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1LVJ
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BU of 1lvj by Molmil
STRUCTURE OF TAR RNA COMPLEXED WITH A TAT-TAR INTERACTION NANOMOLAR INHIBITOR THAT WAS IDENTIFIED BY COMPUTATIONAL SCREENING
分子名称: 1-[10-(3-DIMETHYLAMINO-PROPYL)-10H-PHENOTHIAZIN-2-YL]-ETHANONE, HIV-1 Trans Activating Region RNA
著者Du, Z, Lind, K.E, James, T.L.
登録日2002-05-28
公開日2002-12-11
最終更新日2022-02-23
実験手法SOLUTION NMR
主引用文献Structure of TAR RNA complexed with a Tat-TAR interaction nanomolar inhibitor that was identified by computational screening
CHEM.BIOL., 9, 2002
2AXY
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BU of 2axy by Molmil
Crystal Structure of KH1 domain of human Poly(C)-binding protein-2 with C-rich strand of human telomeric DNA
分子名称: C-rich strand of human telomeric dna, Poly(rC)-binding protein 2
著者Du, Z, Lee, J.K, Tjhen, R.J, Li, S, Stroud, R.M, James, T.L.
登録日2005-09-06
公開日2005-09-27
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal Structure of the First KH Domain of Human Poly(C)-binding Protein-2 in Complex with a C-rich Strand of Human Telomeric DNA at 1.7 A
J.Biol.Chem., 280, 2005
1R7Z
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BU of 1r7z by Molmil
NMR STRUCTURE OF THE R(GGAGGACAUUCCUCACGGGUGACCGUGGUCCUCC), DOMAIN IV STEM-LOOP B OF ENTEROVIRAL IRES WITH AUUCCU BULGE
分子名称: 34-MER
著者Du, Z, Ulyanov, N.B, Yu, J, James, T.L.
登録日2003-10-22
公開日2004-05-25
最終更新日2022-03-02
実験手法SOLUTION NMR
主引用文献NMR Structures of Loop B RNAs from the Stem-Loop IV Domain of the Enterovirus Internal Ribosome Entry Site: A Single C to U Substitution Drastically Changes the Shape and Flexibility of RNA(,).
Biochemistry, 43, 2004
1R7W
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BU of 1r7w by Molmil
NMR STRUCTURE OF THE R(GGAGGACAUCCCUCACGGGUGACCGUGGUCCUCC), DOMAIN IV STEM-LOOP B OF ENTEROVIRAL IRES WITH AUCCCU BULGE
分子名称: 34-MER
著者Du, Z, Ulyanov, N.B, Yu, J, James, T.L.
登録日2003-10-22
公開日2004-05-25
最終更新日2022-03-02
実験手法SOLUTION NMR
主引用文献NMR Structures of Loop B RNAs from the Stem-Loop IV Domain of the Enterovirus Internal Ribosome Entry Site: A Single C to U Substitution Drastically Changes the Shape and Flexibility of RNA(,).
Biochemistry, 43, 2004
1ROQ
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BU of 1roq by Molmil
Extending the Family of UNCG-like Tetraloop Motifs: NMR Structure of a CACG Tetraloop from Coxsackievirus B3
分子名称: 5'-R(*GP*GP*UP*AP*UP*CP*AP*CP*GP*GP*UP*AP*CP*C)-3'
著者Du, Z, Yu, J, Andino, R, James, T.L.
登録日2003-12-02
公開日2004-05-18
最終更新日2022-03-02
実験手法SOLUTION NMR
主引用文献Extending the Family of UNCG-like Tetraloop Motifs: NMR Structure of a CACG Tetraloop from Coxsackievirus B3
Biochemistry, 42, 2003
1TXS
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BU of 1txs by Molmil
STEM-LOOP D OF THE CLOVERLEAF DOMAIN OF ENTEROVIRAL 5'UTR RNA
分子名称: Enteroviral 5'-UTR
著者Du, Z, Yu, J, Ulyanov, N.B, Andino, R, James, T.L.
登録日2004-07-06
公開日2004-10-05
最終更新日2022-03-02
実験手法SOLUTION NMR
主引用文献Solution Structure of a Consensus Stem-Loop D RNA Domain that Plays Important Roles in Regulating Translation and Replication in Enteroviruses and Rhinoviruses
Biochemistry, 43, 2004
2JZX
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BU of 2jzx by Molmil
PCBP2 KH1-KH2 domains
分子名称: Poly(rC)-binding protein 2
著者Du, Z, Fenn, S, Tjhen, R, James, T.
登録日2008-01-21
公開日2008-08-12
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Structure of the first and second KH domains of human poly-C binding protein-2 reveals insights into its regulatory mechanisms
To be Published
2L8L
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BU of 2l8l by Molmil
Structure of an engineered splicing intein mutant based on Mycobacterium tuberculosis RecA
分子名称: Endonuclease PI-MtuI
著者Du, Z, Wang, C.
