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2DBX
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BU of 2dbx by Molmil
Crystal Structure of Gamma-glutamyltranspeptidase from Escherichia coli Complexed with L-Glutamate
Descriptor: CALCIUM ION, GLUTAMIC ACID, GLYCEROL, ...
Authors:Okada, T, Wada, K, Fukuyama, K.
Deposit date:2005-12-16
Release date:2006-04-18
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structures of gamma-glutamyltranspeptidase from Escherichia coli, a key enzyme in glutathione metabolism, and its reaction intermediate.
Proc.Natl.Acad.Sci.Usa, 103, 2006
2DBU
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BU of 2dbu by Molmil
Crystal Structure of Gamma-glutamyltranspeptidase from Escherichia coli
Descriptor: Gamma-glutamyltranspeptidase
Authors:Okada, T, Wada, K, Fukuyama, K.
Deposit date:2005-12-16
Release date:2006-04-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structures of gamma-glutamyltranspeptidase from Escherichia coli, a key enzyme in glutathione metabolism, and its reaction intermediate.
Proc.Natl.Acad.Sci.Usa, 103, 2006
2DG5
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BU of 2dg5 by Molmil
Crystal Structure of Gamma-glutamyl transpeptidase from Escherichia coli in complex with hydrolyzed Glutathione
Descriptor: CALCIUM ION, GLUTAMIC ACID, GLYCEROL, ...
Authors:Okada, T, Wada, K, Fukuyama, K.
Deposit date:2006-03-08
Release date:2006-04-18
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structures of gamma-glutamyltranspeptidase from Escherichia coli, a key enzyme in glutathione metabolism, and its reaction intermediate.
Proc.Natl.Acad.Sci.Usa, 103, 2006
2E0N
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BU of 2e0n by Molmil
Crystal structure of CbiL in complex with S-adenosylhomocysteine, a methyltransferase involved in anaerobic vitamin B12 biosynthesis
Descriptor: Precorrin-2 C20-methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Wada, K, Fukuyama, K.
Deposit date:2006-10-10
Release date:2007-01-16
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of CbiL, a methyltransferase involved in anaerobic vitamin B biosynthesis, and CbiL in complex with S-adenosylhomocysteine--implications for the reaction mechanism.
Febs J., 274, 2007
2E0K
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BU of 2e0k by Molmil
Crystal structure of CbiL, a methyltransferase involved in anaerobic vitamin B12 biosynthesis
Descriptor: Precorrin-2 C20-methyltransferase
Authors:Wada, K, Fukuyama, K.
Deposit date:2006-10-10
Release date:2007-01-16
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structures of CbiL, a methyltransferase involved in anaerobic vitamin B biosynthesis, and CbiL in complex with S-adenosylhomocysteine--implications for the reaction mechanism.
Febs J., 274, 2007
1UBB
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BU of 1ubb by Molmil
Crystal structure of rat HO-1 in complex with ferrous heme
Descriptor: Heme oxygenase 1, PROTOPORPHYRIN IX CONTAINING FE
Authors:Sugishima, M, Sakamoto, H, Higashimoto, Y, Noguchi, M, Fukuyama, K.
Deposit date:2003-04-03
Release date:2003-09-02
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structures of Ferrous and CO-, CN(-)-, and NO-Bound Forms of Rat Heme Oxygenase-1 (HO-1) in Complex with Heme: Structural Implications for Discrimination between CO and O(2) in HO-1.
Biochemistry, 42, 2003
1ULX
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BU of 1ulx by Molmil
Partially photolyzed structure of CO-bound heme-heme oxygenase complex
Descriptor: CARBON MONOXIDE, Heme oxygenase 1, PROTOPORPHYRIN IX CONTAINING FE
Authors:Sugishima, M, Sakamoto, H, Noguchi, M, Fukuyama, K.
Deposit date:2003-09-16
Release date:2004-08-31
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:CO-trapping site in heme oxygenase revealed by photolysis of its co-bound heme complex: mechanism of escaping from product inhibition
J.Mol.Biol., 341, 2004
1VGI
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BU of 1vgi by Molmil
Crystal structure of xenon bound rat heme-heme oxygenase-1 complex
Descriptor: FORMIC ACID, Heme oxygenase 1, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Sugishima, M, Sakamoto, H, Noguchi, M, Fukuyama, K.
Deposit date:2004-04-26
Release date:2004-08-31
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:CO-trapping site in heme oxygenase revealed by photolysis of its co-bound heme complex: mechanism of escaping from product inhibition
J.Mol.Biol., 341, 2004
2E7E
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BU of 2e7e by Molmil
Bent-binding of cyanide to the heme iron in rat heme oxygenase-1
Descriptor: CYANIDE ION, Heme oxygenase 1, PROTOPORPHYRIN IX CONTAINING FE
Authors:Sugishima, M, Fukuyama, K.
Deposit date:2007-01-09
Release date:2007-06-19
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Alternative cyanide-binding modes to the haem iron in haem oxygenase
Acta Crystallogr.,Sect.F, 63, 2007
1I7H
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BU of 1i7h by Molmil
CRYSTAL STURCUTURE OF FDX
Descriptor: FE2/S2 (INORGANIC) CLUSTER, FERREDOXIN
Authors:Kakuta, Y, Horio, T, Takahashi, Y, Fukuyama, K.
Deposit date:2001-03-09
Release date:2002-03-09
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of Escherichia coli Fdx, an adrenodoxin-type ferredoxin involved in the assembly of iron-sulfur clusters.
Biochemistry, 40, 2001
1J2C
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BU of 1j2c by Molmil
Crystal structure of rat heme oxygenase-1 in complex with biliverdin IXalpha-iron cluster
Descriptor: BILIVERDINE IX ALPHA, FE (III) ION, Heme Oxygenase-1
Authors:Sugishima, M, Sakamoto, H, Noguchi, M, Fukuyama, K.
Deposit date:2002-12-29
Release date:2003-09-02
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal Structure of Rat Heme Oxygenase-1 in Complex with Biliverdin-Iron Chelate: CONFORMATIONAL CHANGE OF THE DISTAL HELIX DURING THE HEME CLEAVAGE REACTION.
J.Biol.Chem., 278, 2003
1IVJ
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BU of 1ivj by Molmil
Crystal Structure of Rat Hemeoxygenase-1 in Complex with Heme and Azide.
Descriptor: AZIDE ION, Hemeoxygenase-1, PROTOPORPHYRIN IX CONTAINING FE
Authors:Sugishima, M, Sakamoto, H, Omata, Y, Hayashi, S, Noguchi, M, Fukuyama, K.
Deposit date:2002-03-18
Release date:2002-12-11
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structure of Rat Heme Oxygenase-1 in Complex with Heme Bound to Azide. IMPLICATION FOR REGIOSPECIFIC HYDROXYLATION OF HEME AT THE alpha -MESO CARBON
J.Biol.Chem., 277, 2002
1UJ8
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BU of 1uj8 by Molmil
Structures of ORF3 in Two Crystal Forms, a Member of Isc Machinery of E. coli Involved in the Assembly of Iron-Sulfur Clusters
Descriptor: Hypothetical protein yfhJ
Authors:Shimomura, Y, Takahashi, Y, Fukuyama, K.
Deposit date:2003-07-29
Release date:2005-02-15
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal structure of Escherichia coli YfhJ protein, a member of the ISC machinery involved in assembly of iron-sulfur clusters.
Proteins, 60, 2005
1WOV
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BU of 1wov by Molmil
Crystal structure of heme oxygenase-2 from Synechocystis sp. PCC 6803 in complex with heme
Descriptor: Heme oxygenase 2, PROTOPORPHYRIN IX CONTAINING FE
Authors:Sugishima, M, Hagiwara, Y, Zhang, X, Yoshida, T, Migita, C.T, Fukuyama, K.
Deposit date:2004-08-26
Release date:2005-03-22
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal structure of dimeric heme oxygenase-2 from Synechocystis sp. PCC 6803 in complex with heme.
Biochemistry, 44, 2005
1WOW
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BU of 1wow by Molmil
Crystal structure of heme oxygenase-2 from Synechocystis sp. PCC 6803 complexed with heme in ferrous form
Descriptor: Heme oxygenase 2, PROTOPORPHYRIN IX CONTAINING FE
Authors:Sugishima, M, Hagiwara, Y, Zhang, X, Yoshida, T, Migita, C.T, Fukuyama, K.
Deposit date:2004-08-26
Release date:2005-03-22
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of dimeric heme oxygenase-2 from Synechocystis sp. PCC 6803 in complex with heme.
Biochemistry, 44, 2005
1WE1
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BU of 1we1 by Molmil
Crystal structure of heme oxygenase-1 from cyanobacterium Synechocystis sp. PCC6803 in complex with heme
Descriptor: CHLORIDE ION, Heme oxygenase 1, ISOPROPYL ALCOHOL, ...
Authors:Sugishima, M, Migita, C.T, Zhang, X, Yoshida, T, Fukuyama, K.
Deposit date:2004-05-21
Release date:2004-12-21
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of heme oxygenase-1 from cyanobacterium Synechocystis sp. PCC 6803 in complex with heme
Eur.J.Biochem., 271, 2004
1WOX
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BU of 1wox by Molmil
Crystal structure of heme oxygenase-2 from Synechocystis sp. PCC 6803 in complex with heme and NO
Descriptor: Heme oxygenase 2, NITRIC OXIDE, PROTOPORPHYRIN IX CONTAINING FE
Authors:Sugishima, M, Hagiwara, Y, Zhang, X, Yoshida, T, Migita, C.T, Fukuyama, K.
