Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
3MH5
DownloadVisualize
BU of 3mh5 by Molmil
HtrA proteases are activated by a conserved mechanism that can be triggered by distinct molecular cues
Descriptor: DIISOPROPYL PHOSPHONATE, Protease do
Authors:Krojer, T, Sawa, J, Huber, R, Clausen, T.
Deposit date:2010-04-07
Release date:2010-06-30
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3 Å)
Cite:HtrA proteases have a conserved activation mechanism that can be triggered by distinct molecular cues
Nat.Struct.Mol.Biol., 17, 2010
3MH7
DownloadVisualize
BU of 3mh7 by Molmil
HtrA proteases are activated by a conserved mechanism that can be triggered by distinct molecular cues
Descriptor: 5-mer peptide, Protease do
Authors:Krojer, T, Sawa, J, Huber, R, Clausen, T.
Deposit date:2010-04-07
Release date:2010-06-30
Last modified:2014-03-05
Method:X-RAY DIFFRACTION (2.961 Å)
Cite:HtrA proteases have a conserved activation mechanism that can be triggered by distinct molecular cues
Nat.Struct.Mol.Biol., 17, 2010
1VCW
DownloadVisualize
BU of 1vcw by Molmil
Crystal structure of DegS after backsoaking the activating peptide
Descriptor: Protease degS
Authors:Wilken, C, Kitzing, K, Kurzbauer, R, Ehrmann, M, Clausen, T.
Deposit date:2004-03-16
Release date:2004-06-08
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:Crystal structure of the DegS stress sensor: How a PDZ domain recognizes misfolded protein and activates a protease.
Cell(Cambridge,Mass.), 117, 2004
1VET
DownloadVisualize
BU of 1vet by Molmil
Crystal Structure of p14/MP1 at 1.9 A resolution
Descriptor: Late endosomal/lysosomal Mp1 interacting protein, Mitogen-activated protein kinase kinase 1 interacting protein 1
Authors:Kurzbauer, R, Teis, D, Maurer-Stroh, S, Eisenhaber, F, Hekman, M, Bourenkov, G.P, Bartunik, H.D, Huber, L.A, Clausen, T.
Deposit date:2004-04-05
Release date:2004-08-03
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of the p14/MP1 scaffolding complex: How a twin couple attaches mitogen- activated protein kinase signaling to late endosomes
Proc.Natl.Acad.Sci.USA, 101, 2004
1VEU
DownloadVisualize
BU of 1veu by Molmil
Crystal structure of the p14/MP1 complex at 2.15 A resolution
Descriptor: Late endosomal/lysosomal Mp1 interacting protein, Mitogen-activated protein kinase kinase 1 interacting protein 1
Authors:Kurzbauer, R, Teis, D, Maurer-Stroh, S, Eisenhaber, F, Hekman, M, Bourenkov, G.P, Bartunik, H.D, Huber, L.A, Clausen, T.
Deposit date:2004-04-05
Release date:2004-08-03
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal structure of the p14/MP1 scaffolding complex: How a twin couple attaches mitogen- activated protein kinase signaling to late endosomes
Proc.Natl.Acad.Sci.USA, 101, 2004
6TAY
DownloadVisualize
BU of 6tay by Molmil
Mouse RNF213 mutant R4753K modeling the Moyamoya-disease-related Human variant R4810K
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, RNF213,E3 ubiquitin-protein ligase RNF213,E3 ubiquitin-protein ligase RNF213, ...
Authors:Ahel, J, Meinhart, A, Haselbach, D, Clausen, T.
Deposit date:2019-10-31
Release date:2020-07-01
Last modified:2021-01-13
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Moyamoya disease factor RNF213 is a giant E3 ligase with a dynein-like core and a distinct ubiquitin-transfer mechanism.
Elife, 9, 2020
6TAX
DownloadVisualize
BU of 6tax by Molmil
Mouse RNF213 wild type protein
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, RNF213,E3 ubiquitin-protein ligase RNF213,E3 ubiquitin-protein ligase RNF213, ...
Authors:Ahel, J, Meinhart, A, Haselbach, D, Clausen, T.
Deposit date:2019-10-31
Release date:2020-07-01
Last modified:2021-01-13
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Moyamoya disease factor RNF213 is a giant E3 ligase with a dynein-like core and a distinct ubiquitin-transfer mechanism.
Elife, 9, 2020
5HBN
DownloadVisualize
BU of 5hbn by Molmil
ClpC N-terminal domain with bound phospho-arginine
Descriptor: ACETATE ION, Negative regulator of genetic competence ClpC/MecB, SULFATE ION, ...
Authors:Suskiewicz, M.J, Clausen, T.
Deposit date:2016-01-01
Release date:2016-10-12
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.602 Å)
Cite:Arginine phosphorylation marks proteins for degradation by a Clp protease.
Nature, 539, 2016
7NH3
DownloadVisualize
BU of 7nh3 by Molmil
Nematocida Huwe1 in open conformation.
