirakawa, M. | | 登録日 | 2007-07-19 | | 公開日 | 2008-08-05 | | 最終更新日 | 2024-05-29 | | 実験手法 | SOLUTION NMR | | 主引用文献 | Structural basis for the multiple interactions of the MyD88 TIR domain in TLR4 signaling.
Proc.Natl.Acad.Sci.USA, 2009
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3AXA
 | | Crystal structure of afadin PDZ domain in complex with the C-terminal peptide from nectin-3 | | 分子名称: | Afadin, Nectin-3 | | 著者 | Fujiwara, Y, Goda, N, Narita, H, Satomura, K, Nakagawa, A, Sakisaka, T, Suzuki, M, Hiroaki, H. | | 登録日 | 2011-03-31 | | 公開日 | 2012-04-25 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (2.78 Å) | | 主引用文献 | Crystal structure of afadin PDZ domain-nectin-3 complex shows the structural plasticity of the ligand-binding site.
Protein Sci., 24, 2015
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6LCB
 | | Crystal structure of human Dishevelled1 PDZ domain with its inhibitor NPL3009 | | 分子名称: | 2-[[3-[(2E)-2-[1,3-bis(oxidanylidene)-1-phenyl-butan-2-ylidene]hydrazinyl]phenyl]sulfonylamino]benzoic acid, SULFATE ION, Segment polarity protein dishevelled homolog DVL-1 | | 著者 | Yasukochi, S, Numoto, N, Tenno, N, Tenno, T, Ito, N, Hiroaki, H. | | 登録日 | 2019-11-18 | | 公開日 | 2020-11-25 | | 最終更新日 | 2023-11-22 | | 実験手法 | X-RAY DIFFRACTION (1.4 Å) | | 主引用文献 | Crystal structure of human Dishevelled1 PDZ domain with its inhibitor NPL3009
To Be Published
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6LCA
 | | Crystal structure of human Dishevelled1 PDZ domain homotrimer | | 分子名称: | SULFATE ION, Segment polarity protein dishevelled homolog DVL-1 | | 著者 | Yasukochi, S, Numoto, N, Tenno, N, Tenno, T, Ito, N, Hiroaki, H. | | 登録日 | 2019-11-18 | | 公開日 | 2020-11-25 | | 最終更新日 | 2023-11-22 | | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | | 主引用文献 | Crystal structure of human Dishevelled1 PDZ domain homotrimer
To Be Published
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1WLF
 | | Structure of the N-terminal domain of PEX1 AAA-ATPase: Characterization of a putative adaptor-binding domain | | 分子名称: | Peroxisome biogenesis factor 1, SULFATE ION | | 著者 | Shiozawa, K, Maita, N, Tomii, K, Seto, A, Goda, N, Tochio, H, Akiyama, Y, Shimizu, T, Shirakawa, M, Hiroaki, H. | | 登録日 | 2004-06-25 | | 公開日 | 2004-09-07 | | 最終更新日 | 2024-03-13 | | 実験手法 | X-RAY DIFFRACTION (2.05 Å) | | 主引用文献 | Structure of the N-terminal Domain of PEX1 AAA-ATPase: CHARACTERIZATION OF A PUTATIVE ADAPTOR-BINDING DOMAIN
J.Biol.Chem., 279, 2004
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2RQQ
 | | Structure of C-terminal region of Cdt1 | | 分子名称: | DNA replication factor Cdt1 | | 著者 | Jee, J.G, Mizuno, T, Kamada, K, Tochio, H, Hiroaki, H, Hanaoka, F, Shirakawa, M. | | 登録日 | 2009-10-14 | | 公開日 | 2010-03-23 | | 最終更新日 | 2024-05-29 | | 実験手法 | SOLUTION NMR | | 主引用文献 | Structure and mutagenesis studies of the C-terminal region of licensing factor Cdt1 enable the identification of key residues for binding to replicative helicase Mcm proteins
J.Biol.Chem., 285, 2010
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2RPA
 | | The solution structure of N-terminal domain of microtubule severing enzyme | | 分子名称: | Katanin p60 ATPase-containing subunit A1 | | 著者 | Iwaya, N, Kuwahara, Y, Unzai, S, Nagata, T, Tomii, K, Goda, N, Tochio, H, Shirakawa, M, Hiroaki, H. | | 登録日 | 2008-05-13 | | 公開日 | 2009-05-26 | | 最終更新日 | 2024-05-29 | | 実験手法 | SOLUTION NMR | | 主引用文献 | A common substrate recognition mode conserved between katanin P60 and VPS4 governs microtubule severing and membrane skeleton reorganization
J.Biol.Chem., 285, 2010
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2D07
