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1IBM
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BU of 1ibm by Molmil
STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE
分子名称: 16S RIBOSOMAL RNA, 30S RIBOSOMAL PROTEIN S10, 30S RIBOSOMAL PROTEIN S11, ...
著者Ogle, J.M, Brodersen, D.E, Clemons Jr, W.M, Tarry, M.J, Carter, A.P, Ramakrishnan, V.
登録日2001-03-28
公開日2001-05-04
最終更新日2022-12-21
実験手法X-RAY DIFFRACTION (3.31 Å)
主引用文献Recognition of cognate transfer RNA by the 30S ribosomal subunit.
Science, 292, 2001
1IBL
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BU of 1ibl by Molmil
STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE AND WITH THE ANTIBIOTIC PAROMOMYCIN
分子名称: 16S RIBOSOMAL RNA, 30S RIBOSOMAL PROTEIN S10, 30S RIBOSOMAL PROTEIN S11, ...
著者Ogle, J.M, Brodersen, D.E, Clemons Jr, W.M, Tarry, M.J, Carter, A.P, Ramakrishnan, V.
登録日2001-03-28
公開日2001-05-04
最終更新日2022-12-21
実験手法X-RAY DIFFRACTION (3.11 Å)
主引用文献Recognition of cognate transfer RNA by the 30S ribosomal subunit.
Science, 292, 2001
2P51
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BU of 2p51 by Molmil
Crystal structure of the S. pombe Pop2p deadenylation subunit
分子名称: MAGNESIUM ION, SPCC18.06c protein
著者Thyssen Jonstrup, A, Andersen, K.R, Van, L.B, Brodersen, D.E.
登録日2007-03-14
公開日2007-05-15
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献The 1.4-A crystal structure of the S. pombe Pop2p deadenylase subunit unveils the configuration of an active enzyme
Nucleic Acids Res., 35, 2007
2QTX
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BU of 2qtx by Molmil
Crystal structure of an Hfq-like protein from Methanococcus jannaschii
分子名称: Uncharacterized protein MJ1435
著者Nielsen, J.S, Boggild, A, Andersen, C.B.F, Nielsen, G, Boysen, A, Brodersen, D.E, Valentin-Hansen, P.
登録日2007-08-03
公開日2007-11-06
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献An Hfq-like protein in archaea: Crystal structure and functional characterization of the Sm protein from Methanococcus jannaschii.
Rna, 13, 2007
3G10
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BU of 3g10 by Molmil
Structure of S. pombe Pop2p - Mg2+ and Mn2+ bound form
分子名称: CCR4-Not complex subunit Caf1, MAGNESIUM ION, MANGANESE (II) ION
著者Andersen, K.R, Jonstrup, A.T, Van, L.B, Brodersen, D.E.
登録日2009-01-29
公開日2009-03-31
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.597 Å)
主引用文献The activity and selectivity of fission yeast Pop2p are affected by a high affinity for Zn2+ and Mn2+ in the active site
Rna, 15, 2009
3G0Z
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BU of 3g0z by Molmil
Structure of S. pombe Pop2p - Zn2+ and Mn2+ bound form
分子名称: CCR4-Not complex subunit Caf1, MANGANESE (II) ION, ZINC ION
著者Andersen, K.R, Jonstrup, A.T, Van, L.B, Brodersen, D.E.
登録日2009-01-29
公開日2009-03-31
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.004 Å)
主引用文献The activity and selectivity of fission yeast Pop2p are affected by a high affinity for Zn2+ and Mn2+ in the active site
Rna, 15, 2009
3HFN
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BU of 3hfn by Molmil
Crystal Structure of an Hfq protein from Anabaena sp.
分子名称: Asl2047 protein
著者Boggild, A, Overgaard, M, Valentin-Hansen, P, Brodersen, D.E.
登録日2009-05-12
公開日2009-07-14
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.31 Å)
主引用文献Cyanobacteria contain a structural homologue of the Hfq protein with altered RNA-binding properties.
Febs J., 276, 2009
3HFO
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Crystal Structure of an Hfq protein from Synechocystis sp.
分子名称: Ssr3341 protein
著者Boggild, A, Overgaard, M, Valentin-Hansen, P, Brodersen, D.E.
登録日2009-05-12
公開日2009-07-14
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Cyanobacteria contain a structural homologue of the Hfq protein with altered RNA-binding properties.
Febs J., 276, 2009
2HBK
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Structure of the yeast nuclear exosome component, Rrp6p, reveals an interplay between the active site and the HRDC domain; Protein in complex with Mn
分子名称: Exosome complex exonuclease RRP6, MANGANESE (II) ION
著者Midtgaard, S.F, Assenholt, J, Jonstrup, A.T, Van, L.B, Jensen, T.H, Brodersen, D.E.
登録日2006-06-14
公開日2006-07-25
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Structure of the nuclear exosome component Rrp6p reveals an interplay between the active site and the HRDC domain.