登録日2011-01-19
公開日2012-01-04
最終更新日2021-10-06
実験手法SOLUTION NMR
主引用文献pK(a) coupling at the intein active site: implications for the coordination mechanism of protein splicing with a conserved aspartate.
J.Am.Chem.Soc., 133, 2011
8GS8
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BU of 8gs8 by Molmil
cryo-EM structure of the human respiratory complex II
分子名称: (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE, FE2/S2 (INORGANIC) CLUSTER, FE3-S4 CLUSTER, ...
著者Du, Z, Zhou, X, Lai, Y, Xu, J, Zhang, Y, Zhou, S, Liu, F, Gao, Y, Gong, H, Rao, Z.
登録日2022-09-05
公開日2023-05-10
実験手法ELECTRON MICROSCOPY (2.86 Å)
主引用文献Structure of the human respiratory complex II.
Proc.Natl.Acad.Sci.USA, 120, 2023
8IKA
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BU of 8ika by Molmil
Cryo-EM structure of the encapsulin shell from Mycobacterium tuberculosis
分子名称: Type 1 encapsulin shell protein
著者Du, Z, Lai, Y, Gao, Y, Rao, Z, Gong, H.
登録日2023-02-28
公開日2023-03-15
実験手法ELECTRON MICROSCOPY (2.75 Å)
主引用文献Structure of mycobacterium tuberculosis encapsulin
To Be Published
3C4B
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BU of 3c4b by Molmil
Structure of RNaseIIIb and dsRNA binding domains of mouse Dicer
分子名称: Endoribonuclease Dicer
著者Lee, J.K, Du, Z, Tjhen, R.J, Stroud, R.M, James, T.L.
登録日2008-01-29
公開日2008-02-19
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.68 Å)
主引用文献Structural and biochemical insights into the dicing mechanism of mouse Dicer: A conserved lysine is critical for dsRNA cleavage.
Proc.Natl.Acad.Sci.Usa, 105, 2008
3C4T
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BU of 3c4t by Molmil
Structure of RNaseIIIb and dsRNA binding domains of mouse Dicer
分子名称: CADMIUM ION, Endoribonuclease Dicer
著者Lee, J.K, Du, Z, Tjhen, R.J, Stroud, R.M, James, T.L.
登録日2008-01-30
公開日2008-02-19
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structural and biochemical insights into the dicing mechanism of mouse Dicer: A conserved lysine is critical for dsRNA cleavage.
Proc.Natl.Acad.Sci.Usa, 105, 2008
2PY9
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BU of 2py9 by Molmil
Protein-RNA Interaction involving KH1 domain from Human Poly(C)-Binding Protein-2
分子名称: 12-mer C-rich strand of human telomeric RNA, Poly(rC)-binding protein 2
著者James, T.L, Du, Z, Lee, J.K.
登録日2007-05-15
公開日2007-06-12
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.56 Å)
主引用文献X-ray crystallographic and NMR studies of protein-protein and protein-nucleic acid interactions involving the KH domains from human poly(C)-binding protein-2.
Rna, 13, 2007
4L9H
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BU of 4l9h by Molmil
Crystal structure of the FP domain of human F-box protein Fbxo7(SeMet)
分子名称: F-box only protein 7
著者Du, Z, Huang, X, Shang, J, Yang, Y, Wang, G.
登録日2013-06-18
公開日2014-01-15
最終更新日2014-10-08
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure of the FP domain of Fbxo7 reveals a novel mode of protein-protein interaction.
Acta Crystallogr.,Sect.D, 70, 2014
4L9C
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BU of 4l9c by Molmil
Crystal structure of the FP domain of human F-box protein Fbxo7 (native)
分子名称: F-box only protein 7, GLYCEROL
著者Du, Z, Huang, X, Shang, J, Yang, Y, Wang, G.
登録日2013-06-18
公開日2014-01-15
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structure of the FP domain of Fbxo7 reveals a novel mode of protein-protein interaction.
Acta Crystallogr.,Sect.D, 70, 2014
5J97
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BU of 5j97 by Molmil
Dimerization domain of cytoplasmic activation/proliferation-associated protein-2 (caprin-2)
分子名称: Caprin-2
著者Wu, Y, Zhu, J, Huang, X, Du, Z.
登録日2016-04-08
公開日2017-08-09
最終更新日2022-04-13
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Dimerization domain of cytoplasmic activation/proliferation-associated protein-2 (caprin-2)
To Be Published
4HNM
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BU of 4hnm by Molmil
Crystal structure of human catenin-beta-like 1 56 kDa fragment
分子名称: Beta-catenin-like protein 1
著者Du, Z, Huang, X, Wang, G, Wu, Y.