 | | Crystal Structure of SUMO-3-modified Thymine-DNA Glycosylase | | 分子名称: | G/T mismatch-specific thymine DNA glycosylase, Ubiquitin-like protein SMT3B | | 著者 | Baba, D, Maita, N, Jee, J.G, Uchimura, Y, Saitoh, H, Sugasawa, K, Hanaoka, F, Tochio, H, Hiroaki, H, Shirakawa, M. | | 登録日 | 2005-07-26 | | 公開日 | 2006-06-06 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | | 主引用文献 | Crystal Structure of SUMO-3-modified Thymine-DNA Glycosylase
J.Mol.Biol., 359, 2006
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2D2P
 | | The solution structure of micelle-bound peptide | | 分子名称: | Pituitary adenylate cyclase activating polypeptide-38 | | 著者 | Tateishi, Y, Jee, J.G, Inooka, H, Tochio, H, Hiroaki, H, Shirakawa, M. | | 登録日 | 2005-09-14 | | 公開日 | 2006-09-26 | | 最終更新日 | 2022-03-09 | | 実験手法 | SOLUTION NMR | | 主引用文献 | The solution structure of micelle-bound peptide
To be Published
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2EXD
 | | The solution structure of the C-terminal domain of a nfeD homolog from Pyrococcus horikoshii | | 分子名称: | nfeD short homolog | | 著者 | Kuwahara, Y, Ohno, A, Morii, T, Tochio, H, Shirakawa, M, Hiroaki, H. | | 登録日 | 2005-11-08 | | 公開日 | 2006-12-12 | | 最終更新日 | 2024-05-01 | | 実験手法 | SOLUTION NMR | | 主引用文献 | The solution structure of the C-terminal domain of NfeD reveals a novel membrane-anchored OB-fold.
Protein Sci., 17, 2008
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2RRE
 | | Structure and function of the N-terminal nucleolin binding domain of nuclear valocine containing protein like 2 (NVL2) harboring a nucleolar localization signal | | 分子名称: | Putative uncharacterized protein | | 著者 | Fujiwara, Y, Fujiwara, K, Goda, N, Iwaya, N, Tenno, T, Shirakawa, M, Hiroaki, H. | | 登録日 | 2010-08-03 | | 公開日 | 2011-04-06 | | 最終更新日 | 2024-05-15 | | 実験手法 | SOLUTION NMR | | 主引用文献 | Structure and function of the N-terminal nucleolin binding domain of nuclear valosin-containing protein-like 2 (NVL2) harboring a nucleolar localization signal
J.Biol.Chem., 286, 2011
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7WH3
 | | Solution structure of human stomatin SPFH domain in a phosphate buffer | | 分子名称: | Stomatin | | 著者 | Kataoka, K, Tenno, T, Goda, N, Hibino, E, Hiroaki, H. | | 登録日 | 2021-12-29 | | 公開日 | 2022-06-08 | | 最終更新日 | 2024-05-15 | | 実験手法 | SOLUTION NMR | | 主引用文献 | A cryptic phosphate-binding pocket on the SPFH domain of human stomatin that regulates a novel fibril-like self-assembly
Curr Res Struct Biol, 4, 2022
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2RRI
 | | NMR structure of vasoactive intestinal peptide in DPC Micelle | | 分子名称: | Vasoactive intestinal peptide | | 著者 | Umetsu, Y, Tenno, T, Goda, N, Shirakawa, M, Ikegami, T, Hiroaki, H. | | 登録日 | 2010-12-21 | | 公開日 | 2011-04-06 | | 最終更新日 | 2024-05-15 | | 実験手法 | SOLUTION NMR | | 主引用文献 | Structural difference of vasoactive intestinal peptide in two distinct membrane-mimicking environments
Biochim.Biophys.Acta, 1814, 2011
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2RPB
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2RRH
 | | NMR structure of vasoactive intestinal peptide in Methanol | | 分子名称: | VIP peptides | | 著者 | Umetsu, Y, Tenno, T, Goda, N, Ikegami, T, Hiroaki, H. | | 登録日 | 2010-11-12 | | 公開日 | 2011-04-06 | | 最終更新日 | 2024-05-01 | | 実験手法 | SOLUTION NMR | | 主引用文献 | Structural difference of vasoactive intestinal peptide in two distinct membrane-mimicking environments.
Biochim.Biophys.Acta, 1814, 2011
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3L3F
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