Proc.Natl.Acad.Sci.Usa, 103, 2006
2HBL
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Structure of the yeast nuclear exosome component, Rrp6p, reveals an interplay between the active site and the HRDC domain; Protein in complex with Mn, Zn, and AMP
分子名称: ADENOSINE MONOPHOSPHATE, Exosome complex exonuclease RRP6, MANGANESE (II) ION, ...
著者Midtgaard, S.F, Assenholt, J, Jonstrup, A.T, Van, L.B, Jensen, T.H, Brodersen, D.E.
登録日2006-06-14
公開日2006-07-25
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structure of the nuclear exosome component Rrp6p reveals an interplay between the active site and the HRDC domain.
Proc.Natl.Acad.Sci.Usa, 103, 2006
2HBJ
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Structure of the yeast nuclear exosome component, Rrp6p, reveals an interplay between the active site and the HRDC domain
分子名称: Exosome complex exonuclease RRP6
著者Midtgaard, S.F, Assenholt, J, Jonstrup, A.T, Van, L.B, Jensen, T.H, Brodersen, D.E.
登録日2006-06-14
公開日2006-07-25
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structure of the nuclear exosome component Rrp6p reveals an interplay between the active site and the HRDC domain.
Proc.Natl.Acad.Sci.Usa, 103, 2006
2HBM
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BU of 2hbm by Molmil
Structure of the yeast nuclear exosome component, Rrp6p, reveals an interplay between the active site and the HRDC domain; Protein in complex with Mn, Zn, and UMP
分子名称: Exosome complex exonuclease RRP6, MANGANESE (II) ION, URIDINE-5'-MONOPHOSPHATE, ...
著者Midtgaard, S.F, Assenholt, J, Jonstrup, A.T, Van, L.B, Jensen, T.H, Brodersen, D.E.
登録日2006-06-14
公開日2006-07-25
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structure of the nuclear exosome component Rrp6p reveals an interplay between the active site and the HRDC domain.
Proc.Natl.Acad.Sci.Usa, 103, 2006
1FJG
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BU of 1fjg by Molmil
STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH THE ANTIBIOTICS STREPTOMYCIN, SPECTINOMYCIN, AND PAROMOMYCIN
分子名称: 16S RIBOSOMAL RNA, 30S RIBOSOMAL PROTEIN S10, 30S RIBOSOMAL PROTEIN S11, ...
著者Carter, A.P, Clemons Jr, W.M, Brodersen, D.E, Wimberly, B.T, Morgan-Warren, R.J, Ramakrishnan, V.
登録日2000-08-08
公開日2000-09-25
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics
Nature, 407, 2000
1J5E
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BU of 1j5e by Molmil
Structure of the Thermus thermophilus 30S Ribosomal Subunit
分子名称: 16S ribosomal RNA, 30S RIBOSOMAL PROTEIN S10, 30S RIBOSOMAL PROTEIN S11, ...
著者Wimberly, B.T, Brodersen, D.E, Clemons Jr, W.M, Morgan-Warren, R, Carter, A.P, Vonrhein, C, Hartsch, T, Ramakrishnan, V.
登録日2002-04-08
公開日2002-04-12
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (3.05 Å)
主引用文献Structure of the 30S ribosomal subunit.
Nature, 407, 2000
6TKT
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BU of 6tkt by Molmil
Structure of the bacterial toxin phenomycin
分子名称: Pre-phenomycin
著者Nielsen, J.T, Mulder, F.A.A, Toerring, T, Poulsen, T.
登録日2019-11-28
公開日2020-01-22
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Structure and Function of the Bacterial Protein Toxin Phenomycin.
Structure, 28, 2020
1N33
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BU of 1n33 by Molmil
Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer rna anticodon stem-loop mismatched at the second codon position at the a site with paromomycin
分子名称: 16S RIBOSOMAL RNA, 30S RIBOSOMAL PROTEIN S10, 30S RIBOSOMAL PROTEIN S11, ...
著者Ogle, J.M, Murphy IV, F.V, Tarry, M.J, Ramakrishnan, V.
登録日2002-10-25
公開日2002-11-29
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (3.35 Å)
主引用文献Selection of tRNA by the Ribosome Requires a Transition from an Open to a Closed Form
Cell(Cambridge,Mass.), 111, 2002
1N36
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BU of 1n36 by Molmil
Structure of the Thermus thermophilus 30S ribosomal subunit in the presence of crystallographically disordered codon and near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position
分子名称: 16S RIBOSOMAL RNA, 30S RIBOSOMAL PROTEIN S10, 30S RIBOSOMAL PROTEIN S11, ...
著者Ogle, J.M, Murphy IV, F.V, Tarry, M.J, Ramakrishnan, V.
登録日2002-10-25
公開日2002-11-29
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (3.65 Å)
主引用文献Selection of tRNA by the Ribosome Requires a Transition from an Open to a Closed Form
Cell(Cambridge,Mass.), 111, 2002
1N34
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Structure of the Thermus thermophilus 30S ribosomal subunit in the presence of codon and crystallographically disordered near-cognate transfer rna anticodon stem-loop mismatched at the first codon position
分子名称: 16S RIBOSOMAL RNA, 30S RIBOSOMAL PROTEIN S10, 30S RIBOSOMAL PROTEIN S11, ...