登録日2012-10-19
公開日2013-07-31
最終更新日2013-08-21
実験手法X-RAY DIFFRACTION (2.9001 Å)
主引用文献The structure of full-length human CTNNBL1 reveals a distinct member of the armadillo-repeat protein family.
Acta Crystallogr.,Sect.D, 69, 2013
4HM9
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BU of 4hm9 by Molmil
Crystal structure of full-length human catenin-beta-like 1
分子名称: Beta-catenin-like protein 1
著者Du, Z, Huang, X, Wang, G, Wu, Y.
登録日2012-10-18
公開日2013-07-31
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (3.1001 Å)
主引用文献The structure of full-length human CTNNBL1 reveals a distinct member of the armadillo-repeat protein family.
Acta Crystallogr.,Sect.D, 69, 2013
4NLH
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BU of 4nlh by Molmil
SKICH domain of human TAX1BP1
分子名称: Tax1-binding protein 1
著者Yang, Y, Wang, G, Huang, X, Zhu, J, Du, Z.
登録日2013-11-14
公開日2014-12-24
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献SKICH domain of human TAX1BP1
To be published
2TPK
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BU of 2tpk by Molmil
AN INVESTIGATION OF THE STRUCTURE OF THE PSEUDOKNOT WITHIN THE GENE 32 MESSENGER RNA OF BACTERIOPHAGE T2 USING HETERONUCLEAR NMR METHODS
分子名称: RNA (MRNA PSEUDOKNOT)
著者Holland, J.A, Hansen, M.R, Du, Z, Hoffman, D.W.
登録日1998-10-28
公開日1998-11-04
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献An examination of coaxial stacking of helical stems in a pseudoknot motif: the gene 32 messenger RNA pseudoknot of bacteriophage T2.
Rna, 5, 1999
4WBE
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BU of 4wbe by Molmil
Crystal structure of the HR-1 domain of human caprin-1 in the C121 space group
分子名称: Caprin-1
著者Wu, Y, Zhu, J, Huang, X, Du, Z.
登録日2014-09-03
公開日2015-10-21
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Crystal structure of the HR-1 domain of human caprin-1 in the C121 space group
To be published
4WBP
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BU of 4wbp by Molmil
Crystal structure of the HR-1 domain of human caprin-1 in the P3121 space group
分子名称: Caprin-1
著者Wu, Y, Zhu, J, Huang, X, Du, Z.
登録日2014-09-03
公開日2015-10-21
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure of the HR-1 domain of human caprin-1 in the P3121 space group
To be published
1GMY
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BU of 1gmy by Molmil
Cathepsin B complexed with dipeptidyl nitrile inhibitor
分子名称: 2-AMINOETHANIMIDIC ACID, 3-METHYLPHENYLALANINE, CATHEPSIN B, ...
著者Greenspan, P.D, Clark, K.L, Tommasi, R.A, Cowen, S.D, McQuire, L.W, Farley, D.L, van Duzer, J.H, Goldberg, R.L, Zhou, H, Du, Z, Fitt, J.J, Coppa, D.E, Fang, Z, Macchia, W, Zhu, L, Capparelli, M.P, Goldstein, R, Wigg, A.M, Doughty, J.R, Bohacek, R.S, Knap, A.K.
登録日2001-09-25
公開日2002-09-19
最終更新日2017-07-05
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Identification of Dipeptidyl Nitriles as Potent and Selective Inhibitors of Cathepsin B Through Structure-Based Drug Design
J.Med.Chem., 44, 2001
2GM0
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BU of 2gm0 by Molmil
Linear dimer of stemloop SL1 from HIV-1
分子名称: RNA (35-MER)
著者Ulyanov, N.B, Mujeeb, A, Du, Z, Tonelli, M, Parslow, T.G, James, T.L.
登録日2006-04-05
公開日2006-04-25
最終更新日2022-03-09
実験手法SOLUTION NMR
主引用文献NMR Structure of the Full-length Linear Dimer of Stem-Loop-1 RNA in the HIV-1 Dimer Initiation Site.
J.Biol.Chem., 281, 2006
2P2R
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BU of 2p2r by Molmil
Crystal structure of the third KH domain of human Poly(C)-Binding Protein-2 in complex with C-rich strand of human telomeric DNA
分子名称: 6-AMINOPYRIMIDIN-2(1H)-ONE, C-rich strand of human telomeric DNA, Poly(rC)-binding protein 2
著者James, T.L, Stroud, R.M, Du, Z, Fenn, S, Tjhen, R, Lee, J.K.
登録日2007-03-07
公開日2007-06-12
最終更新日2019-07-24
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal structure of the third KH domain of human poly(C)-binding protein-2 in complex with a C-rich strand of human telomeric DNA at 1.6 A resolution.
Nucleic Acids Res., 35, 2007

 

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