Deposit date:2004-08-26
Release date:2005-03-22
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of dimeric heme oxygenase-2 from Synechocystis sp. PCC 6803 in complex with heme.
Biochemistry, 44, 2005
2D1E
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BU of 2d1e by Molmil
Crystal structure of PcyA-biliverdin complex
Descriptor: BILIVERDINE IX ALPHA, Phycocyanobilin:ferredoxin oxidoreductase, SODIUM ION
Authors:Hagiwara, Y, Sugishima, M, Takahashi, Y, Fukuyama, K.
Deposit date:2005-08-17
Release date:2006-01-24
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.51 Å)
Cite:Crystal structure of phycocyanobilin:ferredoxin oxidoreductase in complex with biliverdin IXalpha, a key enzyme in the biosynthesis of phycocyanobilin
Proc.Natl.Acad.Sci.Usa, 103, 2006
2DKE
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BU of 2dke by Molmil
Crystal structure of substrate-free form of PcyA
Descriptor: CHLORIDE ION, Phycocyanobilin:ferredoxin oxidoreductase
Authors:Hagiwara, Y, Sugishima, M, Takahashi, Y, Fukuyama, K.
Deposit date:2006-04-10
Release date:2006-07-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Induced-fitting and electrostatic potential change of PcyA upon substrate binding demonstrated by the crystal structure of the substrate-free form
Febs Lett., 580, 2006
2DY5
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BU of 2dy5 by Molmil
Crystal structure of rat heme oxygenase-1 in complex with heme and 2-[2-(4-chlorophenyl)ethyl]-2-[(1H-imidazol-1-yl)methyl]-1,3-dioxolane
Descriptor: 1-({2-[2-(4-CHLOROPHENYL)ETHYL]-1,3-DIOXOLAN-2-YL}METHYL)-1H-IMIDAZOLE, CHLORIDE ION, Heme oxygenase 1, ...
Authors:Sugishima, M, Takahashi, H, Fukuyama, K.
Deposit date:2006-09-06
Release date:2007-05-22
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:X-ray crystallographic and biochemical characterization of the inhibitory action of an imidazole-dioxolane compound on heme oxygenase
Biochemistry, 46, 2007
4MEC
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BU of 4mec by Molmil
Crystal structure of RAT Heme oxygenase-1 in complex with ZN(II)-Protoporphyrin IX
Descriptor: Heme oxygenase 1, PROTOPORPHYRIN IX CONTAINING ZN
Authors:Sugishima, M.
Deposit date:2013-08-26
Release date:2014-08-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Distal regulation of heme binding of heme oxygenase-1 mediated by conformational fluctuations
Biochemistry, 54, 2015
1FXI
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BU of 1fxi by Molmil
STRUCTURE OF THE [2FE-2S] FERREDOXIN I FROM THE BLUE-GREEN ALGA APHANOTHECE SACRUM AT 2.2 ANGSTROMS RESOLUTION
Descriptor: FE2/S2 (INORGANIC) CLUSTER, FERREDOXIN I
Authors:Tsukihara, T.
Deposit date:1990-08-28
Release date:1991-10-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of the [2Fe-2S] ferredoxin I from the blue-green alga Aphanothece sacrum at 2.2 A resolution.
J.Mol.Biol., 216, 1990
5B3V
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BU of 5b3v by Molmil
Crystal structure of biliverdin reductase in complex with biliverdin and NADP+ from Synechocystis sp. PCC 6803
Descriptor: BILIVERDINE IX ALPHA, Biliverdin reductase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Takao, H, Wada, K.
Deposit date:2016-03-13
Release date:2017-02-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.594 Å)
Cite:A substrate-bound structure of cyanobacterial biliverdin reductase identifies stacked substrates as critical for activity
Nat Commun, 8, 2017
5B3T
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BU of 5b3t by Molmil
Crystal structure of apo-form biliverdin reductase from Synechocystis sp. PCC 6803
Descriptor: Biliverdin reductase, PHOSPHATE ION
Authors:Takao, H, Wada, K.
Deposit date:2016-03-12
Release date:2017-02-15
Last modified:2021-08-11
Method:X-RAY DIFFRACTION (2.099 Å)
Cite:A substrate-bound structure of cyanobacterial biliverdin reductase identifies stacked substrates as critical for activity
Nat Commun, 8, 2017
5B3U
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BU of 5b3u by Molmil
Crystal structure of biliverdin reductase in complex with NADP+ from Synechocystis sp. PCC 6803
Descriptor: Biliverdin reductase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, PHOSPHATE ION
Authors:Takao, H, Wada, K.
Deposit date:2016-03-13
Release date:2017-02-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.698 Å)
Cite:A substrate-bound structure of cyanobacterial biliverdin reductase identifies stacked substrates as critical for activity
Nat Commun, 8, 2017

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