著者Ogle, J.M, Murphy IV, F.V, Tarry, M.J, Ramakrishnan, V.
登録日2002-10-25
公開日2002-11-29
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (3.8 Å)
主引用文献Selection of tRNA by the Ribosome Requires a Transition from an Open to a Closed Form
Cell(Cambridge,Mass.), 111, 2002
1N32
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BU of 1n32 by Molmil
Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer RNA anticodon stem-loop mismatched at the first codon position at the a site with paromomycin
分子名称: 16S RIBOSOMAL RNA, 30S RIBOSOMAL PROTEIN S10, 30S RIBOSOMAL PROTEIN S11, ...
著者Ogle, J.M, Murphy IV, F.V, Tarry, M.J, Ramakrishnan, V.
登録日2002-10-25
公開日2002-11-29
最終更新日2019-11-20
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Selection of tRNA by the Ribosome Requires a Transition from an Open to a Closed Form
Cell(Cambridge,Mass.), 111, 2002
5ECD
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BU of 5ecd by Molmil
Structure of the Shigella flexneri VapC mutant D98N crystal form 1
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, tRNA(fMet)-specific endonuclease VapC
著者Xu, K.
登録日2015-10-20
公開日2016-02-17
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Structural analysis of the active site architecture of the VapC toxin from Shigella flexneri.
Proteins, 84, 2016
1X18
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BU of 1x18 by Molmil
Contact sites of ERA GTPase on the THERMUS THERMOPHILUS 30S SUBUNIT
分子名称: 30S ribosomal protein S11, 30S ribosomal protein S18, 30S ribosomal protein S2, ...
著者Sharma, M.R, Barat, C, Agrawal, R.K.
登録日2005-04-02
公開日2005-05-17
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (13.5 Å)
主引用文献Interaction of Era with the 30S Ribosomal Subunit Implications for 30S Subunit Assembly
Mol.Cell, 18, 2005
1X1L
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Interaction of ERA,a GTPase protein, with the 3'minor domain of the 16S rRNA within the THERMUS THERMOPHILUS 30S subunit.
分子名称: GTP-binding protein era, RNA (130-MER)
著者Sharma, M.R, Barat, C, Agrawal, R.K.
登録日2005-04-06
公開日2005-05-17
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (13.5 Å)
主引用文献Interaction of Era with the 30S Ribosomal Subunit Implications for 30S Subunit Assembly
Mol.Cell, 18, 2005
2R1G
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Coordinates of the thermus thermophilus 30S components neighboring RbfA as obtained by fitting into the CRYO-EM map of A 30S-RBFA complex
分子名称: 16S RIBOSOMAL RNA HELIX 1, 16S RIBOSOMAL RNA HELIX 18, 16S RIBOSOMAL RNA HELIX 27, ...
著者Datta, P.P, Wilson, D.N, Kawazoe, M, Swami, N.K, Kaminishi, T, Sharma, M.R, Booth, T.M, Takemoto, C, Fucini, P, Yokoyama, S, Agrawal, R.K.
登録日2007-08-22
公開日2008-03-18
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (12.5 Å)
主引用文献Structural aspects of RbfA action during small ribosomal subunit assembly.
Mol.Cell, 28, 2007
1T1M
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Binding position of ribosome recycling factor (RRF) on the E. coli 70S ribosome
分子名称: 42-mer fragment of double helix from 16S rRNA, dodecamer fragment of double helix from 23S rRNA, ribosome recycling factor
著者Agrawal, R.K, Sharma, M.R, Kiel, M.C, Hirokawa, G, Booth, T.M, Spahn, C.M, Grassucci, R.A, Kaji, A, Frank, J.
登録日2004-04-16
公開日2004-06-15
最終更新日2024-02-14
実験手法ELECTRON MICROSCOPY (12 Å)
主引用文献Visualization of ribosome-recycling factor on the Escherichia coli 70S ribosome: Functional implications
Proc.Natl.Acad.Sci.USA, 101, 2004
1T1O
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Components of the control 70S ribosome to provide reference for the RRF binding site
分子名称: 19-mer fragment of the 23S rRNA, 42-mer fragment of double helix from 16S rRNA, dodecamer fragment of double helix from 23S rRNA
著者Agrawal, R.K, Sharma, M.R, Kiel, M.C, Hirokawa, G, Booth, T.M, Spahn, C.M, Grassucci, R.A, Kaji, A, Frank, J.
登録日2004-04-16
公開日2004-06-15
最終更新日2024-02-14
実験手法ELECTRON MICROSCOPY (12 Å)
主引用文献Visualization of ribosome-recycling factor on the Escherichia coli 70S ribosome: Functional implications
Proc.Natl.Acad.Sci.USA, 101, 2004
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