Descriptor: E3 ubiquitin-protein ligase HUWE1
Authors:Petrova, O, Grishkovskaya, I, Grabarczyk, D.B, Kessler, D, Haselbach, D, Clausen, T.
Deposit date:2021-02-09
Release date:2022-03-02
Last modified:2023-07-26
Method:ELECTRON MICROSCOPY (6.37 Å)
Cite:Crystal structure of HUWE1: One ring to ubiquitinate them all
To Be Published
7OIK
DownloadVisualize
BU of 7oik by Molmil
Mouse RNF213:UBE2L3 transthiolation intermediate, chemically stabilized
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, E3 ubiquitin-protein ligase RNF213, MAGNESIUM ION, ...
Authors:Grabarczyk, D, Ahel, J, Clausen, T.
Deposit date:2021-05-11
Release date:2022-06-01
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:E3 ubiquitin ligase RNF213 employs a non-canonical zinc finger active site and is allosterically regulated by ATP
To Be Published
7OIM
DownloadVisualize
BU of 7oim by Molmil
Mouse RNF213, with mixed nucleotides bound
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, E3 ubiquitin-protein ligase RNF213, ...
Authors:Grabarczyk, D, Ahel, J, Clausen, T.
Deposit date:2021-05-11
Release date:2022-06-01
Method:ELECTRON MICROSCOPY (4 Å)
Cite:E3 ubiquitin ligase RNF213 employs a non-canonical zinc finger active site and is allosterically regulated by ATP
To Be Published
1IXO
DownloadVisualize
BU of 1ixo by Molmil
Enzyme-analogue substrate complex of Pyridoxine 5'-Phosphate Synthase
Descriptor: Pyridoxine 5'-Phosphate synthase, SN-GLYCEROL-3-PHOSPHATE
Authors:Garrido-Franco, M, Laber, B, Huber, R, Clausen, T.
Deposit date:2002-06-28
Release date:2003-02-11
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Enzyme-ligand complexes of pyridoxine 5'-phosphate synthase: implications for substrate binding and catalysis
J.MOL.BIOL., 321, 2002
1IXQ
DownloadVisualize
BU of 1ixq by Molmil
Enzyme-Phosphate2 Complex of Pyridoxine 5'-Phosphate synthase
Descriptor: PHOSPHATE ION, Pyridoxine 5'-phosphate Synthase
Authors:Garrido-Franco, M, Laber, B, Huber, R, Clausen, T.
Deposit date:2002-06-28
Release date:2003-02-11
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Enzyme-ligand complexes of pyridoxine 5'-phosphate synthase: implications for substrate binding and catalysis
J.MOL.BIOL., 321, 2002
1IXP
DownloadVisualize
BU of 1ixp by Molmil
Enzyme-phosphate Complex of Pyridoxine 5'-Phosphate synthase
Descriptor: PHOSPHATE ION, Pyridoxine 5'-Phosphate synthase
Authors:Garrido-Franco, M, Laber, B, Huber, R, Clausen, T.
Deposit date:2002-06-28
Release date:2003-02-11
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Enzyme-ligand complexes of pyridoxine 5'-phosphate synthase: implications for substrate binding and catalysis
J.MOL.BIOL., 321, 2002
1IXN
DownloadVisualize
BU of 1ixn by Molmil
Enzyme-Substrate Complex of Pyridoxine 5'-Phosphate Synthase
Descriptor: 1-DEOXY-D-XYLULOSE-5-PHOSPHATE, Pyridoxine 5'-Phosphate Synthase, SN-GLYCEROL-3-PHOSPHATE
Authors:Garrido-Franco, M, Laber, B, Huber, R, Clausen, T.
Deposit date:2002-06-28
Release date:2003-02-11
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Enzyme-ligand complexes of pyridoxine 5'-phosphate synthase: implications for substrate binding and catalysis
J.MOL.BIOL., 321, 2002
6FH1
DownloadVisualize
BU of 6fh1 by Molmil
Protein arginine kinase McsB in the apo state
Descriptor: 1,2-ETHANEDIOL, FORMIC ACID, IMIDAZOLE, ...
Authors:Suskiewicz, M.J, Heuck, A, Vu, L.D, Clausen, T.
Deposit date:2018-01-12
Release date:2019-02-06
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure of McsB, a protein kinase for regulated arginine phosphorylation.
Nat.Chem.Biol., 15, 2019
6FH4
DownloadVisualize
BU of 6fh4 by Molmil
CtsR C-terminal domain with bound phospho-arginine
Descriptor: PHOSPHATE ION, Transcriptional regulator CtsR, phospho-arginine
Authors:Suskiewicz, M.J, Clausen, T.
Deposit date:2018-01-12
Release date:2019-02-27
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Structure of McsB, a protein kinase for regulated arginine phosphorylation.
