2DFB
| Xylanase II from Tricoderma reesei at 100K | Descriptor: | Endo-1,4-beta-xylanase 2, IODIDE ION, SULFATE ION | Authors: | Harata, K, Akiba, T. | Deposit date: | 2006-02-28 | Release date: | 2006-07-11 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.11 Å) | Cite: | Structure of an orthorhombic form of xylanase II from Trichoderma reesei and analysis of thermal displacement. ACTA CRYSTALLOGR.,SECT.D, 62, 2006
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1TAY
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1TBY
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1TDY
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1TCY
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1D6Q
| HUMAN LYSOZYME E102 MUTANT LABELLED WITH 2',3'-EPOXYPROPYL GLYCOSIDE OF N-ACETYLLACTOSAMINE | Descriptor: | GLYCEROL, LYSOZYME, beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | Authors: | Muraki, M, Harata, K, Sugita, N, Sato, K. | Deposit date: | 1999-10-15 | Release date: | 2000-01-21 | Last modified: | 2021-11-03 | Method: | X-RAY DIFFRACTION (1.96 Å) | Cite: | Protein-carbohydrate interactions in human lysozyme probed by combining site-directed mutagenesis and affinity labeling. Biochemistry, 39, 2000
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1D6P
| HUMAN LYSOZYME L63 MUTANT LABELLED WITH 2',3'-EPOXYPROPYL N,N'-DIACETYLCHITOBIOSE | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, LYSOZYME | Authors: | Muraki, M, Harata, K, Sugita, N, Sato, K. | Deposit date: | 1999-10-15 | Release date: | 2000-01-21 | Last modified: | 2021-11-03 | Method: | X-RAY DIFFRACTION (2.23 Å) | Cite: | Protein-carbohydrate interactions in human lysozyme probed by combining site-directed mutagenesis and affinity labeling. Biochemistry, 39, 2000
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5AWL
| CRYSTAL STRUCTURE OF A MUTANT OF CHIGNOLIN, CLN025 | Descriptor: | A mutant of Chignolin, CLN025 | Authors: | Akiba, T, Ishimura, M, Odahara, T, Harata, K, Honda, S. | Deposit date: | 2015-07-05 | Release date: | 2015-08-12 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (1.11 Å) | Cite: | Crystal structure of a ten-amino acid protein J.Am.Chem.Soc., 130, 2008
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1REY
| HUMAN LYSOZYME-N,N'-DIACETYLCHITOBIOSE COMPLEX | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, LYSOZYME | Authors: | Muraki, M, Harata, K, Sugita, N, Sato, K. | Deposit date: | 1996-08-21 | Release date: | 1997-02-12 | Last modified: | 2023-08-09 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Origin of carbohydrate recognition specificity of human lysozyme revealed by affinity labeling. Biochemistry, 35, 1996
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1REZ
| HUMAN LYSOZYME-N-ACETYLLACTOSAMINE COMPLEX | Descriptor: | GLYCEROL, LYSOZYME, beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | Authors: | Muraki, M, Harata, K, Sugita, N, Sato, K. | Deposit date: | 1996-08-21 | Release date: | 1997-02-12 | Last modified: | 2023-08-09 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Origin of carbohydrate recognition specificity of human lysozyme revealed by affinity labeling. Biochemistry, 35, 1996
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1REX
| NATIVE HUMAN LYSOZYME | Descriptor: | LYSOZYME | Authors: | Muraki, M, Harata, K. | Deposit date: | 1996-08-21 | Release date: | 1997-02-12 | Last modified: | 2023-08-09 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | Origin of carbohydrate recognition specificity of human lysozyme revealed by affinity labeling. Biochemistry, 35, 1996
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1RE2
| HUMAN LYSOZYME LABELLED WITH TWO 2',3'-EPOXYPROPYL BETA-GLYCOSIDE OF N-ACETYLLACTOSAMINE | Descriptor: | GLYCEROL, PROTEIN (LYSOZYME), beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | Authors: | Muraki, M, Harata, K, Sugita, N, Sato, K. | Deposit date: | 1998-11-05 | Release date: | 1999-05-05 | Last modified: | 2023-08-02 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Dual affinity labeling of the active site of human lysozyme with an N-acetyllactosamine derivative: first ligand assisted recognition of the second ligand. Biochemistry, 38, 1999
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1REM
| HUMAN LYSOZYME WITH MAN-B1,4-GLCNAC COVALENTLY ATTACHED TO ASP53 | Descriptor: | LYSOZYME, NITRATE ION, R-1,2-PROPANEDIOL, ... | Authors: | Muraki, M, Harata, K, Sugita, N, Sato, K. | Deposit date: | 1998-01-14 | Release date: | 1998-07-15 | Last modified: | 2023-08-09 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | X-ray structure of human lysozyme labelled with 2',3'-epoxypropyl beta-glycoside of man-beta1,4-GlcNAc. Structural change and recognition specificity at subsite B. Acta Crystallogr.,Sect.D, 54, 1998
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2O4A
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2O49
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1K7U
| Crystal Structure Analysis of crosslinked-WGA3/GlcNAcbeta1,4GlcNAc complex | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, agglutinin isolectin 3 | Authors: | Muraki, M, Ishimura, M, Harata, K. | Deposit date: | 2001-10-22 | Release date: | 2002-04-03 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Interactions of wheat-germ agglutinin with GlcNAc beta 1,6Gal sequence Biochim.Biophys.Acta, 1569, 2002
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1K7V
| Crystal Structure Analysis of crosslinked-WGA3/GlcNAcbeta1,6Galbeta1,4Glc | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-6)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose, agglutinin isolectin 3 | Authors: | Muraki, M, Ishimura, M, Harata, K. | Deposit date: | 2001-10-22 | Release date: | 2002-04-03 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Interactions of wheat-germ agglutinin with GlcNAc beta 1,6Gal sequence Biochim.Biophys.Acta, 1569, 2002
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1K7T
| Crystal Structure Analysis of crosslinked-WGA3/GlcNAcbeta1,6Gal complex | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-6)-beta-D-galactopyranose, agglutinin isolectin 3 | Authors: | Muraki, M, Ishimura, M, Harata, K. | Deposit date: | 2001-10-22 | Release date: | 2002-04-03 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Interactions of wheat-germ agglutinin with GlcNAc beta 1,6Gal sequence Biochim.Biophys.Acta, 1569, 2002
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1D7F
| CRYSTAL STRUCTURE OF ASPARAGINE 233-REPLACED CYCLODEXTRIN GLUCANOTRANSFERASE FROM ALKALOPHILIC BACILLUS SP. 1011 DETERMINED AT 1.9 A RESOLUTION | Descriptor: | CALCIUM ION, CYCLODEXTRIN GLUCANOTRANSFERASE | Authors: | Ishii, N, Haga, K, Yamane, K, Harata, K. | Deposit date: | 1999-10-18 | Release date: | 2000-03-17 | Last modified: | 2021-11-03 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Crystal structure of asparagine 233-replaced cyclodextrin glucanotransferase from alkalophilic Bacillus sp. 1011 determined at 1.9 A resolution. J.Mol.Recog., 13, 2000
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1DED
| CRYSTAL STRUCTURE OF ALKALOPHILIC ASPARAGINE 233-REPLACED CYCLODEXTRIN GLUCANOTRANSFERASE COMPLEXED WITH AN INHIBITOR, ACARBOSE, AT 2.0 A RESOLUTION | Descriptor: | 4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-beta-D-glucopyranose, CALCIUM ION, CYCLODEXTRIN GLUCANOTRANSFERASE | Authors: | Ishii, N, Haga, K, Yamane, K, Harata, K. | Deposit date: | 1999-11-14 | Release date: | 2000-04-07 | Last modified: | 2021-11-03 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Crystal structure of alkalophilic asparagine 233-replaced cyclodextrin glucanotransferase complexed with an inhibitor, acarbose, at 2.0 A resolution. J.Biochem.(Tokyo), 127, 2000
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1V3M
| Crystal structure of F283Y mutant cyclodextrin glycosyltransferase complexed with a pseudo-tetraose derived from acarbose | Descriptor: | 4,6-dideoxy-alpha-D-xylo-hexopyranose-(1-4)-beta-D-galactopyranose, 6-AMINO-4-HYDROXYMETHYL-CYCLOHEX-4-ENE-1,2,3-TRIOL, CALCIUM ION, ... | Authors: | Kanai, R, Haga, K, Akiba, T, Yamane, K, Harata, K. | Deposit date: | 2003-11-03 | Release date: | 2004-08-03 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Role of Phe283 in enzymatic reaction of cyclodextrin glycosyltransferase from alkalophilic Bacillus sp.1011: Substrate binding and arrangement of the catalytic site PROTEIN SCI., 13, 2004
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1V3K
| Crystal structure of F283Y mutant cyclodextrin glycosyltransferase | Descriptor: | CALCIUM ION, Cyclomaltodextrin glucanotransferase | Authors: | Kanai, R, Haga, K, Akiba, T, Yamane, K, Harata, K. | Deposit date: | 2003-11-03 | Release date: | 2004-08-03 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Role of Phe283 in enzymatic reaction of cyclodextrin glycosyltransferase from alkalophilic Bacillus sp.1011: substrate binding and arrangement of the catalytic site PROTEIN SCI., 13, 2004
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1V3J
| Crystal structure of F283L mutant cyclodextrin glycosyltransferase | Descriptor: | CALCIUM ION, Cyclomaltodextrin glucanotransferase | Authors: | Kanai, R, Haga, K, Akiba, T, Yamane, K, Harata, K. | Deposit date: | 2003-11-03 | Release date: | 2004-08-03 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Role of Phe283 in enzymatic reaction of cyclodextrin glycosyltransferase from alkalophilic Bacillus sp.1011: Substrate binding and arrangement of the catalytic site PROTEIN SCI., 13, 2004
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1V3L
| Crystal structure of F283L mutant cyclodextrin glycosyltransferase complexed with a pseudo-tetraose derived from acarbose | Descriptor: | 4,6-dideoxy-alpha-D-xylo-hexopyranose-(1-4)-alpha-D-glucopyranose, 4,6-dideoxy-alpha-D-xylo-hexopyranose-(1-4)-beta-D-galactopyranose, 6-AMINO-4-HYDROXYMETHYL-CYCLOHEX-4-ENE-1,2,3-TRIOL, ... | Authors: | Kanai, R, Haga, K, Akiba, T, Yamane, K, Harata, K. | Deposit date: | 2003-11-03 | Release date: | 2004-08-03 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Role of Phe283 in enzymatic reaction of cyclodextrin glycosyltransferase from alkalophilic Bacillus sp.1011: Substrate binding and arrangement of the catalytic site PROTEIN SCI., 13, 2004
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1GD9
| CRYSTALL STRUCTURE OF PYROCOCCUS PROTEIN-A1 | Descriptor: | ASPARTATE AMINOTRANSFERASE, PYRIDOXAL-5'-PHOSPHATE | Authors: | Ura, H, Harata, K, Matsui, I, Kuramitsu, S. | Deposit date: | 2000-09-22 | Release date: | 2001-09-22 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Temperature dependence of the enzyme-substrate recognition mechanism. J.Biochem., 129, 2001
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