Nat.Chem.Biol., 15, 2019
6FH2
DownloadVisualize
BU of 6fh2 by Molmil
Protein arginine kinase McsB in the AMP-PN-bound state
Descriptor: 1,2-ETHANEDIOL, AMP PHOSPHORAMIDATE, Protein-arginine kinase
Authors:Suskiewicz, M.J, Heuck, A, Vu, L.D, Clausen, T.
Deposit date:2018-01-12
Release date:2019-02-06
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of McsB, a protein kinase for regulated arginine phosphorylation.
Nat.Chem.Biol., 15, 2019
6FH3
DownloadVisualize
BU of 6fh3 by Molmil
Protein arginine kinase McsB in the pArg-bound state
Descriptor: 1,2-ETHANEDIOL, Protein-arginine kinase, phospho-arginine
Authors:Suskiewicz, M.J, Heuck, A, Vu, L.D, Clausen, T.
Deposit date:2018-01-12
Release date:2019-02-27
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structure of McsB, a protein kinase for regulated arginine phosphorylation.
Nat.Chem.Biol., 15, 2019
1Z41
DownloadVisualize
BU of 1z41 by Molmil
Crystal structure of oxidized YqjM from Bacillus subtilis
Descriptor: FLAVIN MONONUCLEOTIDE, Probable NADH-dependent flavin oxidoreductase yqjM, SULFATE ION
Authors:Kitzing, K, Fitzpatrick, T.B, Wilken, C, Sawa, J, Bourenkov, G.P, Macheroux, P, Clausen, T.
Deposit date:2005-03-15
Release date:2005-05-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:The 1.3 A Crystal Structure of the Flavoprotein YqjM Reveals a Novel Class of Old Yellow Enzymes
J.Biol.Chem., 280, 2005
1Z48
DownloadVisualize
BU of 1z48 by Molmil
Crystal structure of reduced YqjM from Bacillus subtilis
Descriptor: FLAVIN MONONUCLEOTIDE, Probable NADH-dependent flavin oxidoreductase yqjM
Authors:Kitzing, K, Fitzpatrick, T.B, Wilken, C, Sawa, J, Bourenkov, G.P, Macheroux, P, Clausen, T.
Deposit date:2005-03-15
Release date:2005-05-17
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The 1.3 A Crystal Structure of the Flavoprotein YqjM Reveals a Novel Class of Old Yellow Enzymes
J.Biol.Chem., 280, 2005
1Z42
DownloadVisualize
BU of 1z42 by Molmil
Crystal structure of oxidized YqjM from Bacillus subtilis complexed with p-hydroxybenzaldehyde
Descriptor: FLAVIN MONONUCLEOTIDE, P-HYDROXYBENZALDEHYDE, Probable NADH-dependent flavin oxidoreductase yqjM, ...
Authors:Kitzing, K, Fitzpatrick, T.B, Wilken, C, Sawa, J, Bourenkov, G.P, Macheroux, P, Clausen, T.
Deposit date:2005-03-15
Release date:2005-05-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:The 1.3 A Crystal Structure of the Flavoprotein YqjM Reveals a Novel Class of Old Yellow Enzymes
J.Biol.Chem., 280, 2005
1Z44
DownloadVisualize
BU of 1z44 by Molmil
Crystal structure of oxidized YqjM from Bacillus subtilis complexed with p-nitrophenol
Descriptor: FLAVIN MONONUCLEOTIDE, P-NITROPHENOL, Probable NADH-dependent flavin oxidoreductase yqjM, ...
Authors:Kitzing, K, Fitzpatrick, T.B, Wilken, C, Sawa, J, Bourenkov, G.P, Macheroux, P, Clausen, T.
Deposit date:2005-03-15
Release date:2005-05-17
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:The 1.3 A Crystal Structure of the Flavoprotein YqjM Reveals a Novel Class of Old Yellow Enzymes
J.Biol.Chem., 280, 2005
1EG5
DownloadVisualize
BU of 1eg5 by Molmil
NIFS-LIKE PROTEIN
Descriptor: AMINOTRANSFERASE, PYRIDOXAL-5'-PHOSPHATE, SULFATE ION
Authors:Kaiser, J.T, Clausen, T, Bourenkow, G.P, Bartunik, H.-D, Steinbacher, S, Huber, R.
Deposit date:2000-02-13
Release date:2000-04-02
Last modified:2018-01-31
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of a NifS-like protein from Thermotoga maritima: implications for iron sulphur cluster assembly.
J.Mol.Biol., 297, 2000
4GEQ
DownloadVisualize
BU of 4geq by Molmil
Crystal structure of the Spc24-Spc25/Cnn1 binding interface
Descriptor: GLYCEROL, Kinetochore protein SPC24, Kinetochore protein SPC25, ...
Authors:Malvezzi, F, Litos, G, Schleiffer, A, Heuck, A, Clausen, T, Westermann, S.
Deposit date:2012-08-02
Release date:2013-01-30
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:A structural basis for kinetochore recruitment of the Ndc80 complex via two distinct centromere receptors.
Embo J., 32, 2013

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon